Wall clock time and date at job start Tue Mar 31 2020 05:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86796 * 120.00056 * 2 1 4 4 H 1.48502 * 109.46998 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47093 * 299.99862 * 3 2 1 6 6 H 1.48503 * 109.47109 * 60.00176 * 3 2 1 7 7 C 1.39936 * 119.99902 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99965 * 174.48764 * 7 2 1 9 9 C 1.41445 * 120.00048 * 354.48084 * 7 2 1 10 10 C 1.40783 * 120.17264 * 145.72452 * 9 7 2 11 11 C 1.37717 * 120.03875 * 180.02562 * 10 9 7 12 12 C 1.38369 * 120.41641 * 359.97240 * 11 10 9 13 13 C 1.39894 * 120.35354 * 0.05196 * 12 11 10 14 14 C 1.47856 * 120.02688 * 179.97438 * 13 12 11 15 15 O 1.21556 * 120.00436 * 179.97438 * 14 13 12 16 16 N 1.34780 * 119.99886 * 359.95240 * 14 13 12 17 17 C 1.39870 * 120.00013 * 185.63695 * 16 14 13 18 18 C 1.38921 * 120.47516 * 214.17459 * 17 16 14 19 19 N 1.31778 * 120.71456 * 179.70085 * 18 17 16 20 20 C 1.31873 * 121.82265 * 0.58969 * 19 18 17 21 21 C 1.38480 * 120.88565 * 359.69917 * 20 19 18 22 22 F 1.35096 * 120.41019 * 179.97438 * 21 20 19 23 23 C 1.38748 * 119.18487 * 0.02562 * 21 20 19 24 24 C 1.39049 * 119.94824 * 359.94884 * 13 12 11 25 25 H 0.97000 * 119.99749 * 0.02562 * 1 2 3 26 26 H 1.07998 * 119.98494 * 0.02562 * 10 9 7 27 27 H 1.08001 * 119.79561 * 180.02562 * 11 10 9 28 28 H 1.07995 * 119.82177 * 180.02562 * 12 11 10 29 29 H 0.97000 * 120.00001 * 5.64478 * 16 14 13 30 30 H 1.08005 * 119.64570 * 0.02562 * 18 17 16 31 31 H 1.07995 * 119.56317 * 179.72361 * 20 19 18 32 32 H 1.08000 * 120.82716 * 180.02562 * 23 21 20 33 33 H 1.07999 * 120.20120 * 180.29966 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3463 -0.0006 5 1 1.8836 2.3963 -1.2125 6 1 1.8836 2.3964 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0842 -1.2140 -0.0904 9 6 1.3057 -2.4340 0.1167 10 6 1.7662 -3.5821 -0.5555 11 6 1.0799 -4.7705 -0.4398 12 6 -0.0635 -4.8465 0.3356 13 6 -0.5365 -3.7161 1.0105 14 6 -1.7595 -3.8053 1.8366 15 8 -2.1698 -2.8229 2.4232 16 7 -2.4196 -4.9759 1.9390 17 6 -3.6386 -5.0339 2.6223 18 6 -3.9874 -6.1673 3.3461 19 7 -5.1321 -6.2248 3.9964 20 6 -5.9922 -5.2253 3.9798 21 6 -5.7192 -4.0641 3.2764 22 9 -6.6075 -3.0464 3.2655 23 6 -4.5226 -3.9593 2.5819 24 6 0.1447 -2.5086 0.9041 25 1 -0.4850 0.8401 -0.0004 26 1 2.6581 -3.5309 -1.1622 27 1 1.4370 -5.6489 -0.9568 28 1 -0.5940 -5.7835 0.4199 29 1 -2.0493 -5.7782 1.5388 30 1 -3.3108 -7.0084 3.3804 31 1 -6.9218 -5.3133 4.5224 32 1 -4.2825 -3.0657 2.0249 33 1 -0.2141 -1.6345 1.4272 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336035272.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:18 Heat of formation + Delta-G solvation = -25.419825 kcal Electronic energy + Delta-G solvation = -20939.325441 eV Core-core repulsion = 17458.115414 eV Total energy + Delta-G solvation = -3481.210027 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.086 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.00596 -40.71314 -39.09930 -37.25386 -34.95353 -33.77303 -31.90731 -30.78748 -29.65361 -29.38449 -25.48590 -24.46140 -23.63260 -22.19214 -21.09695 -19.93160 -18.43849 -17.82574 -17.09528 -17.05387 -16.16843 -15.86393 -15.70489 -15.18230 -14.84098 -14.47599 -14.10384 -13.95578 -13.48995 -13.33297 -13.19106 -12.84753 -12.66723 -12.38651 -11.82219 -11.27401 -11.22598 -10.98601 -10.78065 -10.59826 -10.28537 -9.99024 -9.82906 -9.51683 -9.37250 -9.17665 -8.39114 -7.82406 -7.58463 -6.81606 -4.55904 0.77573 1.01845 1.95122 2.67824 3.03544 3.04424 3.08547 3.08960 3.40962 3.68928 3.88054 4.00170 4.36509 4.55178 4.64901 4.79387 4.89029 5.35278 5.40393 5.40842 5.74164 5.87407 5.98385 6.06167 6.24088 6.53298 6.67374 6.78624 6.84833 7.10869 7.19593 7.41697 7.51096 7.65503 7.67527 7.84248 8.02195 8.36750 8.46789 8.67986 8.73348 10.14060 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.020983 B = 0.004142 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.119528 B = 6758.144119 C = 7918.796093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.071 3.929 3 Si 0.915 3.085 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.272 1.272 7 C -0.464 4.464 8 H 0.082 0.918 9 C 0.099 3.901 10 C -0.196 4.196 11 C -0.102 4.102 12 C -0.207 4.207 13 C -0.136 4.136 14 C 0.566 3.434 15 O -0.520 6.520 16 N -0.674 5.674 17 C 0.148 3.852 18 C 0.057 3.943 19 N -0.438 5.438 20 C 0.042 3.958 21 C 0.073 3.927 22 F -0.128 7.128 23 C -0.122 4.122 24 C -0.074 4.074 25 H 0.283 0.717 26 H 0.100 0.900 27 H 0.097 0.903 28 H 0.092 0.908 29 H 0.416 0.584 30 H 0.165 0.835 31 H 0.166 0.834 32 H 0.159 0.841 33 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.518 -8.597 3.060 11.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.147 4.147 3 Si 0.740 3.260 4 H -0.184 1.184 5 H -0.199 1.199 6 H -0.197 1.197 7 C -0.494 4.494 8 H 0.100 0.900 9 C 0.096 3.904 10 C -0.216 4.216 11 C -0.120 4.120 12 C -0.227 4.227 13 C -0.140 4.140 14 C 0.359 3.641 15 O -0.395 6.395 16 N -0.321 5.321 17 C 0.049 3.951 18 C -0.104 4.104 19 N -0.145 5.145 20 C -0.117 4.117 21 C 0.051 3.949 22 F -0.107 7.107 23 C -0.150 4.150 24 C -0.094 4.094 25 H 0.094 0.906 26 H 0.118 0.882 27 H 0.115 0.885 28 H 0.110 0.890 29 H 0.255 0.745 30 H 0.183 0.817 31 H 0.183 0.817 32 H 0.177 0.823 33 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -7.171 -8.393 3.895 11.706 hybrid contribution 0.537 1.343 -0.833 1.670 sum -6.634 -7.050 3.062 10.153 Atomic orbital electron populations 1.69729 1.07380 1.29525 1.35946 1.25922 0.94937 1.01430 0.92370 0.86140 0.80579 0.80664 0.78651 1.18431 1.19876 1.19690 1.19594 0.95125 0.89874 1.44837 0.90016 1.17629 0.91444 0.92627 0.88660 1.21290 1.02488 0.94084 1.03693 1.20481 0.95647 0.96898 0.98958 1.20389 1.00350 0.95861 1.06115 1.19330 0.95680 0.96554 1.02409 1.19130 0.83933 0.81268 0.79818 1.90746 1.67974 1.35795 1.45018 1.43678 1.19581 1.13628 1.55174 1.18662 0.86802 0.95312 0.94308 1.22683 0.95185 0.97901 0.94600 1.67644 1.02252 1.27767 1.16823 1.22740 1.00534 0.88450 1.00021 1.18638 0.88665 0.86908 1.00691 1.91525 1.66441 1.57802 1.94941 1.21732 0.91251 1.01510 1.00549 1.21691 0.95671 0.94959 0.97047 0.90580 0.88211 0.88484 0.88963 0.74508 0.81749 0.81660 0.82332 0.84762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.65 10.97 55.55 0.61 -20.04 16 2 C 0.07 1.73 5.31 -17.34 -0.09 1.64 16 3 Si 0.92 18.42 29.56 -169.99 -5.03 13.40 16 4 H -0.26 -5.13 7.11 56.52 0.40 -4.72 16 5 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 6 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 7 C -0.46 -11.74 9.04 -37.73 -0.34 -12.08 16 8 H 0.08 1.97 7.85 -52.49 -0.41 1.55 16 9 C 0.10 2.47 5.50 -106.87 -0.59 1.89 16 10 C -0.20 -4.34 9.78 -38.81 -0.38 -4.72 16 11 C -0.10 -1.98 10.01 -39.72 -0.40 -2.38 16 12 C -0.21 -3.91 9.55 -38.91 -0.37 -4.29 16 13 C -0.14 -2.95 5.87 -105.04 -0.62 -3.57 16 14 C 0.57 11.27 7.52 -12.32 -0.09 11.18 16 15 O -0.52 -11.95 14.16 5.32 0.08 -11.87 16 16 N -0.67 -10.12 5.29 -10.62 -0.06 -10.17 16 17 C 0.15 2.13 6.27 -83.58 -0.52 1.61 16 18 C 0.06 0.70 11.12 -17.32 -0.19 0.50 16 19 N -0.44 -5.58 10.35 -13.02 -0.13 -5.71 16 20 C 0.04 0.50 11.17 -17.44 -0.19 0.31 16 21 C 0.07 1.01 7.34 -39.30 -0.29 0.72 16 22 F -0.13 -1.80 17.28 2.25 0.04 -1.76 16 23 C -0.12 -1.90 8.75 -39.03 -0.34 -2.24 16 24 C -0.07 -1.84 8.16 -38.44 -0.31 -2.16 16 25 H 0.28 6.74 8.30 -40.82 -0.34 6.40 16 26 H 0.10 2.05 8.06 -52.49 -0.42 1.63 16 27 H 0.10 1.58 8.06 -52.49 -0.42 1.15 16 28 H 0.09 1.36 6.39 -52.49 -0.34 1.03 16 29 H 0.42 4.94 6.86 -40.82 -0.28 4.66 16 30 H 0.17 1.50 8.06 -52.48 -0.42 1.08 16 31 H 0.17 1.50 8.06 -52.49 -0.42 1.07 16 32 H 0.16 2.81 6.61 -52.49 -0.35 2.46 16 33 H 0.13 3.68 6.06 -52.49 -0.32 3.36 16 LS Contribution 298.62 15.07 4.50 4.50 Total: -1.00 -28.40 298.62 -7.25 -35.64 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -2.52 Total: 9.60 kcal Atomic # 6 Polarization: -8.85 SS G_CDS: -4.73 Total: -13.58 kcal Atomic # 7 Polarization: -36.34 SS G_CDS: 0.42 Total: -35.93 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: 0.08 Total: -11.87 kcal Atomic # 9 Polarization: -1.80 SS G_CDS: 0.04 Total: -1.76 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -5.03 Total: 13.40 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -28.40 -7.25 -35.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336035272.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.221 kcal (2) G-P(sol) polarization free energy of solvation -28.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds