Wall clock time and date at job start Tue Mar 31 2020 05:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30750 * 1 3 3 Si 1.86799 * 119.99831 * 2 1 4 4 H 1.48500 * 109.47402 * 240.00187 * 3 2 1 5 5 H 1.48502 * 109.47233 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47475 * 119.99667 * 3 2 1 7 7 C 1.40031 * 120.00097 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99859 * 170.22004 * 7 2 1 9 9 C 1.41537 * 119.99741 * 350.21756 * 7 2 1 10 10 C 1.41183 * 120.99381 * 151.69521 * 9 7 2 11 11 C 1.37586 * 119.02453 * 180.02562 * 10 9 7 12 12 N 1.32090 * 121.10650 * 359.73789 * 11 10 9 13 13 C 1.32485 * 122.22905 * 0.53392 * 12 11 10 14 14 N 1.39379 * 119.58021 * 179.74630 * 13 12 11 15 15 C 1.34776 * 120.00034 * 5.10219 * 14 13 12 16 16 O 1.21565 * 119.99978 * 354.95799 * 15 14 13 17 17 C 1.47685 * 119.99735 * 174.95976 * 15 14 13 18 18 C 1.39673 * 120.11937 * 179.97438 * 17 15 14 19 19 C 1.37833 * 119.88066 * 180.25509 * 18 17 15 20 20 C 1.38659 * 120.11749 * 359.47292 * 19 18 17 21 21 F 1.35094 * 119.87823 * 180.25458 * 20 19 18 22 22 C 1.38660 * 120.24074 * 0.50767 * 20 19 18 23 23 C 1.37833 * 120.12401 * 359.77412 * 22 20 19 24 24 C 1.38628 * 120.83425 * 359.47131 * 13 12 11 25 25 H 0.96999 * 119.99884 * 0.02562 * 1 2 3 26 26 H 1.08007 * 120.48816 * 359.97438 * 10 9 7 27 27 H 1.07998 * 119.44692 * 179.97438 * 11 10 9 28 28 H 0.97001 * 119.99979 * 185.09695 * 14 13 12 29 29 H 1.07999 * 120.05731 * 359.97438 * 18 17 15 30 30 H 1.08002 * 119.93943 * 179.72217 * 19 18 17 31 31 H 1.08005 * 119.93635 * 179.74101 * 22 20 19 32 32 H 1.07998 * 120.06354 * 179.97438 * 23 22 20 33 33 H 1.08003 * 120.59733 * 180.28273 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 3.0952 1.6965 -1.2125 5 1 1.2764 2.7465 -0.0006 6 1 3.0952 1.6966 1.2125 7 6 2.0077 -1.2127 0.0005 8 1 3.0759 -1.2195 -0.1583 9 6 1.3154 -2.4294 0.2094 10 6 1.7914 -3.6401 -0.3392 11 6 1.0861 -4.7992 -0.1111 12 7 -0.0188 -4.7945 0.6128 13 6 -0.5100 -3.6851 1.1450 14 7 -1.6833 -3.7429 1.8952 15 6 -2.2545 -4.9341 2.1621 16 8 -1.7994 -5.9497 1.6729 17 6 -3.4334 -5.0055 3.0488 18 6 -4.0277 -6.2386 3.3267 19 6 -5.1310 -6.2989 4.1507 20 6 -5.6443 -5.1397 4.7122 21 9 -6.7227 -5.2051 5.5232 22 6 -5.0579 -3.9130 4.4400 23 6 -3.9578 -3.8404 3.6128 24 6 0.1312 -2.4686 0.9699 25 1 -0.4850 0.8400 -0.0004 26 1 2.6956 -3.6561 -0.9298 27 1 1.4438 -5.7291 -0.5278 28 1 -2.0886 -2.9258 2.2254 29 1 -3.6263 -7.1425 2.8930 30 1 -5.5940 -7.2514 4.3626 31 1 -5.4643 -3.0126 4.8767 32 1 -3.5021 -2.8844 3.4012 33 1 -0.2703 -1.5674 1.4093 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336078165.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:58 Heat of formation + Delta-G solvation = -32.665552 kcal Electronic energy + Delta-G solvation = -20768.165687 eV Core-core repulsion = 17286.641461 eV Total energy + Delta-G solvation = -3481.524226 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.086 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.01439 -41.55548 -40.10042 -38.86694 -36.16783 -35.58110 -32.56822 -32.27749 -31.95945 -30.10922 -27.91033 -25.29536 -24.09493 -23.84546 -22.95823 -21.41386 -19.59445 -19.29025 -18.49019 -17.75592 -17.16581 -16.82721 -16.70759 -16.27351 -16.14825 -16.04873 -15.70937 -15.21812 -14.74804 -14.54718 -14.36699 -14.27338 -14.21415 -13.74129 -13.30292 -13.13603 -12.86897 -12.68041 -12.12528 -12.08688 -11.91720 -11.52329 -11.17920 -11.17111 -10.23729 -9.92757 -9.86747 -9.64908 -8.89537 -8.59448 -6.57685 -0.43066 0.16016 0.78319 1.00281 1.42918 1.53629 1.57033 1.84113 2.02522 2.21809 2.65656 2.85872 3.08678 3.51381 3.63256 3.72909 3.82982 4.11048 4.15516 4.27801 4.67739 4.73832 4.82014 4.85887 4.91224 4.98560 5.05656 5.07646 5.21581 5.24580 5.46058 5.60226 5.71512 5.91681 6.12446 6.44448 6.54995 6.78317 6.84101 7.19825 7.79161 8.30545 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.022416 B = 0.003769 C = 0.003254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.817316 B = 7428.161716 C = 8602.390545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.039 3.961 3 Si 0.989 3.011 4 H -0.262 1.262 5 H -0.266 1.266 6 H -0.259 1.259 7 C -0.487 4.487 8 H 0.084 0.916 9 C 0.115 3.885 10 C -0.293 4.293 11 C 0.112 3.888 12 N -0.577 5.577 13 C 0.330 3.670 14 N -0.645 5.645 15 C 0.541 3.459 16 O -0.520 6.520 17 C -0.154 4.154 18 C -0.039 4.039 19 C -0.154 4.154 20 C 0.117 3.883 21 F -0.136 7.136 22 C -0.152 4.152 23 C -0.054 4.054 24 C -0.250 4.250 25 H 0.292 0.708 26 H 0.117 0.883 27 H 0.151 0.849 28 H 0.422 0.578 29 H 0.141 0.859 30 H 0.166 0.834 31 H 0.170 0.830 32 H 0.155 0.845 33 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.282 -1.518 8.934 13.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.177 4.177 3 Si 0.809 3.191 4 H -0.187 1.187 5 H -0.190 1.190 6 H -0.184 1.184 7 C -0.518 4.518 8 H 0.102 0.898 9 C 0.107 3.893 10 C -0.317 4.317 11 C -0.042 4.042 12 N -0.297 5.297 13 C 0.104 3.896 14 N -0.293 5.293 15 C 0.329 3.671 16 O -0.395 6.395 17 C -0.158 4.158 18 C -0.058 4.058 19 C -0.173 4.173 20 C 0.098 3.902 21 F -0.114 7.114 22 C -0.170 4.170 23 C -0.073 4.073 24 C -0.276 4.276 25 H 0.103 0.897 26 H 0.135 0.865 27 H 0.169 0.831 28 H 0.261 0.739 29 H 0.159 0.841 30 H 0.183 0.817 31 H 0.187 0.813 32 H 0.172 0.828 33 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -10.719 -2.923 8.799 14.173 hybrid contribution 0.560 1.698 -0.183 1.797 sum -10.158 -1.225 8.617 13.377 Atomic orbital electron populations 1.69773 1.08852 1.30913 1.34943 1.26779 0.95686 1.04403 0.90869 0.85144 0.78660 0.75257 0.80017 1.18659 1.19017 1.18364 1.19837 0.96218 0.90916 1.44793 0.89832 1.18005 0.91018 0.93292 0.87008 1.22156 1.05261 0.94463 1.09828 1.22237 0.90278 0.97591 0.94070 1.67346 1.16378 1.28763 1.17177 1.18416 0.87683 0.90551 0.92910 1.43305 1.23749 1.10198 1.52023 1.18890 0.83822 0.83165 0.81231 1.90824 1.63128 1.34939 1.50587 1.19968 0.97430 0.96253 1.02115 1.21180 0.93146 0.97236 0.94233 1.21291 0.97578 0.99173 0.99227 1.18107 0.85331 0.95130 0.91656 1.91522 1.52382 1.97253 1.70285 1.21334 0.97105 0.97880 1.00702 1.21405 0.94408 0.97887 0.93555 1.21587 1.01884 0.95605 1.08516 0.89730 0.86459 0.83136 0.73871 0.84084 0.81659 0.81263 0.82757 0.85455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -39.34 10.83 21.84 0.24 -39.11 16 2 C 0.04 1.82 5.30 85.29 0.45 2.28 16 3 Si 0.99 35.33 29.57 68.60 2.03 37.36 16 4 H -0.26 -9.23 7.11 99.48 0.71 -8.52 16 5 H -0.27 -8.92 7.11 99.48 0.71 -8.22 16 6 H -0.26 -9.06 7.11 99.48 0.71 -8.35 16 7 C -0.49 -24.85 9.13 23.52 0.21 -24.64 16 8 H 0.08 4.07 7.87 -2.91 -0.02 4.05 16 9 C 0.12 6.07 5.58 -21.12 -0.12 5.96 16 10 C -0.29 -14.44 9.90 22.84 0.23 -14.21 16 11 C 0.11 5.38 11.15 84.50 0.94 6.32 16 12 N -0.58 -29.70 7.85 -193.57 -1.52 -31.21 16 13 C 0.33 16.10 7.41 132.79 0.98 17.08 16 14 N -0.65 -25.15 5.33 -311.41 -1.66 -26.81 16 15 C 0.54 20.59 7.73 86.74 0.67 21.26 16 16 O -0.52 -24.21 14.59 -3.92 -0.06 -24.27 16 17 C -0.15 -4.25 5.87 -20.09 -0.12 -4.37 16 18 C -0.04 -0.94 9.59 22.52 0.22 -0.73 16 19 C -0.15 -2.89 10.01 22.27 0.22 -2.66 16 20 C 0.12 2.18 7.31 22.47 0.16 2.34 16 21 F -0.14 -2.54 17.26 44.97 0.78 -1.76 16 22 C -0.15 -2.59 10.01 22.27 0.22 -2.37 16 23 C -0.05 -1.12 9.53 22.52 0.21 -0.90 16 24 C -0.25 -12.71 8.59 22.99 0.20 -12.52 16 25 H 0.29 12.54 8.29 -92.71 -0.77 11.77 16 26 H 0.12 5.25 8.06 -2.91 -0.02 5.23 16 27 H 0.15 6.19 8.06 -2.91 -0.02 6.17 16 28 H 0.42 13.12 6.74 -92.71 -0.62 12.50 16 29 H 0.14 3.53 7.65 -2.91 -0.02 3.51 16 30 H 0.17 2.22 8.06 -2.91 -0.02 2.20 16 31 H 0.17 1.94 8.06 -2.91 -0.02 1.91 16 32 H 0.15 2.60 6.41 -2.91 -0.02 2.58 16 33 H 0.13 6.36 6.27 -2.91 -0.02 6.35 16 Total: -1.00 -66.62 299.32 4.85 -61.77 By element: Atomic # 1 Polarization: 30.63 SS G_CDS: 0.55 Total: 31.18 kcal Atomic # 6 Polarization: -11.64 SS G_CDS: 4.49 Total: -7.15 kcal Atomic # 7 Polarization: -94.19 SS G_CDS: -2.94 Total: -97.13 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: -0.06 Total: -24.27 kcal Atomic # 9 Polarization: -2.54 SS G_CDS: 0.78 Total: -1.76 kcal Atomic # 14 Polarization: 35.33 SS G_CDS: 2.03 Total: 37.36 kcal Total: -66.62 4.85 -61.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336078165.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.109 kcal (2) G-P(sol) polarization free energy of solvation -66.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds