Wall clock time and date at job start Tue Mar 31 2020 05:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30750 * 1 3 3 Si 1.86799 * 119.99831 * 2 1 4 4 H 1.48500 * 109.47402 * 240.00187 * 3 2 1 5 5 H 1.48502 * 109.47233 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47475 * 119.99667 * 3 2 1 7 7 C 1.40031 * 120.00097 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99859 * 170.22004 * 7 2 1 9 9 C 1.41537 * 119.99741 * 350.21756 * 7 2 1 10 10 C 1.41183 * 120.99381 * 151.69521 * 9 7 2 11 11 C 1.37586 * 119.02453 * 180.02562 * 10 9 7 12 12 N 1.32090 * 121.10650 * 359.73789 * 11 10 9 13 13 C 1.32485 * 122.22905 * 0.53392 * 12 11 10 14 14 N 1.39379 * 119.58021 * 179.74630 * 13 12 11 15 15 C 1.34776 * 120.00034 * 5.10219 * 14 13 12 16 16 O 1.21565 * 119.99978 * 354.95799 * 15 14 13 17 17 C 1.47685 * 119.99735 * 174.95976 * 15 14 13 18 18 C 1.39673 * 120.11937 * 179.97438 * 17 15 14 19 19 C 1.37833 * 119.88066 * 180.25509 * 18 17 15 20 20 C 1.38659 * 120.11749 * 359.47292 * 19 18 17 21 21 F 1.35094 * 119.87823 * 180.25458 * 20 19 18 22 22 C 1.38660 * 120.24074 * 0.50767 * 20 19 18 23 23 C 1.37833 * 120.12401 * 359.77412 * 22 20 19 24 24 C 1.38628 * 120.83425 * 359.47131 * 13 12 11 25 25 H 0.96999 * 119.99884 * 0.02562 * 1 2 3 26 26 H 1.08007 * 120.48816 * 359.97438 * 10 9 7 27 27 H 1.07998 * 119.44692 * 179.97438 * 11 10 9 28 28 H 0.97001 * 119.99979 * 185.09695 * 14 13 12 29 29 H 1.07999 * 120.05731 * 359.97438 * 18 17 15 30 30 H 1.08002 * 119.93943 * 179.72217 * 19 18 17 31 31 H 1.08005 * 119.93635 * 179.74101 * 22 20 19 32 32 H 1.07998 * 120.06354 * 179.97438 * 23 22 20 33 33 H 1.08003 * 120.59733 * 180.28273 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 3.0952 1.6965 -1.2125 5 1 1.2764 2.7465 -0.0006 6 1 3.0952 1.6966 1.2125 7 6 2.0077 -1.2127 0.0005 8 1 3.0759 -1.2195 -0.1583 9 6 1.3154 -2.4294 0.2094 10 6 1.7914 -3.6401 -0.3392 11 6 1.0861 -4.7992 -0.1111 12 7 -0.0188 -4.7945 0.6128 13 6 -0.5100 -3.6851 1.1450 14 7 -1.6833 -3.7429 1.8952 15 6 -2.2545 -4.9341 2.1621 16 8 -1.7994 -5.9497 1.6729 17 6 -3.4334 -5.0055 3.0488 18 6 -4.0277 -6.2386 3.3267 19 6 -5.1310 -6.2989 4.1507 20 6 -5.6443 -5.1397 4.7122 21 9 -6.7227 -5.2051 5.5232 22 6 -5.0579 -3.9130 4.4400 23 6 -3.9578 -3.8404 3.6128 24 6 0.1312 -2.4686 0.9699 25 1 -0.4850 0.8400 -0.0004 26 1 2.6956 -3.6561 -0.9298 27 1 1.4438 -5.7291 -0.5278 28 1 -2.0886 -2.9258 2.2254 29 1 -3.6263 -7.1425 2.8930 30 1 -5.5940 -7.2514 4.3626 31 1 -5.4643 -3.0126 4.8767 32 1 -3.5021 -2.8844 3.4012 33 1 -0.2703 -1.5674 1.4093 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336078165.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:58 Heat of formation + Delta-G solvation = -15.969948 kcal Electronic energy + Delta-G solvation = -20767.441711 eV Core-core repulsion = 17286.641461 eV Total energy + Delta-G solvation = -3480.800250 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.086 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.14954 -40.13670 -38.65882 -37.42855 -34.44335 -33.84876 -31.39109 -30.98886 -30.50329 -28.45960 -26.03815 -24.04775 -23.16833 -22.03268 -21.47308 -19.88474 -18.27981 -17.69799 -17.38603 -16.48043 -15.83476 -15.64784 -15.26805 -15.02159 -14.64083 -14.27347 -14.21447 -13.89750 -13.71684 -13.28699 -13.01014 -12.69977 -12.63090 -12.54756 -12.09026 -11.46165 -11.24550 -11.22811 -10.95436 -10.34738 -10.22010 -9.81597 -9.57598 -9.42684 -9.37607 -8.89961 -8.01368 -7.80839 -7.10397 -6.80428 -4.66979 0.58925 1.02170 2.51284 2.76985 2.98933 3.01842 3.04825 3.24109 3.47799 3.82752 3.88164 3.97041 4.48074 4.62955 4.65170 4.78810 5.02491 5.12100 5.58255 5.62076 5.70229 5.84694 5.87966 5.99766 6.15696 6.50901 6.55333 6.61609 6.74799 6.89905 7.06873 7.31243 7.39403 7.70526 7.87467 8.13588 8.35977 8.63726 8.70675 8.77511 9.60776 10.06884 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.022416 B = 0.003769 C = 0.003254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.817316 B = 7428.161716 C = 8602.390545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.076 3.924 3 Si 0.915 3.085 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.457 4.457 8 H 0.081 0.919 9 C 0.144 3.856 10 C -0.279 4.279 11 C 0.117 3.883 12 N -0.552 5.552 13 C 0.334 3.666 14 N -0.651 5.651 15 C 0.541 3.459 16 O -0.474 6.474 17 C -0.134 4.134 18 C -0.034 4.034 19 C -0.162 4.162 20 C 0.114 3.886 21 F -0.139 7.139 22 C -0.160 4.160 23 C -0.060 4.060 24 C -0.235 4.235 25 H 0.282 0.718 26 H 0.103 0.897 27 H 0.125 0.875 28 H 0.407 0.593 29 H 0.147 0.853 30 H 0.141 0.859 31 H 0.141 0.859 32 H 0.139 0.861 33 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.131 -2.797 7.830 12.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.142 4.142 3 Si 0.739 3.261 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.488 4.488 8 H 0.100 0.900 9 C 0.136 3.864 10 C -0.303 4.303 11 C -0.037 4.037 12 N -0.271 5.271 13 C 0.109 3.891 14 N -0.297 5.297 15 C 0.326 3.674 16 O -0.346 6.346 17 C -0.137 4.137 18 C -0.053 4.053 19 C -0.180 4.180 20 C 0.094 3.906 21 F -0.117 7.117 22 C -0.179 4.179 23 C -0.079 4.079 24 C -0.260 4.260 25 H 0.093 0.907 26 H 0.122 0.878 27 H 0.143 0.857 28 H 0.243 0.757 29 H 0.165 0.835 30 H 0.159 0.841 31 H 0.159 0.841 32 H 0.156 0.844 33 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -9.533 -4.208 7.676 12.942 hybrid contribution 0.312 2.136 0.116 2.162 sum -9.221 -2.072 7.792 12.249 Atomic orbital electron populations 1.69734 1.07559 1.29371 1.35640 1.25933 0.94879 1.01396 0.91958 0.86255 0.79989 0.79780 0.80057 1.18905 1.20257 1.18770 1.19540 0.95844 0.89994 1.43470 0.90039 1.17572 0.90178 0.92283 0.86406 1.21967 1.04487 0.94592 1.09258 1.21781 0.90696 0.96584 0.94624 1.67216 1.15559 1.28102 1.16199 1.18164 0.86664 0.91073 0.93199 1.43308 1.24896 1.08874 1.52662 1.18195 0.83260 0.84260 0.81653 1.90862 1.61419 1.33662 1.48613 1.20288 0.98120 0.94343 1.00979 1.21170 0.92476 0.97949 0.93681 1.21123 0.98609 0.97900 1.00398 1.17953 0.85594 0.94812 0.92207 1.91506 1.52518 1.97246 1.70433 1.21072 0.98109 0.96928 1.01743 1.21269 0.94279 0.98262 0.94080 1.21601 1.01400 0.95343 1.07652 0.90722 0.87843 0.85746 0.75666 0.83482 0.84131 0.84125 0.84363 0.85240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.22 10.83 55.55 0.60 -18.62 16 2 C 0.08 1.81 5.30 -17.34 -0.09 1.72 16 3 Si 0.91 17.63 29.57 -169.99 -5.03 12.61 16 4 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 5 H -0.28 -5.21 7.11 56.52 0.40 -4.81 16 6 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 7 C -0.46 -11.52 9.13 -37.65 -0.34 -11.87 16 8 H 0.08 1.96 7.87 -52.49 -0.41 1.55 16 9 C 0.14 3.71 5.58 -106.56 -0.59 3.12 16 10 C -0.28 -6.73 9.90 -38.70 -0.38 -7.11 16 11 C 0.12 2.77 11.15 -17.68 -0.20 2.58 16 12 N -0.55 -13.87 7.85 -12.53 -0.10 -13.97 16 13 C 0.33 7.94 7.41 -154.77 -1.15 6.79 16 14 N -0.65 -12.52 5.33 -12.40 -0.07 -12.59 16 15 C 0.54 10.14 7.73 -12.40 -0.10 10.05 16 16 O -0.47 -10.70 14.59 5.31 0.08 -10.62 16 17 C -0.13 -1.89 5.87 -104.97 -0.62 -2.50 16 18 C -0.03 -0.42 9.59 -39.19 -0.38 -0.80 16 19 C -0.16 -1.70 10.01 -39.57 -0.40 -2.09 16 20 C 0.11 1.23 7.31 -39.27 -0.29 0.94 16 21 F -0.14 -1.52 17.26 2.25 0.04 -1.48 16 22 C -0.16 -1.62 10.01 -39.57 -0.40 -2.02 16 23 C -0.06 -0.68 9.53 -39.20 -0.37 -1.06 16 24 C -0.23 -5.81 8.59 -38.47 -0.33 -6.14 16 25 H 0.28 6.17 8.29 -40.82 -0.34 5.84 16 26 H 0.10 2.28 8.06 -52.48 -0.42 1.86 16 27 H 0.13 2.55 8.06 -52.49 -0.42 2.13 16 28 H 0.41 6.34 6.74 -40.82 -0.28 6.07 16 29 H 0.15 1.82 7.65 -52.49 -0.40 1.42 16 30 H 0.14 1.15 8.06 -52.49 -0.42 0.72 16 31 H 0.14 1.10 8.06 -52.48 -0.42 0.68 16 32 H 0.14 1.31 6.41 -52.49 -0.34 0.98 16 33 H 0.13 3.16 6.27 -52.48 -0.33 2.83 16 LS Contribution 299.32 15.07 4.51 4.51 Total: -1.00 -30.43 299.32 -8.17 -38.60 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -2.58 Total: 9.95 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: -5.63 Total: -8.40 kcal Atomic # 7 Polarization: -45.61 SS G_CDS: 0.44 Total: -45.17 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.08 Total: -10.62 kcal Atomic # 9 Polarization: -1.52 SS G_CDS: 0.04 Total: -1.48 kcal Atomic # 14 Polarization: 17.63 SS G_CDS: -5.03 Total: 12.61 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.43 -8.17 -38.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336078165.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.627 kcal (2) G-P(sol) polarization free energy of solvation -30.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds