Wall clock time and date at job start Tue Mar 31 2020 05:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30843 * 1 3 3 Si 1.86803 * 119.99967 * 2 1 4 4 H 1.48500 * 109.46778 * 269.99815 * 3 2 1 5 5 H 1.48498 * 109.47122 * 30.00347 * 3 2 1 6 6 H 1.48498 * 109.46941 * 150.00198 * 3 2 1 7 7 C 1.39975 * 119.99964 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99891 * 175.64494 * 7 2 1 9 9 C 1.41045 * 119.99995 * 355.64237 * 7 2 1 10 10 C 1.40739 * 120.30583 * 34.97241 * 9 7 2 11 11 C 1.36449 * 119.94768 * 180.31981 * 10 9 7 12 12 C 1.38885 * 120.58510 * 359.69649 * 11 10 9 13 13 C 1.38200 * 120.61885 * 359.97438 * 12 11 10 14 14 C 1.38690 * 120.03338 * 0.04815 * 13 12 11 15 15 N 1.38989 * 120.28923 * 179.97438 * 14 13 12 16 16 C 1.34771 * 120.00259 * 34.56828 * 15 14 13 17 17 O 1.21544 * 120.00174 * 355.80418 * 16 15 14 18 18 C 1.47988 * 120.00112 * 175.79994 * 16 15 14 19 19 C 1.39422 * 119.69457 * 179.97438 * 18 16 15 20 20 C 1.38455 * 119.08861 * 180.02562 * 19 18 16 21 21 C 1.38910 * 118.47320 * 0.27704 * 20 19 18 22 22 F 1.35098 * 120.34366 * 179.69891 * 21 20 19 23 23 C 1.38878 * 119.30089 * 359.45667 * 21 20 19 24 24 N 1.31456 * 120.86202 * 0.55566 * 23 21 20 25 25 H 0.97000 * 119.99978 * 359.97438 * 1 2 3 26 26 H 1.08005 * 120.02870 * 359.97438 * 10 9 7 27 27 H 1.08001 * 119.71312 * 179.71980 * 11 10 9 28 28 H 1.08001 * 119.69195 * 180.02562 * 12 11 10 29 29 H 1.08007 * 119.98354 * 180.02562 * 13 12 11 30 30 H 0.96999 * 119.99470 * 214.57447 * 15 14 13 31 31 H 1.07994 * 120.45352 * 0.04906 * 19 18 16 32 32 H 1.08002 * 120.76130 * 180.02562 * 20 19 18 33 33 H 1.08000 * 119.56818 * 180.25203 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6178 0.0000 4 1 2.4899 2.0464 -1.4001 5 1 1.4399 2.6527 0.7001 6 1 3.5400 1.4402 0.7000 7 6 2.0083 -1.2122 -0.0005 8 1 3.0860 -1.2135 -0.0716 9 6 1.3061 -2.4320 0.0917 10 6 0.0457 -2.5738 -0.5182 11 6 -0.6301 -3.7550 -0.4188 12 6 -0.0828 -4.8260 0.2755 13 6 1.1561 -4.7152 0.8778 14 6 1.8652 -3.5262 0.7933 15 7 3.1114 -3.4088 1.3974 16 6 3.9396 -4.4708 1.4459 17 8 3.5681 -5.5508 1.0300 18 6 5.3016 -4.3221 2.0053 19 6 6.1530 -5.4252 2.0527 20 6 7.4244 -5.2720 2.5791 21 6 7.8010 -4.0195 3.0470 22 9 9.0304 -3.8290 3.5737 23 6 6.9022 -2.9641 2.9629 24 7 5.7013 -3.1397 2.4578 25 1 -0.4850 0.8400 0.0004 26 1 -0.3888 -1.7465 -1.0598 27 1 -1.5991 -3.8581 -0.8845 28 1 -0.6301 -5.7545 0.3448 29 1 1.5723 -5.5548 1.4149 30 1 3.3849 -2.5623 1.7843 31 1 5.8254 -6.3858 1.6836 32 1 8.1062 -6.1082 2.6287 33 1 7.1920 -1.9875 3.3216 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336372367.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:55 Heat of formation + Delta-G solvation = -20.360745 kcal Electronic energy + Delta-G solvation = -21142.759112 eV Core-core repulsion = 17661.768462 eV Total energy + Delta-G solvation = -3480.990649 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.086 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.26405 -40.57396 -39.02934 -37.12029 -33.96413 -33.63009 -32.66270 -31.27123 -29.60646 -28.38751 -25.39824 -24.51866 -23.96753 -21.75879 -20.90167 -19.70984 -18.13358 -17.65793 -17.47115 -17.16854 -16.08825 -16.01311 -15.30942 -15.07065 -14.70663 -14.32863 -14.12326 -13.98585 -13.46752 -13.38089 -12.89936 -12.77930 -12.57292 -12.26391 -11.75279 -11.25463 -11.19382 -10.96022 -10.46945 -10.26120 -10.21920 -9.95607 -9.79461 -9.39658 -9.22437 -9.16183 -8.93244 -7.32657 -6.98062 -6.63818 -4.44996 0.37248 0.86914 2.53480 2.84352 3.05989 3.08480 3.12408 3.20729 3.56540 3.74883 3.89498 3.92340 4.14593 4.45693 4.56695 4.65774 4.86520 5.23223 5.46853 5.58833 5.61713 5.72430 6.29085 6.32671 6.49307 6.55283 6.92791 7.04801 7.18143 7.25536 7.46841 7.64226 7.69795 7.96243 8.07057 8.12206 8.38789 8.55403 8.77381 8.83972 8.97909 10.21527 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.015346 B = 0.005261 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.168883 B = 5321.342615 C = 7048.117664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.074 3.926 3 Si 0.913 3.087 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.466 4.466 8 H 0.076 0.924 9 C 0.100 3.900 10 C -0.140 4.140 11 C -0.117 4.117 12 C -0.218 4.218 13 C -0.090 4.090 14 C 0.014 3.986 15 N -0.608 5.608 16 C 0.549 3.451 17 O -0.533 6.533 18 C 0.083 3.917 19 C -0.087 4.087 20 C -0.116 4.116 21 C 0.059 3.941 22 F -0.128 7.128 23 C 0.077 3.923 24 N -0.428 5.428 25 H 0.279 0.721 26 H 0.132 0.868 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.110 0.890 30 H 0.414 0.586 31 H 0.159 0.841 32 H 0.153 0.847 33 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.637 -3.828 5.213 13.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.142 4.142 3 Si 0.738 3.262 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.497 4.497 8 H 0.094 0.906 9 C 0.096 3.904 10 C -0.160 4.160 11 C -0.136 4.136 12 C -0.237 4.237 13 C -0.110 4.110 14 C -0.080 4.080 15 N -0.249 5.249 16 C 0.334 3.666 17 O -0.411 6.411 18 C -0.055 4.055 19 C -0.107 4.107 20 C -0.142 4.142 21 C 0.037 3.963 22 F -0.107 7.107 23 C -0.084 4.084 24 N -0.139 5.139 25 H 0.090 0.910 26 H 0.149 0.851 27 H 0.108 0.892 28 H 0.109 0.891 29 H 0.128 0.872 30 H 0.252 0.748 31 H 0.177 0.823 32 H 0.171 0.829 33 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 10.621 -3.692 4.881 12.258 hybrid contribution 1.370 0.584 0.392 1.540 sum 11.991 -3.108 5.273 13.463 Atomic orbital electron populations 1.69757 1.07305 1.28886 1.37300 1.25860 0.94895 1.01106 0.92343 0.86227 0.80334 0.80509 0.79176 1.19527 1.20243 1.18519 1.19344 0.94694 0.89996 1.45670 0.90566 1.17469 0.93094 0.91197 0.88596 1.21189 0.96432 0.96497 1.01854 1.20562 0.98470 0.94314 1.00222 1.20366 0.97295 0.98357 1.07723 1.20666 0.93935 0.96327 1.00115 1.17856 0.87165 0.98018 1.04959 1.42715 1.14801 1.13641 1.53718 1.17725 0.83232 0.85226 0.80453 1.90750 1.75338 1.26278 1.48770 1.21532 0.96208 0.89455 0.98324 1.22071 0.91946 1.00812 0.95917 1.21652 0.97423 0.96687 0.98482 1.19063 0.82100 0.95905 0.99253 1.91530 1.39641 1.95772 1.83764 1.22974 0.88577 0.98992 0.97890 1.67712 1.15542 1.23752 1.06895 0.90994 0.85088 0.89227 0.89059 0.87171 0.74818 0.82308 0.82940 0.80946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.19 10.62 55.55 0.59 -19.60 16 2 C 0.07 1.80 5.42 -17.32 -0.09 1.70 16 3 Si 0.91 18.29 29.56 -169.99 -5.03 13.26 16 4 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 5 H -0.28 -5.48 7.11 56.52 0.40 -5.07 16 6 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 7 C -0.47 -11.81 8.22 -37.87 -0.31 -12.13 16 8 H 0.08 1.87 7.63 -52.49 -0.40 1.47 16 9 C 0.10 2.60 5.56 -106.65 -0.59 2.00 16 10 C -0.14 -3.58 8.61 -39.28 -0.34 -3.92 16 11 C -0.12 -2.74 9.97 -39.99 -0.40 -3.14 16 12 C -0.22 -5.00 10.04 -39.36 -0.39 -5.40 16 13 C -0.09 -2.16 8.68 -39.43 -0.34 -2.50 16 14 C 0.01 0.34 6.33 -83.21 -0.53 -0.19 16 15 N -0.61 -12.98 4.94 -10.29 -0.05 -13.04 16 16 C 0.55 10.80 7.64 -12.27 -0.09 10.70 16 17 O -0.53 -11.56 13.73 5.33 0.07 -11.49 16 18 C 0.08 1.31 6.75 -83.02 -0.56 0.75 16 19 C -0.09 -1.08 9.63 -39.06 -0.38 -1.46 16 20 C -0.12 -1.16 10.15 -39.25 -0.40 -1.56 16 21 C 0.06 0.62 7.36 -39.10 -0.29 0.34 16 22 F -0.13 -1.32 17.28 2.25 0.04 -1.28 16 23 C 0.08 0.90 11.17 -17.48 -0.20 0.70 16 24 N -0.43 -6.35 9.54 -9.75 -0.09 -6.44 16 25 H 0.28 6.42 8.30 -40.82 -0.34 6.08 16 26 H 0.13 3.45 6.15 -52.48 -0.32 3.12 16 27 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 28 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 29 H 0.11 2.57 6.19 -52.48 -0.33 2.24 16 30 H 0.41 8.44 7.43 -40.82 -0.30 8.14 16 31 H 0.16 1.84 7.64 -52.49 -0.40 1.44 16 32 H 0.15 1.05 8.06 -52.49 -0.42 0.63 16 33 H 0.17 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 298.10 15.07 4.49 4.49 Total: -1.00 -28.43 298.10 -7.46 -35.89 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -2.58 Total: 12.29 kcal Atomic # 6 Polarization: -9.18 SS G_CDS: -4.91 Total: -14.09 kcal Atomic # 7 Polarization: -39.53 SS G_CDS: 0.45 Total: -39.08 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: 0.07 Total: -11.49 kcal Atomic # 9 Polarization: -1.32 SS G_CDS: 0.04 Total: -1.28 kcal Atomic # 14 Polarization: 18.29 SS G_CDS: -5.03 Total: 13.26 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -28.43 -7.46 -35.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336372367.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.530 kcal (2) G-P(sol) polarization free energy of solvation -28.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds