Wall clock time and date at job start Tue Mar 31 2020 05:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30748 * 1 3 3 Si 1.86795 * 119.99848 * 2 1 4 4 H 1.48504 * 109.47422 * 270.00321 * 3 2 1 5 5 H 1.48501 * 109.47327 * 30.00136 * 3 2 1 6 6 H 1.48498 * 109.47114 * 150.00087 * 3 2 1 7 7 C 1.40029 * 119.99999 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99574 * 161.47971 * 7 2 1 9 9 C 1.41540 * 120.00155 * 341.47659 * 7 2 1 10 10 C 1.41181 * 120.99440 * 152.70830 * 9 7 2 11 11 C 1.37587 * 119.02040 * 180.02562 * 10 9 7 12 12 N 1.32082 * 121.11157 * 0.02562 * 11 10 9 13 13 C 1.32481 * 122.23011 * 359.97438 * 12 11 10 14 14 N 1.39382 * 119.58683 * 179.97438 * 13 12 11 15 15 C 1.34785 * 119.99608 * 354.25905 * 14 13 12 16 16 O 1.21565 * 120.00016 * 354.95027 * 15 14 13 17 17 C 1.47650 * 119.99630 * 174.94692 * 15 14 13 18 18 C 1.39676 * 120.17082 * 0.02562 * 17 15 14 19 19 C 1.37857 * 119.87705 * 179.97438 * 18 17 15 20 20 C 1.38464 * 120.21764 * 359.97438 * 19 18 17 21 21 C 1.38200 * 120.34466 * 0.02562 * 20 19 18 22 22 C 1.38321 * 120.12038 * 359.70038 * 21 20 19 23 23 F 1.35095 * 120.11359 * 180.28100 * 22 21 20 24 24 C 1.38630 * 120.83588 * 0.02562 * 13 12 11 25 25 H 0.96992 * 119.99941 * 0.02562 * 1 2 3 26 26 H 1.07998 * 120.49294 * 359.97438 * 10 9 7 27 27 H 1.08001 * 119.44672 * 180.02562 * 11 10 9 28 28 H 0.96998 * 120.00622 * 174.25732 * 14 13 12 29 29 H 1.08001 * 120.06069 * 359.97438 * 18 17 15 30 30 H 1.07999 * 119.89086 * 179.97438 * 19 18 17 31 31 H 1.08003 * 119.82845 * 179.97438 * 20 19 18 32 32 H 1.08005 * 119.94010 * 179.97438 * 21 20 19 33 33 H 1.07998 * 120.60259 * 180.02562 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4889 2.0465 -1.4001 5 1 1.4389 2.6527 0.7001 6 1 3.5390 1.4402 0.7000 7 6 2.0076 -1.2127 -0.0005 8 1 3.0457 -1.2367 -0.2977 9 6 1.3549 -2.4069 0.3883 10 6 1.7743 -3.6598 -0.1092 11 6 1.1104 -4.7949 0.2955 12 7 0.0938 -4.7278 1.1361 13 6 -0.3385 -3.5777 1.6316 14 7 -1.4169 -3.5709 2.5147 15 6 -2.0861 -4.7126 2.7699 16 8 -1.8092 -5.7283 2.1621 17 6 -3.1555 -4.7297 3.7879 18 6 -3.4769 -3.5646 4.4880 19 6 -4.4767 -3.5872 5.4368 20 6 -5.1636 -4.7609 5.6974 21 6 -4.8532 -5.9189 5.0100 22 6 -3.8563 -5.9109 4.0511 23 9 -3.5568 -7.0416 3.3753 24 6 0.2673 -2.3808 1.2821 25 1 -0.4850 0.8400 -0.0004 26 1 2.6035 -3.7262 -0.7980 27 1 1.4257 -5.7570 -0.0805 28 1 -1.6857 -2.7445 2.9456 29 1 -2.9430 -2.6477 4.2865 30 1 -4.7251 -2.6866 5.9786 31 1 -5.9456 -4.7716 6.4423 32 1 -5.3929 -6.8309 5.2188 33 1 -0.0880 -1.4455 1.6886 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336568188.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:02 Heat of formation + Delta-G solvation = -13.385649 kcal Electronic energy + Delta-G solvation = -21119.081056 eV Core-core repulsion = 17638.392870 eV Total energy + Delta-G solvation = -3480.688186 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.086 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.76870 -39.98576 -38.66683 -37.49638 -34.39129 -33.81555 -31.58837 -30.62241 -30.53988 -28.50530 -26.01487 -24.27342 -22.86724 -22.04087 -21.44067 -19.87841 -18.22308 -17.64414 -17.04065 -16.38978 -15.67542 -15.61597 -15.22958 -15.10704 -14.52156 -14.41477 -14.25848 -13.98019 -13.53583 -13.12773 -12.85784 -12.65820 -12.53177 -12.16315 -12.14684 -11.50033 -11.45551 -11.25273 -10.90607 -10.33827 -10.22277 -9.79237 -9.49528 -9.34089 -9.28845 -8.86256 -8.01905 -7.77607 -7.06900 -6.87082 -4.63066 0.64467 1.00444 2.56391 2.76130 2.99781 3.04088 3.10394 3.26152 3.46647 3.83273 3.87032 4.12396 4.50898 4.62753 4.64221 4.77893 5.05432 5.07199 5.50788 5.63443 5.78839 5.83656 5.97155 6.00754 6.12813 6.53762 6.57852 6.64981 6.77593 6.89715 7.04293 7.33810 7.40480 7.71944 7.86734 8.15473 8.37543 8.65897 8.70947 8.80470 9.64394 10.04634 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.023029 B = 0.004188 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.563888 B = 6684.222166 C = 7778.696088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.081 3.919 3 Si 0.909 3.091 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.461 4.461 8 H 0.083 0.917 9 C 0.148 3.852 10 C -0.282 4.282 11 C 0.121 3.879 12 N -0.555 5.555 13 C 0.339 3.661 14 N -0.652 5.652 15 C 0.539 3.461 16 O -0.463 6.463 17 C -0.163 4.163 18 C -0.061 4.061 19 C -0.140 4.140 20 C -0.072 4.072 21 C -0.167 4.167 22 C 0.156 3.844 23 F -0.114 7.114 24 C -0.241 4.241 25 H 0.282 0.718 26 H 0.103 0.897 27 H 0.125 0.875 28 H 0.406 0.594 29 H 0.137 0.863 30 H 0.135 0.865 31 H 0.135 0.865 32 H 0.140 0.860 33 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.325 -1.250 10.985 14.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.139 4.139 3 Si 0.732 3.268 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.183 1.183 7 C -0.492 4.492 8 H 0.101 0.899 9 C 0.140 3.860 10 C -0.306 4.306 11 C -0.033 4.033 12 N -0.274 5.274 13 C 0.114 3.886 14 N -0.298 5.298 15 C 0.324 3.676 16 O -0.333 6.333 17 C -0.167 4.167 18 C -0.079 4.079 19 C -0.158 4.158 20 C -0.091 4.091 21 C -0.186 4.186 22 C 0.136 3.864 23 F -0.092 7.092 24 C -0.266 4.266 25 H 0.093 0.907 26 H 0.122 0.878 27 H 0.142 0.858 28 H 0.242 0.758 29 H 0.155 0.845 30 H 0.153 0.847 31 H 0.153 0.847 32 H 0.158 0.842 33 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -9.779 -2.713 10.788 14.811 hybrid contribution 0.597 1.924 -0.223 2.027 sum -9.182 -0.788 10.565 14.020 Atomic orbital electron populations 1.69795 1.07733 1.29533 1.34179 1.25933 0.94701 1.01404 0.91816 0.86308 0.80730 0.80323 0.79394 1.19360 1.20011 1.18304 1.19535 0.98589 0.90895 1.40163 0.89874 1.17535 0.89222 0.92318 0.86957 1.21929 1.06478 0.94013 1.08133 1.21777 0.91167 0.96956 0.93442 1.67194 1.17064 1.26350 1.16757 1.18103 0.88063 0.90940 0.91484 1.43268 1.30740 1.10976 1.44832 1.18057 0.82000 0.84451 0.83130 1.90914 1.63509 1.31682 1.47228 1.20352 1.00523 0.94200 1.01655 1.21316 0.96055 0.96723 0.93849 1.21149 0.96862 0.98798 0.98987 1.21165 0.98343 0.91726 0.97821 1.21152 0.98984 1.00610 0.97826 1.17748 0.94690 0.82095 0.91904 1.91606 1.91897 1.47858 1.77858 1.21391 1.04163 0.95149 1.05894 0.90677 0.87841 0.85750 0.75803 0.84542 0.84742 0.84714 0.84207 0.86126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.33 11.26 55.55 0.63 -18.70 16 2 C 0.08 1.94 5.13 -17.34 -0.09 1.85 16 3 Si 0.91 17.66 29.60 -169.99 -5.03 12.63 16 4 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 5 H -0.28 -5.19 7.11 56.52 0.40 -4.79 16 6 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 7 C -0.46 -11.77 9.09 -37.65 -0.34 -12.11 16 8 H 0.08 2.03 7.91 -52.48 -0.42 1.62 16 9 C 0.15 3.88 5.55 -106.55 -0.59 3.29 16 10 C -0.28 -6.95 9.90 -38.70 -0.38 -7.33 16 11 C 0.12 2.94 11.15 -17.68 -0.20 2.74 16 12 N -0.55 -14.45 7.89 -12.53 -0.10 -14.55 16 13 C 0.34 8.32 7.40 -154.77 -1.15 7.17 16 14 N -0.65 -13.12 5.33 -12.41 -0.07 -13.19 16 15 C 0.54 10.96 7.72 -12.41 -0.10 10.87 16 16 O -0.46 -11.41 13.63 5.31 0.07 -11.33 16 17 C -0.16 -2.53 5.88 -104.92 -0.62 -3.14 16 18 C -0.06 -0.70 9.54 -39.18 -0.37 -1.07 16 19 C -0.14 -1.24 10.03 -39.64 -0.40 -1.63 16 20 C -0.07 -0.61 10.03 -39.51 -0.40 -1.00 16 21 C -0.17 -1.76 10.01 -39.56 -0.40 -2.16 16 22 C 0.16 2.31 7.29 -38.95 -0.28 2.03 16 23 F -0.11 -2.01 15.55 2.25 0.04 -1.97 16 24 C -0.24 -6.07 8.60 -38.47 -0.33 -6.40 16 25 H 0.28 6.25 8.29 -40.82 -0.34 5.91 16 26 H 0.10 2.33 8.06 -52.49 -0.42 1.91 16 27 H 0.13 2.65 8.06 -52.49 -0.42 2.22 16 28 H 0.41 6.54 6.74 -40.82 -0.28 6.27 16 29 H 0.14 1.31 6.42 -52.49 -0.34 0.98 16 30 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 31 H 0.13 0.69 8.06 -52.48 -0.42 0.27 16 32 H 0.14 1.15 8.06 -52.48 -0.42 0.72 16 33 H 0.12 2.98 6.53 -52.49 -0.34 2.64 16 LS Contribution 298.08 15.07 4.49 4.49 Total: -1.00 -32.58 298.08 -8.23 -40.81 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -2.62 Total: 8.72 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: -5.64 Total: -6.91 kcal Atomic # 7 Polarization: -46.89 SS G_CDS: 0.46 Total: -46.43 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: 0.07 Total: -11.33 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.04 Total: -1.97 kcal Atomic # 14 Polarization: 17.66 SS G_CDS: -5.03 Total: 12.63 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -32.58 -8.23 -40.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336568188.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.425 kcal (2) G-P(sol) polarization free energy of solvation -32.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds