Wall clock time and date at job start Tue Mar 31 2020 05:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30843 * 1 3 3 Si 1.86803 * 119.99967 * 2 1 4 4 H 1.48500 * 109.46778 * 269.99815 * 3 2 1 5 5 H 1.48498 * 109.47122 * 30.00347 * 3 2 1 6 6 H 1.48498 * 109.46941 * 150.00198 * 3 2 1 7 7 C 1.39975 * 119.99964 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99891 * 175.64494 * 7 2 1 9 9 C 1.41045 * 119.99995 * 355.64237 * 7 2 1 10 10 C 1.40739 * 120.30583 * 34.97241 * 9 7 2 11 11 C 1.36449 * 119.94768 * 180.31981 * 10 9 7 12 12 C 1.38885 * 120.58510 * 359.69649 * 11 10 9 13 13 C 1.38200 * 120.61885 * 359.97438 * 12 11 10 14 14 C 1.38690 * 120.03338 * 0.04815 * 13 12 11 15 15 N 1.38989 * 120.28923 * 179.97438 * 14 13 12 16 16 C 1.34771 * 120.00259 * 34.56828 * 15 14 13 17 17 O 1.21544 * 120.00174 * 355.80418 * 16 15 14 18 18 C 1.47988 * 120.00112 * 175.79994 * 16 15 14 19 19 C 1.39422 * 119.69457 * 179.97438 * 18 16 15 20 20 C 1.38455 * 119.08861 * 180.02562 * 19 18 16 21 21 C 1.38910 * 118.47320 * 0.27704 * 20 19 18 22 22 F 1.35098 * 120.34366 * 179.69891 * 21 20 19 23 23 C 1.38878 * 119.30089 * 359.45667 * 21 20 19 24 24 N 1.31456 * 120.86202 * 0.55566 * 23 21 20 25 25 H 0.97000 * 119.99978 * 359.97438 * 1 2 3 26 26 H 1.08005 * 120.02870 * 359.97438 * 10 9 7 27 27 H 1.08001 * 119.71312 * 179.71980 * 11 10 9 28 28 H 1.08001 * 119.69195 * 180.02562 * 12 11 10 29 29 H 1.08007 * 119.98354 * 180.02562 * 13 12 11 30 30 H 0.96999 * 119.99470 * 214.57447 * 15 14 13 31 31 H 1.07994 * 120.45352 * 0.04906 * 19 18 16 32 32 H 1.08002 * 120.76130 * 180.02562 * 20 19 18 33 33 H 1.08000 * 119.56818 * 180.25203 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6178 0.0000 4 1 2.4899 2.0464 -1.4001 5 1 1.4399 2.6527 0.7001 6 1 3.5400 1.4402 0.7000 7 6 2.0083 -1.2122 -0.0005 8 1 3.0860 -1.2135 -0.0716 9 6 1.3061 -2.4320 0.0917 10 6 0.0457 -2.5738 -0.5182 11 6 -0.6301 -3.7550 -0.4188 12 6 -0.0828 -4.8260 0.2755 13 6 1.1561 -4.7152 0.8778 14 6 1.8652 -3.5262 0.7933 15 7 3.1114 -3.4088 1.3974 16 6 3.9396 -4.4708 1.4459 17 8 3.5681 -5.5508 1.0300 18 6 5.3016 -4.3221 2.0053 19 6 6.1530 -5.4252 2.0527 20 6 7.4244 -5.2720 2.5791 21 6 7.8010 -4.0195 3.0470 22 9 9.0304 -3.8290 3.5737 23 6 6.9022 -2.9641 2.9629 24 7 5.7013 -3.1397 2.4578 25 1 -0.4850 0.8400 0.0004 26 1 -0.3888 -1.7465 -1.0598 27 1 -1.5991 -3.8581 -0.8845 28 1 -0.6301 -5.7545 0.3448 29 1 1.5723 -5.5548 1.4149 30 1 3.3849 -2.5623 1.7843 31 1 5.8254 -6.3858 1.6836 32 1 8.1062 -6.1082 2.6287 33 1 7.1920 -1.9875 3.3216 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336372367.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:55 Heat of formation + Delta-G solvation = -36.491729 kcal Electronic energy + Delta-G solvation = -21143.458604 eV Core-core repulsion = 17661.768462 eV Total energy + Delta-G solvation = -3481.690141 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.086 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.11992 -41.81810 -40.47566 -38.85749 -35.61142 -35.47818 -33.66910 -32.38191 -31.48419 -30.11616 -27.19470 -25.76249 -24.96125 -23.37845 -22.62136 -21.32654 -19.51623 -19.05695 -18.62717 -18.53930 -17.58850 -17.02182 -16.91720 -16.39071 -16.19550 -15.92651 -15.41509 -14.98601 -14.86450 -14.61861 -14.44265 -14.21492 -14.08601 -13.62623 -13.57322 -13.02145 -12.85246 -12.73662 -12.12405 -12.02684 -11.62462 -11.21636 -11.13283 -11.06078 -10.90214 -10.59230 -10.16367 -9.23870 -8.81517 -8.46081 -6.36815 -0.67598 -0.01983 0.84125 1.07357 1.41578 1.50425 1.56494 1.68508 2.19952 2.24274 2.63709 2.79109 2.81879 3.07006 3.59890 3.67310 3.69287 3.78839 4.12021 4.50038 4.60579 4.63040 4.70035 4.74358 4.82282 5.10043 5.20512 5.33360 5.40973 5.43235 5.77858 5.85462 6.09566 6.17064 6.25837 6.44605 6.65908 6.73819 6.94412 6.99584 7.26087 8.41287 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.015346 B = 0.005261 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.168883 B = 5321.342615 C = 7048.117664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.034 3.966 3 Si 0.983 3.017 4 H -0.266 1.266 5 H -0.270 1.270 6 H -0.256 1.256 7 C -0.489 4.489 8 H 0.074 0.926 9 C 0.070 3.930 10 C -0.162 4.162 11 C -0.121 4.121 12 C -0.217 4.217 13 C -0.104 4.104 14 C 0.008 3.992 15 N -0.616 5.616 16 C 0.550 3.450 17 O -0.559 6.559 18 C 0.054 3.946 19 C -0.080 4.080 20 C -0.100 4.100 21 C 0.075 3.925 22 F -0.120 7.120 23 C 0.075 3.925 24 N -0.453 5.453 25 H 0.285 0.715 26 H 0.117 0.883 27 H 0.115 0.885 28 H 0.120 0.880 29 H 0.113 0.887 30 H 0.416 0.584 31 H 0.166 0.834 32 H 0.192 0.808 33 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.881 -3.960 6.090 15.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C -0.179 4.179 3 Si 0.804 3.196 4 H -0.191 1.191 5 H -0.194 1.194 6 H -0.179 1.179 7 C -0.520 4.520 8 H 0.092 0.908 9 C 0.066 3.934 10 C -0.183 4.183 11 C -0.139 4.139 12 C -0.236 4.236 13 C -0.124 4.124 14 C -0.086 4.086 15 N -0.257 5.257 16 C 0.337 3.663 17 O -0.439 6.439 18 C -0.083 4.083 19 C -0.101 4.101 20 C -0.126 4.126 21 C 0.053 3.947 22 F -0.098 7.098 23 C -0.087 4.087 24 N -0.163 5.163 25 H 0.096 0.904 26 H 0.135 0.865 27 H 0.133 0.867 28 H 0.138 0.862 29 H 0.131 0.869 30 H 0.254 0.746 31 H 0.183 0.817 32 H 0.209 0.791 33 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 12.870 -3.846 5.762 14.616 hybrid contribution 0.792 0.532 0.187 0.972 sum 13.662 -3.314 5.949 15.265 Atomic orbital electron populations 1.69828 1.08639 1.30064 1.37669 1.26688 0.95660 1.04123 0.91426 0.85177 0.79105 0.76064 0.79267 1.19109 1.19448 1.17923 1.19484 0.94665 0.90712 1.47105 0.90793 1.17800 0.93836 0.92205 0.89546 1.21203 0.97134 0.97088 1.02840 1.20814 0.99372 0.93648 1.00094 1.20711 0.97026 0.99280 1.06595 1.20856 0.94494 0.96342 1.00728 1.18047 0.88355 0.97780 1.04447 1.42731 1.14378 1.14412 1.54187 1.18316 0.84481 0.84145 0.79320 1.90707 1.76396 1.26988 1.49778 1.21008 0.94741 0.91271 1.01304 1.22148 0.92401 0.99983 0.95572 1.21979 0.96599 0.97595 0.96392 1.19069 0.81924 0.95821 0.97904 1.91565 1.39092 1.95736 1.83436 1.23388 0.87623 1.00568 0.97090 1.67595 1.17264 1.23670 1.07818 0.90399 0.86496 0.86672 0.86200 0.86882 0.74626 0.81666 0.79083 0.78398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -42.81 10.62 21.83 0.23 -42.58 16 2 C 0.03 1.69 5.42 85.26 0.46 2.15 16 3 Si 0.98 37.63 29.56 68.60 2.03 39.65 16 4 H -0.27 -9.96 7.11 99.48 0.71 -9.25 16 5 H -0.27 -9.92 7.11 99.48 0.71 -9.21 16 6 H -0.26 -9.45 7.11 99.48 0.71 -8.75 16 7 C -0.49 -25.58 8.22 23.38 0.19 -25.39 16 8 H 0.07 3.76 7.63 -2.91 -0.02 3.74 16 9 C 0.07 3.75 5.56 -21.18 -0.12 3.63 16 10 C -0.16 -8.59 8.61 22.46 0.19 -8.40 16 11 C -0.12 -5.70 9.97 22.01 0.22 -5.48 16 12 C -0.22 -9.91 10.04 22.42 0.22 -9.69 16 13 C -0.10 -5.05 8.68 22.37 0.19 -4.86 16 14 C 0.01 0.41 6.33 38.92 0.25 0.66 16 15 N -0.62 -27.17 4.94 -304.76 -1.51 -28.67 16 16 C 0.55 22.08 7.64 86.83 0.66 22.74 16 17 O -0.56 -24.67 13.73 -3.85 -0.05 -24.72 16 18 C 0.05 1.66 6.75 41.87 0.28 1.94 16 19 C -0.08 -1.85 9.63 22.61 0.22 -1.63 16 20 C -0.10 -1.63 10.15 22.48 0.23 -1.40 16 21 C 0.07 1.33 7.36 22.58 0.17 1.49 16 22 F -0.12 -1.97 17.28 44.97 0.78 -1.20 16 23 C 0.08 1.57 11.17 84.90 0.95 2.52 16 24 N -0.45 -13.02 9.54 -184.75 -1.76 -14.79 16 25 H 0.29 13.33 8.30 -92.71 -0.77 12.56 16 26 H 0.12 6.42 6.15 -2.91 -0.02 6.40 16 27 H 0.12 4.72 8.06 -2.91 -0.02 4.69 16 28 H 0.12 4.71 8.06 -2.91 -0.02 4.69 16 29 H 0.11 5.35 6.19 -2.91 -0.02 5.33 16 30 H 0.42 17.61 7.43 -92.71 -0.69 16.92 16 31 H 0.17 3.56 7.64 -2.91 -0.02 3.54 16 32 H 0.19 1.65 8.06 -2.91 -0.02 1.63 16 33 H 0.20 2.93 8.06 -2.91 -0.02 2.91 16 Total: -1.00 -63.15 298.10 4.33 -58.82 By element: Atomic # 1 Polarization: 34.70 SS G_CDS: 0.49 Total: 35.19 kcal Atomic # 6 Polarization: -25.83 SS G_CDS: 4.12 Total: -21.71 kcal Atomic # 7 Polarization: -83.00 SS G_CDS: -3.04 Total: -86.03 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: -0.05 Total: -24.72 kcal Atomic # 9 Polarization: -1.97 SS G_CDS: 0.78 Total: -1.20 kcal Atomic # 14 Polarization: 37.63 SS G_CDS: 2.03 Total: 39.65 kcal Total: -63.15 4.33 -58.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336372367.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.329 kcal (2) G-P(sol) polarization free energy of solvation -63.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds