Wall clock time and date at job start Tue Mar 31 2020 05:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30851 * 1 3 3 Si 1.86799 * 119.99958 * 2 1 4 4 H 1.48499 * 109.47478 * 272.49842 * 3 2 1 5 5 H 1.48503 * 109.47186 * 32.50008 * 3 2 1 6 6 H 1.48502 * 109.47314 * 152.49651 * 3 2 1 7 7 C 1.39965 * 119.99998 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00188 * 347.53916 * 7 2 1 9 9 C 1.41051 * 119.99766 * 167.53645 * 7 2 1 10 10 C 1.40740 * 120.30819 * 328.80079 * 9 7 2 11 11 C 1.36448 * 119.95119 * 180.29874 * 10 9 7 12 12 C 1.38881 * 120.58142 * 359.71002 * 11 10 9 13 13 C 1.38208 * 120.62101 * 359.97438 * 12 11 10 14 14 C 1.38679 * 120.03123 * 0.02847 * 13 12 11 15 15 N 1.39003 * 120.28733 * 179.97438 * 14 13 12 16 16 C 1.34780 * 119.99899 * 34.25639 * 15 14 13 17 17 O 1.21557 * 120.00004 * 355.24868 * 16 15 14 18 18 C 1.47797 * 119.99710 * 175.52638 * 16 15 14 19 19 C 1.39581 * 120.55105 * 359.44348 * 18 16 15 20 20 N 1.31654 * 120.61852 * 179.77554 * 19 18 16 21 21 C 1.31947 * 121.90873 * 0.48457 * 20 19 18 22 22 C 1.38542 * 121.04879 * 359.78203 * 21 20 19 23 23 F 1.35095 * 120.36971 * 179.97438 * 22 21 20 24 24 C 1.38611 * 119.25587 * 359.96715 * 22 21 20 25 25 H 0.96998 * 119.99642 * 359.97438 * 1 2 3 26 26 H 1.08010 * 120.02295 * 359.97438 * 10 9 7 27 27 H 1.08003 * 119.71297 * 179.72379 * 11 10 9 28 28 H 1.08003 * 119.69078 * 180.02562 * 12 11 10 29 29 H 1.08000 * 119.98502 * 179.97438 * 13 12 11 30 30 H 0.97002 * 120.00362 * 214.24263 * 15 14 13 31 31 H 1.08002 * 119.69249 * 0.02562 * 19 18 16 32 32 H 1.07998 * 119.47402 * 179.74867 * 21 20 19 33 33 H 1.07998 * 120.86596 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 2.4372 2.0770 -1.3987 5 1 1.4674 2.6368 0.7523 6 1 3.5655 1.4256 0.6466 7 6 2.0083 -1.2121 0.0005 8 1 1.4875 -2.1363 0.2028 9 6 3.3939 -1.2266 -0.2631 10 6 3.9633 -0.2689 -1.1230 11 6 5.3036 -0.2934 -1.3777 12 6 6.1170 -1.2537 -0.7904 13 6 5.5841 -2.2014 0.0628 14 6 4.2252 -2.2002 0.3396 15 7 3.6835 -3.1512 1.1965 16 6 4.4003 -3.5982 2.2467 17 8 5.5509 -3.2355 2.3957 18 6 3.7893 -4.5342 3.2136 19 6 2.4673 -4.9537 3.0568 20 7 1.9231 -5.7908 3.9149 21 6 2.5906 -6.2574 4.9530 22 6 3.9053 -5.8858 5.1829 23 9 4.5757 -6.3715 6.2505 24 6 4.5252 -5.0103 4.3051 25 1 -0.4849 0.8401 0.0004 26 1 3.3390 0.4816 -1.5850 27 1 5.7358 0.4406 -2.0417 28 1 7.1761 -1.2595 -1.0018 29 1 6.2261 -2.9438 0.5136 30 1 2.7895 -3.4930 1.0388 31 1 1.8866 -4.5912 2.2214 32 1 2.1042 -6.9394 5.6346 33 1 5.5492 -4.7036 4.4592 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336489039.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:05 Heat of formation + Delta-G solvation = -34.319696 kcal Electronic energy + Delta-G solvation = -21264.354061 eV Core-core repulsion = 17782.758106 eV Total energy + Delta-G solvation = -3481.595955 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.086 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.11281 -41.91707 -40.62106 -39.09228 -35.77169 -35.51228 -33.78477 -32.42182 -32.28862 -30.26343 -27.13164 -25.96407 -24.79933 -23.84200 -22.55259 -21.48237 -19.61030 -19.33494 -18.74547 -18.14414 -18.03015 -17.17753 -17.01916 -16.92484 -16.26576 -15.88675 -15.56933 -15.29025 -15.00169 -14.85471 -14.51008 -14.37730 -14.21936 -13.95792 -13.49742 -13.46866 -12.89780 -12.73991 -12.27958 -11.83791 -11.71564 -11.44590 -11.23910 -11.16112 -10.88743 -10.57383 -10.21736 -9.50031 -8.94648 -8.87623 -6.44724 -0.69811 -0.21577 0.67300 0.82188 1.27514 1.38591 1.49013 1.69233 2.05429 2.12377 2.52923 2.65779 2.83084 3.10870 3.45852 3.50897 3.54905 3.62228 3.94297 4.28680 4.33000 4.43364 4.58919 4.66624 4.74388 4.80385 4.92792 5.17345 5.31207 5.33106 5.58650 5.67050 5.88735 5.99105 6.08535 6.36246 6.45619 6.52311 6.74316 6.80378 7.13158 8.18351 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.019642 B = 0.004912 C = 0.004197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.185124 B = 5698.599954 C = 6669.717130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.054 3.946 3 Si 0.955 3.045 4 H -0.256 1.256 5 H -0.285 1.285 6 H -0.260 1.260 7 C -0.470 4.470 8 H 0.077 0.923 9 C 0.067 3.933 10 C -0.239 4.239 11 C -0.089 4.089 12 C -0.217 4.217 13 C -0.089 4.089 14 C 0.021 3.979 15 N -0.627 5.627 16 C 0.551 3.449 17 O -0.559 6.559 18 C -0.159 4.159 19 C 0.130 3.870 20 N -0.469 5.469 21 C 0.109 3.891 22 C 0.046 3.954 23 F -0.123 7.123 24 C -0.055 4.055 25 H 0.293 0.707 26 H 0.104 0.896 27 H 0.129 0.871 28 H 0.128 0.872 29 H 0.120 0.880 30 H 0.413 0.587 31 H 0.177 0.823 32 H 0.209 0.791 33 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.272 -8.489 6.663 11.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.161 4.161 3 Si 0.781 3.219 4 H -0.182 1.182 5 H -0.212 1.212 6 H -0.184 1.184 7 C -0.500 4.500 8 H 0.095 0.905 9 C 0.063 3.937 10 C -0.259 4.259 11 C -0.108 4.108 12 C -0.236 4.236 13 C -0.109 4.109 14 C -0.073 4.073 15 N -0.269 5.269 16 C 0.339 3.661 17 O -0.440 6.440 18 C -0.165 4.165 19 C -0.028 4.028 20 N -0.176 5.176 21 C -0.050 4.050 22 C 0.024 3.976 23 F -0.101 7.101 24 C -0.082 4.082 25 H 0.103 0.897 26 H 0.122 0.878 27 H 0.147 0.853 28 H 0.146 0.854 29 H 0.137 0.863 30 H 0.251 0.749 31 H 0.194 0.806 32 H 0.226 0.774 33 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 3.909 -8.442 6.702 11.465 hybrid contribution 0.551 0.875 0.129 1.042 sum 4.459 -7.567 6.831 11.127 Atomic orbital electron populations 1.69663 1.08622 1.31231 1.37469 1.26575 0.95275 1.03490 0.90771 0.85654 0.79255 0.77528 0.79494 1.18198 1.21241 1.18425 1.19229 0.91702 0.95424 1.43607 0.90482 1.17708 0.93199 0.91087 0.91745 1.20839 0.96306 1.03995 1.04718 1.20762 0.93147 0.98169 0.98678 1.20773 0.99702 0.99219 1.03914 1.21020 0.93532 0.99295 0.97052 1.17758 0.92772 0.97060 0.99756 1.42725 1.19457 1.39550 1.25193 1.18282 0.85814 0.81196 0.80798 1.90712 1.18067 1.59604 1.75598 1.20679 0.96525 1.01474 0.97785 1.23303 0.90856 0.91223 0.97400 1.67889 1.36723 1.09932 1.03097 1.23724 0.89264 0.97104 0.94891 1.18583 0.92864 0.98838 0.87304 1.91558 1.80033 1.86064 1.52481 1.21834 1.01852 0.93166 0.91360 0.89702 0.87825 0.85349 0.85400 0.86253 0.74855 0.80609 0.77437 0.82227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -43.16 13.93 21.83 0.30 -42.85 16 2 C 0.05 2.71 5.47 85.26 0.47 3.17 16 3 Si 0.95 41.44 24.41 68.60 1.67 43.11 16 4 H -0.26 -10.46 6.66 99.48 0.66 -9.80 16 5 H -0.29 -11.87 7.11 99.48 0.71 -11.16 16 6 H -0.26 -11.88 6.69 99.48 0.67 -11.22 16 7 C -0.47 -23.61 9.13 23.38 0.21 -23.40 16 8 H 0.08 3.90 7.08 -2.91 -0.02 3.88 16 9 C 0.07 3.18 5.14 -21.17 -0.11 3.07 16 10 C -0.24 -10.80 6.95 22.46 0.16 -10.64 16 11 C -0.09 -3.56 9.97 22.01 0.22 -3.34 16 12 C -0.22 -8.50 10.04 22.42 0.22 -8.28 16 13 C -0.09 -3.78 8.69 22.37 0.19 -3.59 16 14 C 0.02 0.93 6.34 38.91 0.25 1.17 16 15 N -0.63 -23.92 4.97 -304.91 -1.52 -25.43 16 16 C 0.55 19.88 7.62 86.77 0.66 20.55 16 17 O -0.56 -23.21 13.79 -3.89 -0.05 -23.26 16 18 C -0.16 -4.52 5.89 -20.00 -0.12 -4.64 16 19 C 0.13 3.31 10.71 85.04 0.91 4.22 16 20 N -0.47 -11.01 10.34 -194.57 -2.01 -13.02 16 21 C 0.11 2.02 11.16 84.75 0.95 2.97 16 22 C 0.05 0.94 7.33 22.43 0.16 1.11 16 23 F -0.12 -2.44 17.28 44.97 0.78 -1.66 16 24 C -0.06 -1.37 9.70 22.78 0.22 -1.15 16 25 H 0.29 13.68 8.30 -92.71 -0.77 12.91 16 26 H 0.10 4.63 4.42 -2.91 -0.01 4.62 16 27 H 0.13 4.22 8.06 -2.91 -0.02 4.20 16 28 H 0.13 4.22 8.06 -2.91 -0.02 4.19 16 29 H 0.12 5.00 6.15 -2.91 -0.02 4.98 16 30 H 0.41 14.11 5.65 -92.71 -0.52 13.58 16 31 H 0.18 4.15 6.43 -2.91 -0.02 4.14 16 32 H 0.21 2.25 8.06 -2.91 -0.02 2.23 16 33 H 0.16 3.93 7.73 -2.91 -0.02 3.91 16 Total: -1.00 -59.58 289.28 4.15 -55.43 By element: Atomic # 1 Polarization: 25.89 SS G_CDS: 0.58 Total: 26.47 kcal Atomic # 6 Polarization: -23.17 SS G_CDS: 4.40 Total: -18.78 kcal Atomic # 7 Polarization: -78.08 SS G_CDS: -3.23 Total: -81.31 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: -0.05 Total: -23.26 kcal Atomic # 9 Polarization: -2.44 SS G_CDS: 0.78 Total: -1.66 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 1.67 Total: 43.11 kcal Total: -59.58 4.15 -55.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336489039.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.106 kcal (2) G-P(sol) polarization free energy of solvation -59.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds