Wall clock time and date at job start Tue Mar 31 2020 05:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30748 * 1 3 3 Si 1.86795 * 119.99848 * 2 1 4 4 H 1.48504 * 109.47422 * 270.00321 * 3 2 1 5 5 H 1.48501 * 109.47327 * 30.00136 * 3 2 1 6 6 H 1.48498 * 109.47114 * 150.00087 * 3 2 1 7 7 C 1.40029 * 119.99999 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99574 * 161.47971 * 7 2 1 9 9 C 1.41540 * 120.00155 * 341.47659 * 7 2 1 10 10 C 1.41181 * 120.99440 * 152.70830 * 9 7 2 11 11 C 1.37587 * 119.02040 * 180.02562 * 10 9 7 12 12 N 1.32082 * 121.11157 * 0.02562 * 11 10 9 13 13 C 1.32481 * 122.23011 * 359.97438 * 12 11 10 14 14 N 1.39382 * 119.58683 * 179.97438 * 13 12 11 15 15 C 1.34785 * 119.99608 * 354.25905 * 14 13 12 16 16 O 1.21565 * 120.00016 * 354.95027 * 15 14 13 17 17 C 1.47650 * 119.99630 * 174.94692 * 15 14 13 18 18 C 1.39676 * 120.17082 * 0.02562 * 17 15 14 19 19 C 1.37857 * 119.87705 * 179.97438 * 18 17 15 20 20 C 1.38464 * 120.21764 * 359.97438 * 19 18 17 21 21 C 1.38200 * 120.34466 * 0.02562 * 20 19 18 22 22 C 1.38321 * 120.12038 * 359.70038 * 21 20 19 23 23 F 1.35095 * 120.11359 * 180.28100 * 22 21 20 24 24 C 1.38630 * 120.83588 * 0.02562 * 13 12 11 25 25 H 0.96992 * 119.99941 * 0.02562 * 1 2 3 26 26 H 1.07998 * 120.49294 * 359.97438 * 10 9 7 27 27 H 1.08001 * 119.44672 * 180.02562 * 11 10 9 28 28 H 0.96998 * 120.00622 * 174.25732 * 14 13 12 29 29 H 1.08001 * 120.06069 * 359.97438 * 18 17 15 30 30 H 1.07999 * 119.89086 * 179.97438 * 19 18 17 31 31 H 1.08003 * 119.82845 * 179.97438 * 20 19 18 32 32 H 1.08005 * 119.94010 * 179.97438 * 21 20 19 33 33 H 1.07998 * 120.60259 * 180.02562 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4889 2.0465 -1.4001 5 1 1.4389 2.6527 0.7001 6 1 3.5390 1.4402 0.7000 7 6 2.0076 -1.2127 -0.0005 8 1 3.0457 -1.2367 -0.2977 9 6 1.3549 -2.4069 0.3883 10 6 1.7743 -3.6598 -0.1092 11 6 1.1104 -4.7949 0.2955 12 7 0.0938 -4.7278 1.1361 13 6 -0.3385 -3.5777 1.6316 14 7 -1.4169 -3.5709 2.5147 15 6 -2.0861 -4.7126 2.7699 16 8 -1.8092 -5.7283 2.1621 17 6 -3.1555 -4.7297 3.7879 18 6 -3.4769 -3.5646 4.4880 19 6 -4.4767 -3.5872 5.4368 20 6 -5.1636 -4.7609 5.6974 21 6 -4.8532 -5.9189 5.0100 22 6 -3.8563 -5.9109 4.0511 23 9 -3.5568 -7.0416 3.3753 24 6 0.2673 -2.3808 1.2821 25 1 -0.4850 0.8400 -0.0004 26 1 2.6035 -3.7262 -0.7980 27 1 1.4257 -5.7570 -0.0805 28 1 -1.6857 -2.7445 2.9456 29 1 -2.9430 -2.6477 4.2865 30 1 -4.7251 -2.6866 5.9786 31 1 -5.9456 -4.7716 6.4423 32 1 -5.3929 -6.8309 5.2188 33 1 -0.0880 -1.4455 1.6886 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336568188.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:01 Heat of formation + Delta-G solvation = -33.139026 kcal Electronic energy + Delta-G solvation = -21119.937627 eV Core-core repulsion = 17638.392870 eV Total energy + Delta-G solvation = -3481.544757 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.086 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.93907 -41.49744 -40.04298 -38.99648 -36.18945 -35.60440 -32.76673 -32.38812 -31.48396 -30.24274 -27.93424 -25.49248 -23.93019 -23.87308 -22.89057 -21.48575 -19.63375 -19.31151 -18.17262 -17.75969 -17.15283 -16.87169 -16.82640 -16.35138 -16.14264 -15.98648 -15.69107 -15.49713 -14.94693 -14.47495 -14.38418 -14.24916 -14.14288 -13.30925 -13.19966 -13.01813 -12.95165 -12.64127 -12.30885 -12.12094 -11.95873 -11.56964 -11.15911 -11.12288 -10.19863 -9.97638 -9.80263 -9.67320 -8.92198 -8.70026 -6.57978 -0.36905 0.15356 0.76469 0.97050 1.41853 1.51795 1.58434 1.90051 1.96886 2.20681 2.65776 2.80817 3.17547 3.42752 3.67963 3.69486 3.98428 4.10613 4.27015 4.29814 4.65155 4.72826 4.78508 4.88287 4.99295 5.00178 5.03213 5.18985 5.21235 5.33441 5.42706 5.56318 5.80733 5.86420 6.08125 6.39810 6.50800 6.75435 6.80367 7.15753 7.77116 8.25661 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.023029 B = 0.004188 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.563888 B = 6684.222166 C = 7778.696088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.044 3.956 3 Si 0.987 3.013 4 H -0.263 1.263 5 H -0.262 1.262 6 H -0.258 1.258 7 C -0.489 4.489 8 H 0.086 0.914 9 C 0.119 3.881 10 C -0.295 4.295 11 C 0.113 3.887 12 N -0.584 5.584 13 C 0.333 3.667 14 N -0.644 5.644 15 C 0.534 3.466 16 O -0.519 6.519 17 C -0.193 4.193 18 C -0.061 4.061 19 C -0.125 4.125 20 C -0.050 4.050 21 C -0.161 4.161 22 C 0.120 3.880 23 F -0.143 7.143 24 C -0.255 4.255 25 H 0.294 0.706 26 H 0.118 0.882 27 H 0.149 0.851 28 H 0.422 0.578 29 H 0.150 0.850 30 H 0.177 0.823 31 H 0.183 0.817 32 H 0.164 0.836 33 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.990 0.968 13.245 17.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.174 4.174 3 Si 0.806 3.194 4 H -0.188 1.188 5 H -0.186 1.186 6 H -0.182 1.182 7 C -0.519 4.519 8 H 0.104 0.896 9 C 0.111 3.889 10 C -0.319 4.319 11 C -0.040 4.040 12 N -0.304 5.304 13 C 0.107 3.893 14 N -0.292 5.292 15 C 0.323 3.677 16 O -0.393 6.393 17 C -0.198 4.198 18 C -0.080 4.080 19 C -0.143 4.143 20 C -0.067 4.067 21 C -0.179 4.179 22 C 0.100 3.900 23 F -0.122 7.122 24 C -0.280 4.280 25 H 0.105 0.895 26 H 0.136 0.864 27 H 0.167 0.833 28 H 0.262 0.738 29 H 0.168 0.832 30 H 0.194 0.806 31 H 0.200 0.800 32 H 0.182 0.818 33 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -11.472 -0.480 13.073 17.400 hybrid contribution 0.988 1.256 -0.850 1.809 sum -10.485 0.776 12.224 16.123 Atomic orbital electron populations 1.69825 1.09194 1.31277 1.33458 1.26812 0.95462 1.04558 0.90593 0.85140 0.79182 0.75445 0.79584 1.18797 1.18587 1.18173 1.19842 0.98983 0.91844 1.41257 0.89605 1.17968 0.89985 0.93338 0.87586 1.22120 1.07209 0.93830 1.08757 1.22214 0.90721 0.98080 0.92990 1.67312 1.18006 1.27216 1.17858 1.18379 0.88796 0.90482 0.91617 1.43251 1.29664 1.12179 1.44065 1.18886 0.82297 0.83338 0.83226 1.90863 1.65501 1.33349 1.49589 1.20082 1.00669 0.96526 1.02483 1.21563 0.96932 0.95599 0.93894 1.21664 0.94756 1.00601 0.97257 1.21780 0.97936 0.90189 0.96836 1.21507 0.97392 1.02767 0.96251 1.18300 0.96775 0.81210 0.93747 1.91525 1.92459 1.49275 1.78905 1.21382 1.04774 0.95270 1.06579 0.89520 0.86377 0.83346 0.73845 0.83227 0.80585 0.79959 0.81837 0.86128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.81 11.26 21.84 0.25 -39.57 16 2 C 0.04 2.06 5.13 85.29 0.44 2.50 16 3 Si 0.99 35.36 29.60 68.60 2.03 37.39 16 4 H -0.26 -9.19 7.11 99.48 0.71 -8.48 16 5 H -0.26 -8.75 7.11 99.48 0.71 -8.05 16 6 H -0.26 -9.14 7.11 99.48 0.71 -8.43 16 7 C -0.49 -25.34 9.09 23.52 0.21 -25.13 16 8 H 0.09 4.25 7.91 -2.91 -0.02 4.23 16 9 C 0.12 6.46 5.55 -21.12 -0.12 6.34 16 10 C -0.30 -15.05 9.90 22.84 0.23 -14.82 16 11 C 0.11 5.73 11.15 84.50 0.94 6.67 16 12 N -0.58 -31.82 7.89 -193.57 -1.53 -33.35 16 13 C 0.33 17.05 7.40 132.79 0.98 18.03 16 14 N -0.64 -26.93 5.33 -311.43 -1.66 -28.59 16 15 C 0.53 22.84 7.72 86.73 0.67 23.51 16 16 O -0.52 -27.27 13.63 -3.92 -0.05 -27.32 16 17 C -0.19 -6.06 5.88 -20.06 -0.12 -6.18 16 18 C -0.06 -1.28 9.54 22.53 0.21 -1.06 16 19 C -0.13 -1.61 10.03 22.23 0.22 -1.38 16 20 C -0.05 -0.58 10.03 22.31 0.22 -0.35 16 21 C -0.16 -2.97 10.01 22.28 0.22 -2.74 16 22 C 0.12 3.58 7.29 22.68 0.17 3.75 16 23 F -0.14 -5.36 15.55 44.97 0.70 -4.66 16 24 C -0.25 -13.30 8.60 22.99 0.20 -13.10 16 25 H 0.29 12.77 8.29 -92.71 -0.77 12.00 16 26 H 0.12 5.47 8.06 -2.91 -0.02 5.44 16 27 H 0.15 6.50 8.06 -2.91 -0.02 6.48 16 28 H 0.42 13.92 6.74 -92.71 -0.63 13.29 16 29 H 0.15 2.59 6.42 -2.91 -0.02 2.57 16 30 H 0.18 0.90 8.06 -2.91 -0.02 0.88 16 31 H 0.18 0.51 8.06 -2.91 -0.02 0.49 16 32 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 33 H 0.12 6.13 6.53 -2.91 -0.02 6.11 16 Total: -1.00 -76.18 298.08 4.77 -71.41 By element: Atomic # 1 Polarization: 28.12 SS G_CDS: 0.55 Total: 28.66 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: 4.48 Total: -3.98 kcal Atomic # 7 Polarization: -98.56 SS G_CDS: -2.94 Total: -101.51 kcal Atomic # 8 Polarization: -27.27 SS G_CDS: -0.05 Total: -27.32 kcal Atomic # 9 Polarization: -5.36 SS G_CDS: 0.70 Total: -4.66 kcal Atomic # 14 Polarization: 35.36 SS G_CDS: 2.03 Total: 37.39 kcal Total: -76.18 4.77 -71.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336568188.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.276 kcal (2) G-P(sol) polarization free energy of solvation -76.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds