Wall clock time and date at job start Tue Mar 31 2020 05:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86796 * 120.00056 * 2 1 4 4 H 1.48502 * 109.46998 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47093 * 299.99862 * 3 2 1 6 6 H 1.48503 * 109.47109 * 60.00176 * 3 2 1 7 7 C 1.39936 * 119.99902 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99965 * 174.48764 * 7 2 1 9 9 C 1.41445 * 120.00048 * 354.48084 * 7 2 1 10 10 C 1.40783 * 120.17264 * 145.72452 * 9 7 2 11 11 C 1.37717 * 120.03875 * 180.02562 * 10 9 7 12 12 C 1.38369 * 120.41641 * 359.97240 * 11 10 9 13 13 C 1.39894 * 120.35354 * 0.05196 * 12 11 10 14 14 C 1.47856 * 120.02688 * 179.97438 * 13 12 11 15 15 O 1.21556 * 120.00436 * 179.97438 * 14 13 12 16 16 N 1.34780 * 119.99886 * 359.95240 * 14 13 12 17 17 C 1.39870 * 120.00013 * 185.63695 * 16 14 13 18 18 C 1.38921 * 120.47516 * 214.17459 * 17 16 14 19 19 N 1.31778 * 120.71456 * 179.70085 * 18 17 16 20 20 C 1.31873 * 121.82265 * 0.58969 * 19 18 17 21 21 C 1.38480 * 120.88565 * 359.69917 * 20 19 18 22 22 F 1.35096 * 120.41019 * 179.97438 * 21 20 19 23 23 C 1.38748 * 119.18487 * 0.02562 * 21 20 19 24 24 C 1.39049 * 119.94824 * 359.94884 * 13 12 11 25 25 H 0.97000 * 119.99749 * 0.02562 * 1 2 3 26 26 H 1.07998 * 119.98494 * 0.02562 * 10 9 7 27 27 H 1.08001 * 119.79561 * 180.02562 * 11 10 9 28 28 H 1.07995 * 119.82177 * 180.02562 * 12 11 10 29 29 H 0.97000 * 120.00001 * 5.64478 * 16 14 13 30 30 H 1.08005 * 119.64570 * 0.02562 * 18 17 16 31 31 H 1.07995 * 119.56317 * 179.72361 * 20 19 18 32 32 H 1.08000 * 120.82716 * 180.02562 * 23 21 20 33 33 H 1.07999 * 120.20120 * 180.29966 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3463 -0.0006 5 1 1.8836 2.3963 -1.2125 6 1 1.8836 2.3964 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0842 -1.2140 -0.0904 9 6 1.3057 -2.4340 0.1167 10 6 1.7662 -3.5821 -0.5555 11 6 1.0799 -4.7705 -0.4398 12 6 -0.0635 -4.8465 0.3356 13 6 -0.5365 -3.7161 1.0105 14 6 -1.7595 -3.8053 1.8366 15 8 -2.1698 -2.8229 2.4232 16 7 -2.4196 -4.9759 1.9390 17 6 -3.6386 -5.0339 2.6223 18 6 -3.9874 -6.1673 3.3461 19 7 -5.1321 -6.2248 3.9964 20 6 -5.9922 -5.2253 3.9798 21 6 -5.7192 -4.0641 3.2764 22 9 -6.6075 -3.0464 3.2655 23 6 -4.5226 -3.9593 2.5819 24 6 0.1447 -2.5086 0.9041 25 1 -0.4850 0.8401 -0.0004 26 1 2.6581 -3.5309 -1.1622 27 1 1.4370 -5.6489 -0.9568 28 1 -0.5940 -5.7835 0.4199 29 1 -2.0493 -5.7782 1.5388 30 1 -3.3108 -7.0084 3.3804 31 1 -6.9218 -5.3133 4.5224 32 1 -4.2825 -3.0657 2.0249 33 1 -0.2141 -1.6345 1.4272 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336035272.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:18 Heat of formation + Delta-G solvation = -42.637280 kcal Electronic energy + Delta-G solvation = -20940.072046 eV Core-core repulsion = 17458.115414 eV Total energy + Delta-G solvation = -3481.956632 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.086 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.09991 -41.97625 -40.45759 -38.91074 -36.34251 -35.52394 -33.11325 -32.24309 -31.35844 -30.71174 -27.26287 -25.76620 -24.79462 -23.58045 -22.79847 -21.44421 -19.86048 -19.25373 -18.36356 -18.09708 -17.66965 -17.17377 -16.90420 -16.76464 -16.46391 -15.94717 -15.66826 -15.09049 -15.02526 -14.59127 -14.55736 -14.34631 -14.21267 -13.58076 -13.41996 -12.94483 -12.86398 -12.57979 -12.22422 -12.13870 -11.98850 -11.52055 -11.32562 -11.15476 -10.79953 -10.45399 -9.67527 -9.39639 -9.33706 -8.60780 -6.44651 -0.31600 -0.12538 0.33814 0.97640 1.36492 1.43126 1.51409 1.79686 1.92168 2.19822 2.52903 2.78749 2.91569 3.42482 3.54212 3.61565 3.66801 3.81854 4.00240 4.29666 4.42089 4.53375 4.72596 4.83572 4.87131 5.04964 5.07228 5.12484 5.29181 5.46972 5.55617 5.78586 5.84458 6.02105 6.22430 6.32278 6.57110 6.64946 6.88559 6.90602 7.00993 8.36506 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.020983 B = 0.004142 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.119528 B = 6758.144119 C = 7918.796093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.026 3.974 3 Si 0.984 3.016 4 H -0.251 1.251 5 H -0.267 1.267 6 H -0.273 1.273 7 C -0.502 4.502 8 H 0.082 0.918 9 C 0.065 3.935 10 C -0.198 4.198 11 C -0.101 4.101 12 C -0.179 4.179 13 C -0.145 4.145 14 C 0.566 3.434 15 O -0.562 6.562 16 N -0.649 5.649 17 C 0.128 3.872 18 C 0.081 3.919 19 N -0.443 5.443 20 C 0.062 3.938 21 C 0.061 3.939 22 F -0.134 7.134 23 C -0.141 4.141 24 C -0.112 4.112 25 H 0.283 0.717 26 H 0.111 0.889 27 H 0.145 0.855 28 H 0.147 0.853 29 H 0.434 0.566 30 H 0.204 0.796 31 H 0.200 0.800 32 H 0.127 0.873 33 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.793 -12.136 3.204 14.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.186 4.186 3 Si 0.805 3.195 4 H -0.175 1.175 5 H -0.192 1.192 6 H -0.198 1.198 7 C -0.533 4.533 8 H 0.100 0.900 9 C 0.063 3.937 10 C -0.218 4.218 11 C -0.119 4.119 12 C -0.198 4.198 13 C -0.149 4.149 14 C 0.358 3.642 15 O -0.441 6.441 16 N -0.298 5.298 17 C 0.030 3.970 18 C -0.079 4.079 19 N -0.150 5.150 20 C -0.097 4.097 21 C 0.039 3.961 22 F -0.112 7.112 23 C -0.170 4.170 24 C -0.132 4.132 25 H 0.093 0.907 26 H 0.130 0.870 27 H 0.163 0.837 28 H 0.165 0.835 29 H 0.276 0.724 30 H 0.221 0.779 31 H 0.217 0.783 32 H 0.145 0.855 33 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.455 -12.001 4.032 14.692 hybrid contribution 0.501 2.160 -0.843 2.372 sum -6.954 -9.841 3.189 12.465 Atomic orbital electron populations 1.69853 1.08942 1.30072 1.38343 1.26764 0.95556 1.04672 0.91597 0.85120 0.79520 0.76306 0.78554 1.17466 1.19182 1.19780 1.19850 0.95314 0.91044 1.47093 0.89957 1.17941 0.92133 0.93882 0.89741 1.21602 1.02912 0.94265 1.02976 1.21001 0.95056 0.97340 0.98459 1.21000 0.99464 0.96631 1.02701 1.19594 0.96067 0.96414 1.02779 1.18932 0.83725 0.82134 0.79392 1.90734 1.68896 1.37724 1.46715 1.43228 1.19359 1.12506 1.54670 1.18782 0.86302 0.96067 0.95859 1.23212 0.95095 0.97522 0.92099 1.67820 1.02513 1.27681 1.17028 1.23252 1.01237 0.86977 0.98233 1.18747 0.88222 0.87710 1.01410 1.91510 1.66444 1.58220 1.95046 1.21683 0.92868 1.01146 1.01302 1.21451 0.97436 0.95454 0.98896 0.90703 0.87044 0.83741 0.83515 0.72408 0.77918 0.78310 0.85529 0.88651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.89 10.97 21.82 0.24 -46.65 16 2 C 0.03 1.36 5.31 85.25 0.45 1.82 16 3 Si 0.98 39.64 29.56 68.60 2.03 41.67 16 4 H -0.25 -9.59 7.11 99.48 0.71 -8.89 16 5 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 6 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 7 C -0.50 -26.77 9.04 23.47 0.21 -26.56 16 8 H 0.08 4.15 7.85 -2.91 -0.02 4.13 16 9 C 0.07 3.38 5.50 -21.32 -0.12 3.27 16 10 C -0.20 -8.62 9.78 22.77 0.22 -8.39 16 11 C -0.10 -3.56 10.01 22.18 0.22 -3.34 16 12 C -0.18 -6.12 9.55 22.70 0.22 -5.90 16 13 C -0.15 -6.28 5.87 -20.14 -0.12 -6.40 16 14 C 0.57 22.71 7.52 86.79 0.65 23.36 16 15 O -0.56 -27.30 14.16 -3.89 -0.06 -27.35 16 16 N -0.65 -18.14 5.29 -305.80 -1.62 -19.76 16 17 C 0.13 3.45 6.27 38.26 0.24 3.69 16 18 C 0.08 1.67 11.12 84.86 0.94 2.61 16 19 N -0.44 -9.63 10.35 -195.12 -2.02 -11.64 16 20 C 0.06 1.31 11.17 84.74 0.95 2.25 16 21 C 0.06 1.64 7.34 22.45 0.16 1.81 16 22 F -0.13 -3.73 17.28 44.97 0.78 -2.95 16 23 C -0.14 -4.45 8.75 22.63 0.20 -4.25 16 24 C -0.11 -5.91 8.16 23.01 0.19 -5.72 16 25 H 0.28 14.56 8.30 -92.71 -0.77 13.79 16 26 H 0.11 4.48 8.06 -2.91 -0.02 4.45 16 27 H 0.14 3.81 8.06 -2.91 -0.02 3.78 16 28 H 0.15 3.40 6.39 -2.91 -0.02 3.38 16 29 H 0.43 8.43 6.86 -92.71 -0.64 7.79 16 30 H 0.20 2.54 8.06 -2.91 -0.02 2.52 16 31 H 0.20 2.81 8.06 -2.91 -0.02 2.79 16 32 H 0.13 4.82 6.61 -2.91 -0.02 4.80 16 33 H 0.10 5.73 6.06 -2.91 -0.02 5.71 16 Total: -1.00 -68.29 298.62 4.32 -63.97 By element: Atomic # 1 Polarization: 23.94 SS G_CDS: 0.54 Total: 24.49 kcal Atomic # 6 Polarization: -26.19 SS G_CDS: 4.42 Total: -21.76 kcal Atomic # 7 Polarization: -74.66 SS G_CDS: -3.40 Total: -78.06 kcal Atomic # 8 Polarization: -27.30 SS G_CDS: -0.06 Total: -27.35 kcal Atomic # 9 Polarization: -3.73 SS G_CDS: 0.78 Total: -2.95 kcal Atomic # 14 Polarization: 39.64 SS G_CDS: 2.03 Total: 41.67 kcal Total: -68.29 4.32 -63.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336035272.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.331 kcal (2) G-P(sol) polarization free energy of solvation -68.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds