Wall clock time and date at job start Tue Mar 31 2020 05:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86797 * 120.00271 * 2 1 4 4 H 1.48500 * 109.47367 * 239.99915 * 3 2 1 5 5 H 1.48495 * 109.47166 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47088 * 120.00069 * 3 2 1 7 7 C 1.40037 * 119.99943 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00341 * 170.16671 * 7 2 1 9 9 C 1.41543 * 119.99924 * 350.16517 * 7 2 1 10 10 C 1.41174 * 120.99661 * 153.72507 * 9 7 2 11 11 C 1.37589 * 119.02057 * 180.02562 * 10 9 7 12 12 N 1.32074 * 121.11180 * 0.02562 * 11 10 9 13 13 C 1.32482 * 122.22959 * 359.68227 * 12 11 10 14 14 N 1.39379 * 119.58413 * 180.31809 * 13 12 11 15 15 C 1.34783 * 120.00165 * 5.62171 * 14 13 12 16 16 O 1.21555 * 119.99738 * 5.11950 * 15 14 13 17 17 C 1.47808 * 120.00035 * 185.11441 * 15 14 13 18 18 C 1.39611 * 120.13733 * 359.72960 * 17 15 14 19 19 C 1.37945 * 119.90518 * 179.69548 * 18 17 15 20 20 C 1.38348 * 120.17193 * 0.58195 * 19 18 17 21 21 C 1.38552 * 120.27221 * 359.71251 * 20 19 18 22 22 F 1.35099 * 119.95352 * 180.02562 * 21 20 19 23 23 C 1.38212 * 120.09481 * 359.97438 * 21 20 19 24 24 C 1.38625 * 120.83607 * 0.58359 * 13 12 11 25 25 H 0.97002 * 119.99835 * 359.97438 * 1 2 3 26 26 H 1.08007 * 120.48905 * 0.04809 * 10 9 7 27 27 H 1.08008 * 119.44399 * 180.02562 * 11 10 9 28 28 H 0.97005 * 120.00547 * 185.62351 * 14 13 12 29 29 H 1.08000 * 120.04552 * 359.97438 * 18 17 15 30 30 H 1.07995 * 119.91324 * 180.29434 * 19 18 17 31 31 H 1.07997 * 119.86443 * 179.74652 * 20 19 18 32 32 H 1.07995 * 120.08662 * 180.02562 * 23 21 20 33 33 H 1.07993 * 120.60460 * 179.73283 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.0953 1.6963 -1.2125 5 1 1.2766 2.7464 0.0006 6 1 3.0953 1.6963 1.2125 7 6 2.0076 -1.2128 -0.0005 8 1 3.0757 -1.2196 -0.1603 9 6 1.3154 -2.4296 0.2083 10 6 1.8135 -3.6467 -0.3052 11 6 1.1074 -4.8056 -0.0784 12 7 -0.0213 -4.7939 0.6073 13 6 -0.5281 -3.6800 1.1149 14 7 -1.7201 -3.7323 1.8355 15 6 -2.2903 -4.9224 2.1095 16 8 -1.7195 -5.9531 1.8103 17 6 -3.6097 -4.9743 2.7737 18 6 -4.2652 -3.7923 3.1237 19 6 -5.4993 -3.8462 3.7379 20 6 -6.0835 -5.0685 4.0186 21 6 -5.4366 -6.2460 3.6800 22 9 -6.0132 -7.4360 3.9567 23 6 -4.2028 -6.2050 3.0585 24 6 0.1092 -2.4624 0.9338 25 1 -0.4850 0.8401 0.0004 26 1 2.7354 -3.6679 -0.8675 27 1 1.4824 -5.7406 -0.4678 28 1 -2.1393 -2.9122 2.1398 29 1 -3.8088 -2.8372 2.9099 30 1 -6.0086 -2.9319 4.0043 31 1 -7.0479 -5.1049 4.5032 32 1 -3.6989 -7.1229 2.7943 33 1 -0.3095 -1.5561 1.3456 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336213064.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:57 Heat of formation + Delta-G solvation = -32.741488 kcal Electronic energy + Delta-G solvation = -20819.863543 eV Core-core repulsion = 17338.336024 eV Total energy + Delta-G solvation = -3481.527519 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.086 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.97826 -41.58078 -40.10121 -38.90703 -36.19618 -35.60602 -32.65433 -32.31441 -31.71861 -30.16506 -27.92762 -25.63578 -23.88785 -23.70534 -23.05275 -21.46322 -19.64117 -19.45359 -17.86731 -17.47586 -17.26240 -16.92749 -16.80071 -16.73373 -16.17834 -16.06202 -15.74445 -15.38044 -14.84694 -14.61615 -14.38102 -14.27276 -14.21577 -13.29985 -13.14752 -12.98643 -12.85773 -12.68372 -12.41707 -12.10702 -11.91466 -11.56193 -11.20773 -11.16994 -10.21053 -9.95168 -9.86918 -9.66727 -8.91413 -8.58861 -6.58403 -0.39535 0.09121 0.78287 0.99971 1.43289 1.54031 1.57654 1.84905 1.96083 2.21812 2.64623 2.85060 3.14035 3.45688 3.71907 3.72956 3.96785 4.00638 4.14949 4.24851 4.60729 4.72639 4.80685 4.89362 4.95250 5.01348 5.06988 5.15071 5.21516 5.24259 5.45513 5.58753 5.74929 5.91263 6.11414 6.42648 6.53837 6.77677 6.83384 7.16130 7.78486 8.29417 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.025093 B = 0.003760 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.596088 B = 7445.970104 C = 8502.191270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.039 3.961 3 Si 0.990 3.010 4 H -0.262 1.262 5 H -0.264 1.264 6 H -0.260 1.260 7 C -0.484 4.484 8 H 0.084 0.916 9 C 0.113 3.887 10 C -0.294 4.294 11 C 0.112 3.888 12 N -0.581 5.581 13 C 0.329 3.671 14 N -0.642 5.642 15 C 0.539 3.461 16 O -0.523 6.523 17 C -0.116 4.116 18 C -0.093 4.093 19 C -0.081 4.081 20 C -0.116 4.116 21 C 0.079 3.921 22 F -0.143 7.143 23 C -0.114 4.114 24 C -0.251 4.251 25 H 0.293 0.707 26 H 0.117 0.883 27 H 0.150 0.850 28 H 0.424 0.576 29 H 0.153 0.847 30 H 0.184 0.816 31 H 0.174 0.826 32 H 0.128 0.872 33 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.270 1.036 8.090 14.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.178 4.178 3 Si 0.810 3.190 4 H -0.187 1.187 5 H -0.188 1.188 6 H -0.184 1.184 7 C -0.514 4.514 8 H 0.102 0.898 9 C 0.105 3.895 10 C -0.318 4.318 11 C -0.042 4.042 12 N -0.301 5.301 13 C 0.103 3.897 14 N -0.289 5.289 15 C 0.327 3.673 16 O -0.398 6.398 17 C -0.119 4.119 18 C -0.111 4.111 19 C -0.099 4.099 20 C -0.134 4.134 21 C 0.060 3.940 22 F -0.121 7.121 23 C -0.134 4.134 24 C -0.277 4.277 25 H 0.104 0.896 26 H 0.135 0.865 27 H 0.167 0.833 28 H 0.263 0.737 29 H 0.171 0.829 30 H 0.201 0.799 31 H 0.191 0.809 32 H 0.146 0.854 33 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -12.620 -0.422 8.033 14.965 hybrid contribution 0.869 1.128 -0.341 1.464 sum -11.750 0.706 7.692 14.062 Atomic orbital electron populations 1.69755 1.08831 1.30967 1.34546 1.26796 0.95727 1.04436 0.90851 0.85128 0.78672 0.75201 0.79980 1.18687 1.18844 1.18443 1.19864 0.96249 0.90911 1.44404 0.89834 1.18014 0.91170 0.93300 0.87045 1.22132 1.04895 0.94249 1.10525 1.22201 0.90148 0.97631 0.94217 1.67288 1.15933 1.28823 1.18078 1.18415 0.87501 0.90582 0.93175 1.43253 1.22248 1.09914 1.53525 1.18910 0.85916 0.83391 0.79054 1.90820 1.63999 1.34004 1.50928 1.19621 0.94064 0.95112 1.03125 1.21753 0.95862 0.97102 0.96414 1.21443 0.93642 0.98965 0.95833 1.21773 1.01861 0.90250 0.99536 1.17665 0.92583 0.81952 1.01773 1.91501 1.83949 1.44834 1.91861 1.21158 0.94836 0.98647 0.98775 1.21663 1.01339 0.95659 1.09026 0.89610 0.86462 0.83297 0.73667 0.82918 0.79869 0.80868 0.85409 0.84912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -38.57 10.70 21.84 0.23 -38.34 16 2 C 0.04 1.79 5.31 85.29 0.45 2.24 16 3 Si 0.99 34.96 29.57 68.60 2.03 36.99 16 4 H -0.26 -9.15 7.11 99.48 0.71 -8.45 16 5 H -0.26 -8.71 7.11 99.48 0.71 -8.00 16 6 H -0.26 -9.02 7.11 99.48 0.71 -8.31 16 7 C -0.48 -24.63 9.14 23.52 0.21 -24.41 16 8 H 0.08 4.06 7.87 -2.91 -0.02 4.04 16 9 C 0.11 5.98 5.60 -21.12 -0.12 5.86 16 10 C -0.29 -14.59 9.90 22.84 0.23 -14.37 16 11 C 0.11 5.45 11.15 84.50 0.94 6.39 16 12 N -0.58 -30.44 7.89 -193.57 -1.53 -31.97 16 13 C 0.33 16.20 7.40 132.79 0.98 17.18 16 14 N -0.64 -25.33 5.33 -311.30 -1.66 -26.99 16 15 C 0.54 21.29 7.72 86.77 0.67 21.96 16 16 O -0.52 -25.43 14.64 -3.89 -0.06 -25.49 16 17 C -0.12 -3.35 5.87 -20.10 -0.12 -3.47 16 18 C -0.09 -1.83 9.54 22.53 0.21 -1.62 16 19 C -0.08 -1.08 10.03 22.23 0.22 -0.86 16 20 C -0.12 -1.73 10.02 22.37 0.22 -1.51 16 21 C 0.08 1.78 7.29 22.34 0.16 1.94 16 22 F -0.14 -3.37 17.26 44.97 0.78 -2.60 16 23 C -0.11 -3.22 9.57 22.58 0.22 -3.01 16 24 C -0.25 -12.79 8.61 22.99 0.20 -12.59 16 25 H 0.29 12.32 8.29 -92.71 -0.77 11.55 16 26 H 0.12 5.29 8.06 -2.91 -0.02 5.26 16 27 H 0.15 6.27 8.06 -2.91 -0.02 6.24 16 28 H 0.42 13.15 6.74 -92.70 -0.63 12.53 16 29 H 0.15 2.43 6.41 -2.91 -0.02 2.41 16 30 H 0.18 0.94 8.06 -2.91 -0.02 0.92 16 31 H 0.17 1.43 8.06 -2.91 -0.02 1.40 16 32 H 0.13 4.02 7.65 -2.91 -0.02 4.00 16 33 H 0.13 6.61 6.11 -2.91 -0.02 6.59 16 Total: -1.00 -69.29 299.17 4.84 -64.46 By element: Atomic # 1 Polarization: 29.63 SS G_CDS: 0.55 Total: 30.18 kcal Atomic # 6 Polarization: -10.74 SS G_CDS: 4.49 Total: -6.25 kcal Atomic # 7 Polarization: -94.34 SS G_CDS: -2.95 Total: -97.29 kcal Atomic # 8 Polarization: -25.43 SS G_CDS: -0.06 Total: -25.49 kcal Atomic # 9 Polarization: -3.37 SS G_CDS: 0.78 Total: -2.60 kcal Atomic # 14 Polarization: 34.96 SS G_CDS: 2.03 Total: 36.99 kcal Total: -69.29 4.84 -64.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336213064.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.715 kcal (2) G-P(sol) polarization free energy of solvation -69.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds