Wall clock time and date at job start Tue Mar 31 2020 05:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30851 * 1 3 3 Si 1.86799 * 119.99958 * 2 1 4 4 H 1.48499 * 109.47478 * 272.49842 * 3 2 1 5 5 H 1.48503 * 109.47186 * 32.50008 * 3 2 1 6 6 H 1.48502 * 109.47314 * 152.49651 * 3 2 1 7 7 C 1.39965 * 119.99998 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00188 * 347.53916 * 7 2 1 9 9 C 1.41051 * 119.99766 * 167.53645 * 7 2 1 10 10 C 1.40740 * 120.30819 * 328.80079 * 9 7 2 11 11 C 1.36448 * 119.95119 * 180.29874 * 10 9 7 12 12 C 1.38881 * 120.58142 * 359.71002 * 11 10 9 13 13 C 1.38208 * 120.62101 * 359.97438 * 12 11 10 14 14 C 1.38679 * 120.03123 * 0.02847 * 13 12 11 15 15 N 1.39003 * 120.28733 * 179.97438 * 14 13 12 16 16 C 1.34780 * 119.99899 * 34.25639 * 15 14 13 17 17 O 1.21557 * 120.00004 * 355.24868 * 16 15 14 18 18 C 1.47797 * 119.99710 * 175.52638 * 16 15 14 19 19 C 1.39581 * 120.55105 * 359.44348 * 18 16 15 20 20 N 1.31654 * 120.61852 * 179.77554 * 19 18 16 21 21 C 1.31947 * 121.90873 * 0.48457 * 20 19 18 22 22 C 1.38542 * 121.04879 * 359.78203 * 21 20 19 23 23 F 1.35095 * 120.36971 * 179.97438 * 22 21 20 24 24 C 1.38611 * 119.25587 * 359.96715 * 22 21 20 25 25 H 0.96998 * 119.99642 * 359.97438 * 1 2 3 26 26 H 1.08010 * 120.02295 * 359.97438 * 10 9 7 27 27 H 1.08003 * 119.71297 * 179.72379 * 11 10 9 28 28 H 1.08003 * 119.69078 * 180.02562 * 12 11 10 29 29 H 1.08000 * 119.98502 * 179.97438 * 13 12 11 30 30 H 0.97002 * 120.00362 * 214.24263 * 15 14 13 31 31 H 1.08002 * 119.69249 * 0.02562 * 19 18 16 32 32 H 1.07998 * 119.47402 * 179.74867 * 21 20 19 33 33 H 1.07998 * 120.86596 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 2.4372 2.0770 -1.3987 5 1 1.4674 2.6368 0.7523 6 1 3.5655 1.4256 0.6466 7 6 2.0083 -1.2121 0.0005 8 1 1.4875 -2.1363 0.2028 9 6 3.3939 -1.2266 -0.2631 10 6 3.9633 -0.2689 -1.1230 11 6 5.3036 -0.2934 -1.3777 12 6 6.1170 -1.2537 -0.7904 13 6 5.5841 -2.2014 0.0628 14 6 4.2252 -2.2002 0.3396 15 7 3.6835 -3.1512 1.1965 16 6 4.4003 -3.5982 2.2467 17 8 5.5509 -3.2355 2.3957 18 6 3.7893 -4.5342 3.2136 19 6 2.4673 -4.9537 3.0568 20 7 1.9231 -5.7908 3.9149 21 6 2.5906 -6.2574 4.9530 22 6 3.9053 -5.8858 5.1829 23 9 4.5757 -6.3715 6.2505 24 6 4.5252 -5.0103 4.3051 25 1 -0.4849 0.8401 0.0004 26 1 3.3390 0.4816 -1.5850 27 1 5.7358 0.4406 -2.0417 28 1 7.1761 -1.2595 -1.0018 29 1 6.2261 -2.9438 0.5136 30 1 2.7895 -3.4930 1.0388 31 1 1.8866 -4.5912 2.2214 32 1 2.1042 -6.9394 5.6346 33 1 5.5492 -4.7036 4.4592 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336489039.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:05 Heat of formation + Delta-G solvation = -17.628984 kcal Electronic energy + Delta-G solvation = -21263.630298 eV Core-core repulsion = 17782.758106 eV Total energy + Delta-G solvation = -3480.872191 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.086 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.19203 -40.66390 -39.27753 -37.48061 -34.21477 -33.71865 -32.69395 -31.31097 -30.54553 -28.69493 -25.51050 -24.63635 -23.77324 -22.24449 -20.97452 -19.97644 -18.31883 -17.58463 -17.50489 -17.07010 -16.78294 -16.04733 -15.92092 -15.26758 -14.79661 -14.27507 -14.06913 -13.98636 -13.69621 -13.39009 -13.35898 -13.09897 -12.63682 -12.45223 -12.17252 -11.78975 -11.22007 -10.96747 -10.59078 -10.19780 -10.12153 -10.07671 -9.92159 -9.50689 -9.47660 -9.23219 -9.01019 -7.73698 -7.26776 -7.05500 -4.60350 0.35827 0.79419 2.33026 2.57541 2.95835 3.04648 3.15824 3.26082 3.38283 3.71117 3.84510 3.89907 4.11341 4.44323 4.49971 4.58755 4.70358 4.98589 5.22875 5.38926 5.57544 5.76309 5.99498 6.05264 6.25353 6.28929 6.51376 6.61878 6.84590 7.06674 7.24052 7.36775 7.49960 7.56660 7.71794 7.83893 8.05886 8.14700 8.42473 8.58727 8.68640 9.96167 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.019642 B = 0.004912 C = 0.004197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.185124 B = 5698.599954 C = 6669.717130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.085 3.915 3 Si 0.913 3.087 4 H -0.269 1.269 5 H -0.292 1.292 6 H -0.243 1.243 7 C -0.449 4.449 8 H 0.089 0.911 9 C 0.088 3.912 10 C -0.226 4.226 11 C -0.083 4.083 12 C -0.228 4.228 13 C -0.072 4.072 14 C 0.022 3.978 15 N -0.624 5.624 16 C 0.546 3.454 17 O -0.530 6.530 18 C -0.144 4.144 19 C 0.125 3.875 20 N -0.457 5.457 21 C 0.090 3.910 22 C 0.040 3.960 23 F -0.128 7.128 24 C -0.055 4.055 25 H 0.287 0.713 26 H 0.105 0.895 27 H 0.095 0.905 28 H 0.098 0.902 29 H 0.117 0.883 30 H 0.405 0.595 31 H 0.172 0.828 32 H 0.171 0.829 33 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.369 -7.902 6.012 10.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.134 4.134 3 Si 0.740 3.260 4 H -0.196 1.196 5 H -0.220 1.220 6 H -0.166 1.166 7 C -0.478 4.478 8 H 0.107 0.893 9 C 0.084 3.916 10 C -0.245 4.245 11 C -0.102 4.102 12 C -0.248 4.248 13 C -0.092 4.092 14 C -0.072 4.072 15 N -0.265 5.265 16 C 0.332 3.668 17 O -0.408 6.408 18 C -0.149 4.149 19 C -0.033 4.033 20 N -0.164 5.164 21 C -0.068 4.068 22 C 0.018 3.982 23 F -0.107 7.107 24 C -0.082 4.082 25 H 0.097 0.903 26 H 0.122 0.878 27 H 0.113 0.887 28 H 0.116 0.884 29 H 0.135 0.865 30 H 0.242 0.758 31 H 0.188 0.812 32 H 0.188 0.812 33 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 3.020 -7.843 6.056 10.359 hybrid contribution 0.673 0.862 0.248 1.121 sum 3.693 -6.981 6.304 10.104 Atomic orbital electron populations 1.69642 1.07906 1.30422 1.35272 1.26080 0.94807 1.01614 0.90880 0.86302 0.81075 0.79597 0.79044 1.19574 1.21990 1.16604 1.19199 0.91082 0.95545 1.41978 0.89313 1.17535 0.93245 0.90014 0.90834 1.20648 0.95186 1.04061 1.04621 1.20410 0.93873 0.97468 0.98416 1.20340 0.98139 1.00543 1.05750 1.20808 0.93627 0.98475 0.96334 1.17522 0.92445 0.97190 1.00004 1.42703 1.18922 1.39874 1.25049 1.17839 0.86349 0.81587 0.80985 1.90745 1.16750 1.58383 1.74920 1.21038 0.95779 1.00529 0.97540 1.23227 0.91442 0.91527 0.97145 1.67779 1.36511 1.09652 1.02469 1.23118 0.89773 0.98278 0.95666 1.18658 0.92666 0.99282 0.87551 1.91537 1.80052 1.86242 1.52839 1.21775 1.01792 0.93095 0.91556 0.90279 0.87762 0.88657 0.88399 0.86516 0.75805 0.81151 0.81182 0.82214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.27 13.93 55.55 0.77 -19.50 16 2 C 0.09 2.10 5.47 -17.32 -0.09 2.01 16 3 Si 0.91 20.15 24.41 -169.99 -4.15 16.00 16 4 H -0.27 -5.74 6.66 56.52 0.38 -5.36 16 5 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.24 -5.61 6.69 56.52 0.38 -5.23 16 7 C -0.45 -11.02 9.13 -37.87 -0.35 -11.36 16 8 H 0.09 2.15 7.08 -52.49 -0.37 1.78 16 9 C 0.09 2.09 5.14 -106.64 -0.55 1.54 16 10 C -0.23 -5.19 6.95 -39.28 -0.27 -5.46 16 11 C -0.08 -1.75 9.97 -39.99 -0.40 -2.15 16 12 C -0.23 -4.74 10.04 -39.35 -0.39 -5.13 16 13 C -0.07 -1.57 8.69 -39.43 -0.34 -1.91 16 14 C 0.02 0.49 6.34 -83.20 -0.53 -0.04 16 15 N -0.62 -11.75 4.97 -10.34 -0.05 -11.80 16 16 C 0.55 9.82 7.62 -12.35 -0.09 9.73 16 17 O -0.53 -10.96 13.79 5.32 0.07 -10.88 16 18 C -0.14 -2.07 5.89 -104.83 -0.62 -2.69 16 19 C 0.12 1.64 10.71 -17.13 -0.18 1.46 16 20 N -0.46 -5.83 10.34 -12.85 -0.13 -5.96 16 21 C 0.09 0.98 11.16 -17.39 -0.19 0.78 16 22 C 0.04 0.46 7.33 -39.33 -0.29 0.17 16 23 F -0.13 -1.44 17.28 2.25 0.04 -1.40 16 24 C -0.06 -0.72 9.70 -38.79 -0.38 -1.09 16 25 H 0.29 6.60 8.30 -40.82 -0.34 6.26 16 26 H 0.10 2.37 4.42 -52.48 -0.23 2.14 16 27 H 0.10 1.73 8.06 -52.48 -0.42 1.31 16 28 H 0.10 1.79 8.06 -52.48 -0.42 1.36 16 29 H 0.12 2.48 6.15 -52.49 -0.32 2.16 16 30 H 0.41 6.73 5.65 -40.82 -0.23 6.50 16 31 H 0.17 2.02 6.43 -52.49 -0.34 1.68 16 32 H 0.17 1.30 8.06 -52.49 -0.42 0.88 16 33 H 0.16 2.02 7.73 -52.49 -0.41 1.62 16 LS Contribution 289.28 15.07 4.36 4.36 Total: -1.00 -28.01 289.28 -6.12 -34.13 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -2.35 Total: 9.20 kcal Atomic # 6 Polarization: -9.47 SS G_CDS: -4.68 Total: -14.15 kcal Atomic # 7 Polarization: -37.85 SS G_CDS: 0.59 Total: -37.26 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.07 Total: -10.88 kcal Atomic # 9 Polarization: -1.44 SS G_CDS: 0.04 Total: -1.40 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -4.15 Total: 16.00 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -28.01 -6.12 -34.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336489039.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.500 kcal (2) G-P(sol) polarization free energy of solvation -28.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds