Wall clock time and date at job start Tue Mar 31 2020 05:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30635 * 1 3 3 Si 1.86797 * 120.00405 * 2 1 4 4 H 1.48502 * 109.47049 * 239.99935 * 3 2 1 5 5 H 1.48500 * 109.47149 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47401 * 119.99658 * 3 2 1 7 7 C 1.40238 * 119.99852 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00224 * 189.91538 * 7 2 1 9 9 C 1.41092 * 119.99854 * 9.91821 * 7 2 1 10 10 C 1.40908 * 120.09831 * 29.72587 * 9 7 2 11 11 C 1.36307 * 119.88599 * 180.27931 * 10 9 7 12 12 C 1.40031 * 120.10773 * 359.45203 * 11 10 9 13 13 C 1.47590 * 119.89963 * 180.27637 * 12 11 10 14 14 O 1.21598 * 119.99662 * 0.02562 * 13 12 11 15 15 N 1.34773 * 120.00393 * 180.02562 * 13 12 11 16 16 C 1.39379 * 120.00017 * 185.04604 * 15 13 12 17 17 C 1.39059 * 119.66884 * 174.68075 * 16 15 13 18 18 C 1.38348 * 119.12429 * 179.75167 * 17 16 15 19 19 C 1.39021 * 118.47561 * 0.51019 * 18 17 16 20 20 F 1.35106 * 120.36892 * 179.75280 * 19 18 17 21 21 C 1.38293 * 119.26856 * 359.73279 * 19 18 17 22 22 N 1.31944 * 120.81301 * 0.02562 * 21 19 18 23 23 C 1.40041 * 120.20817 * 0.30469 * 12 11 10 24 24 C 1.36302 * 120.10391 * 359.97072 * 23 12 11 25 25 H 0.97003 * 119.99887 * 359.97438 * 1 2 3 26 26 H 1.07994 * 120.05886 * 0.02562 * 10 9 7 27 27 H 1.08001 * 119.93928 * 179.73748 * 11 10 9 28 28 H 0.97006 * 120.00050 * 5.04311 * 15 13 12 29 29 H 1.08000 * 120.44014 * 359.97438 * 17 16 15 30 30 H 1.07995 * 120.76694 * 180.21511 * 18 17 16 31 31 H 1.07998 * 119.59334 * 180.02562 * 21 19 18 32 32 H 1.08001 * 119.94903 * 179.97438 * 23 12 11 33 33 H 1.08002 * 120.05672 * 180.02562 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6176 0.0000 4 1 3.0942 1.6962 -1.2125 5 1 1.2755 2.7464 -0.0006 6 1 3.0942 1.6964 1.2125 7 6 2.0075 -1.2145 0.0005 8 1 3.0754 -1.2215 0.1616 9 6 1.3178 -2.4273 -0.2094 10 6 0.1526 -2.4497 -1.0014 11 6 -0.5135 -3.6227 -1.1967 12 6 -0.0352 -4.8063 -0.6211 13 6 -0.7567 -6.0750 -0.8406 14 8 -1.7646 -6.0914 -1.5207 15 7 -0.2986 -7.2153 -0.2873 16 6 -0.9177 -8.4294 -0.5792 17 6 -0.3735 -9.6137 -0.0944 18 6 -1.0002 -10.8120 -0.3867 19 6 -2.1503 -10.7854 -1.1672 20 9 -2.7902 -11.9334 -1.4800 21 6 -2.6324 -9.5707 -1.6196 22 7 -2.0145 -8.4442 -1.3196 23 6 1.1252 -4.7899 0.1625 24 6 1.7949 -3.6207 0.3680 25 1 -0.4850 0.8401 0.0004 26 1 -0.2144 -1.5382 -1.4496 27 1 -1.4091 -3.6401 -1.8001 28 1 0.4622 -7.1911 0.3142 29 1 0.5245 -9.5980 0.5053 30 1 -0.6024 -11.7471 -0.0210 31 1 -3.5257 -9.5439 -2.2260 32 1 1.4902 -5.7052 0.6048 33 1 2.6901 -3.6090 0.9722 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336612033.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:26 Heat of formation + Delta-G solvation = -15.758190 kcal Electronic energy + Delta-G solvation = -20540.938352 eV Core-core repulsion = 17060.147284 eV Total energy + Delta-G solvation = -3480.791067 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.086 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.91609 -40.58057 -38.76500 -37.15161 -34.48079 -33.91419 -32.52043 -30.51996 -29.84126 -29.07620 -26.07331 -24.29414 -23.32150 -21.92372 -20.96874 -19.89291 -18.24249 -17.60856 -17.58070 -17.05865 -16.21656 -15.82412 -15.36773 -14.77821 -14.70137 -14.19452 -14.06206 -13.79917 -13.60568 -13.23821 -13.11889 -12.79514 -12.57752 -12.30649 -11.91374 -11.51610 -11.28850 -11.06598 -10.71840 -10.37882 -10.14423 -10.03698 -9.78473 -9.57500 -9.47305 -8.78665 -8.10124 -7.79877 -7.59220 -7.01914 -4.69115 0.89318 1.07946 2.13459 2.87946 2.92473 2.94799 2.96009 3.14480 3.51861 3.71903 3.94998 4.05760 4.40707 4.53403 4.62316 4.77177 5.07412 5.41624 5.46901 5.58235 5.77359 5.81088 5.87484 6.18723 6.33655 6.73200 6.75197 6.83054 6.95506 7.01017 7.33879 7.41249 7.49540 7.76521 7.83093 7.98776 8.16564 8.36434 8.56151 8.66559 8.87518 9.89386 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.059124 B = 0.002905 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 473.463790 B = 9637.311659 C =10043.587524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.776 5.776 2 C 0.071 3.929 3 Si 0.918 3.082 4 H -0.261 1.261 5 H -0.275 1.275 6 H -0.263 1.263 7 C -0.443 4.443 8 H 0.084 0.916 9 C 0.129 3.871 10 C -0.174 4.174 11 C -0.035 4.035 12 C -0.280 4.280 13 C 0.558 3.442 14 O -0.502 6.502 15 N -0.664 5.664 16 C 0.370 3.630 17 C -0.192 4.192 18 C -0.078 4.078 19 C -0.007 4.007 20 F -0.138 7.138 21 C 0.114 3.886 22 N -0.451 5.451 23 C -0.053 4.053 24 C -0.229 4.229 25 H 0.288 0.712 26 H 0.124 0.876 27 H 0.103 0.897 28 H 0.415 0.585 29 H 0.144 0.856 30 H 0.146 0.854 31 H 0.167 0.833 32 H 0.089 0.911 33 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.132 -12.754 1.268 12.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C -0.150 4.150 3 Si 0.742 3.258 4 H -0.185 1.185 5 H -0.200 1.200 6 H -0.187 1.187 7 C -0.471 4.471 8 H 0.102 0.898 9 C 0.126 3.874 10 C -0.194 4.194 11 C -0.055 4.055 12 C -0.285 4.285 13 C 0.353 3.647 14 O -0.375 6.375 15 N -0.309 5.309 16 C 0.137 3.863 17 C -0.216 4.216 18 C -0.104 4.104 19 C -0.030 4.030 20 F -0.117 7.117 21 C -0.046 4.046 22 N -0.165 5.165 23 C -0.072 4.072 24 C -0.248 4.248 25 H 0.099 0.901 26 H 0.142 0.858 27 H 0.121 0.879 28 H 0.253 0.747 29 H 0.162 0.838 30 H 0.164 0.836 31 H 0.184 0.816 32 H 0.107 0.893 33 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -0.108 -11.672 0.468 11.682 hybrid contribution 0.984 -0.305 0.749 1.273 sum 0.876 -11.976 1.217 12.070 Atomic orbital electron populations 1.69697 1.07780 1.30183 1.32302 1.26102 0.94948 1.01863 0.92098 0.86192 0.80035 0.79389 0.80227 1.18527 1.20010 1.18703 1.19816 0.96125 0.90452 1.40670 0.89765 1.17826 0.90956 0.92090 0.86509 1.21083 0.99064 0.96770 1.02442 1.20502 0.97319 0.91554 0.96076 1.18835 1.02246 0.91843 1.15587 1.18899 0.84263 0.82978 0.78551 1.90772 1.23998 1.85346 1.37412 1.43917 1.34023 1.04620 1.48391 1.18718 0.89731 0.86233 0.91610 1.21406 1.03340 0.90723 1.06143 1.21325 0.93591 0.99317 0.96200 1.18687 0.96176 0.83334 1.04803 1.91481 1.80966 1.47550 1.91725 1.22879 0.99226 0.85492 0.97038 1.67896 1.07344 1.27841 1.13408 1.20359 0.94131 0.96512 0.96230 1.20728 1.03405 0.93422 1.07259 0.90084 0.85825 0.87925 0.74659 0.83791 0.83582 0.81614 0.89278 0.88259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.66 10.85 55.56 0.60 -18.06 16 2 C 0.07 1.63 5.26 -17.31 -0.09 1.54 16 3 Si 0.92 17.09 29.57 -169.99 -5.03 12.06 16 4 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 5 H -0.28 -5.03 7.11 56.52 0.40 -4.63 16 6 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 7 C -0.44 -10.69 9.05 -37.75 -0.34 -11.03 16 8 H 0.08 1.91 7.87 -52.49 -0.41 1.50 16 9 C 0.13 3.18 5.55 -106.80 -0.59 2.59 16 10 C -0.17 -4.32 8.59 -39.27 -0.34 -4.66 16 11 C -0.04 -0.83 9.52 -39.61 -0.38 -1.21 16 12 C -0.28 -6.13 5.89 -104.73 -0.62 -6.75 16 13 C 0.56 11.61 7.72 -12.45 -0.10 11.51 16 14 O -0.50 -11.94 14.58 5.28 0.08 -11.87 16 15 N -0.66 -10.73 5.33 -12.35 -0.07 -10.80 16 16 C 0.37 5.69 7.42 -154.73 -1.15 4.54 16 17 C -0.19 -2.14 9.94 -39.24 -0.39 -2.53 16 18 C -0.08 -0.80 10.15 -39.25 -0.40 -1.20 16 19 C -0.01 -0.08 7.34 -39.27 -0.29 -0.37 16 20 F -0.14 -1.63 17.28 2.25 0.04 -1.59 16 21 C 0.11 1.57 11.16 -17.48 -0.20 1.38 16 22 N -0.45 -7.82 7.88 -12.31 -0.10 -7.91 16 23 C -0.05 -1.06 9.47 -39.60 -0.37 -1.44 16 24 C -0.23 -5.03 9.73 -39.27 -0.38 -5.41 16 25 H 0.29 6.28 8.29 -40.82 -0.34 5.94 16 26 H 0.12 3.16 6.25 -52.49 -0.33 2.83 16 27 H 0.10 2.41 7.63 -52.49 -0.40 2.01 16 28 H 0.42 5.29 6.72 -40.82 -0.27 5.02 16 29 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 30 H 0.15 1.05 8.06 -52.49 -0.42 0.63 16 31 H 0.17 1.91 8.06 -52.49 -0.42 1.49 16 32 H 0.09 1.39 6.38 -52.49 -0.34 1.05 16 33 H 0.10 1.99 8.06 -52.49 -0.42 1.57 16 LS Contribution 298.99 15.07 4.51 4.51 Total: -1.00 -29.26 298.99 -8.17 -37.43 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -2.58 Total: 9.25 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: -5.63 Total: -13.03 kcal Atomic # 7 Polarization: -37.21 SS G_CDS: 0.44 Total: -36.77 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: 0.08 Total: -11.87 kcal Atomic # 9 Polarization: -1.63 SS G_CDS: 0.04 Total: -1.59 kcal Atomic # 14 Polarization: 17.09 SS G_CDS: -5.03 Total: 12.06 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -29.26 -8.17 -37.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336612033.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.676 kcal (2) G-P(sol) polarization free energy of solvation -29.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds