Wall clock time and date at job start Tue Mar 31 2020 05:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30635 * 1 3 3 Si 1.86797 * 120.00405 * 2 1 4 4 H 1.48502 * 109.47049 * 239.99935 * 3 2 1 5 5 H 1.48500 * 109.47149 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47401 * 119.99658 * 3 2 1 7 7 C 1.40238 * 119.99852 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00224 * 189.91538 * 7 2 1 9 9 C 1.41092 * 119.99854 * 9.91821 * 7 2 1 10 10 C 1.40908 * 120.09831 * 29.72587 * 9 7 2 11 11 C 1.36307 * 119.88599 * 180.27931 * 10 9 7 12 12 C 1.40031 * 120.10773 * 359.45203 * 11 10 9 13 13 C 1.47590 * 119.89963 * 180.27637 * 12 11 10 14 14 O 1.21598 * 119.99662 * 0.02562 * 13 12 11 15 15 N 1.34773 * 120.00393 * 180.02562 * 13 12 11 16 16 C 1.39379 * 120.00017 * 185.04604 * 15 13 12 17 17 C 1.39059 * 119.66884 * 174.68075 * 16 15 13 18 18 C 1.38348 * 119.12429 * 179.75167 * 17 16 15 19 19 C 1.39021 * 118.47561 * 0.51019 * 18 17 16 20 20 F 1.35106 * 120.36892 * 179.75280 * 19 18 17 21 21 C 1.38293 * 119.26856 * 359.73279 * 19 18 17 22 22 N 1.31944 * 120.81301 * 0.02562 * 21 19 18 23 23 C 1.40041 * 120.20817 * 0.30469 * 12 11 10 24 24 C 1.36302 * 120.10391 * 359.97072 * 23 12 11 25 25 H 0.97003 * 119.99887 * 359.97438 * 1 2 3 26 26 H 1.07994 * 120.05886 * 0.02562 * 10 9 7 27 27 H 1.08001 * 119.93928 * 179.73748 * 11 10 9 28 28 H 0.97006 * 120.00050 * 5.04311 * 15 13 12 29 29 H 1.08000 * 120.44014 * 359.97438 * 17 16 15 30 30 H 1.07995 * 120.76694 * 180.21511 * 18 17 16 31 31 H 1.07998 * 119.59334 * 180.02562 * 21 19 18 32 32 H 1.08001 * 119.94903 * 179.97438 * 23 12 11 33 33 H 1.08002 * 120.05672 * 180.02562 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6176 0.0000 4 1 3.0942 1.6962 -1.2125 5 1 1.2755 2.7464 -0.0006 6 1 3.0942 1.6964 1.2125 7 6 2.0075 -1.2145 0.0005 8 1 3.0754 -1.2215 0.1616 9 6 1.3178 -2.4273 -0.2094 10 6 0.1526 -2.4497 -1.0014 11 6 -0.5135 -3.6227 -1.1967 12 6 -0.0352 -4.8063 -0.6211 13 6 -0.7567 -6.0750 -0.8406 14 8 -1.7646 -6.0914 -1.5207 15 7 -0.2986 -7.2153 -0.2873 16 6 -0.9177 -8.4294 -0.5792 17 6 -0.3735 -9.6137 -0.0944 18 6 -1.0002 -10.8120 -0.3867 19 6 -2.1503 -10.7854 -1.1672 20 9 -2.7902 -11.9334 -1.4800 21 6 -2.6324 -9.5707 -1.6196 22 7 -2.0145 -8.4442 -1.3196 23 6 1.1252 -4.7899 0.1625 24 6 1.7949 -3.6207 0.3680 25 1 -0.4850 0.8401 0.0004 26 1 -0.2144 -1.5382 -1.4496 27 1 -1.4091 -3.6401 -1.8001 28 1 0.4622 -7.1911 0.3142 29 1 0.5245 -9.5980 0.5053 30 1 -0.6024 -11.7471 -0.0210 31 1 -3.5257 -9.5439 -2.2260 32 1 1.4902 -5.7052 0.6048 33 1 2.6901 -3.6090 0.9722 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336612033.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:25 Heat of formation + Delta-G solvation = -32.081728 kcal Electronic energy + Delta-G solvation = -20541.646194 eV Core-core repulsion = 17060.147284 eV Total energy + Delta-G solvation = -3481.498909 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.086 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.87382 -41.78589 -40.22108 -38.82111 -35.89251 -35.62360 -33.49556 -32.14373 -31.53772 -30.40237 -27.75448 -25.39457 -24.52839 -23.45284 -22.65049 -21.40186 -19.57633 -19.24130 -18.58736 -18.35067 -17.53665 -16.97555 -16.82371 -16.16647 -16.01224 -15.74419 -15.39835 -15.05797 -14.80584 -14.49214 -14.44296 -14.30461 -14.01347 -13.61717 -13.53888 -13.26155 -12.82613 -12.64613 -12.36521 -11.78492 -11.67998 -11.37601 -11.17568 -11.10727 -10.96559 -10.13480 -9.58304 -9.45876 -9.14991 -8.73400 -6.50953 -0.16772 0.15531 0.47629 1.14408 1.39458 1.44806 1.52568 1.93091 2.06793 2.17487 2.65617 2.87869 3.10056 3.38745 3.67500 3.78852 3.87941 4.01479 4.27083 4.32214 4.40086 4.59994 4.80863 4.89095 4.98207 5.01768 5.19222 5.23284 5.29169 5.58653 5.72025 5.75063 5.90642 6.00781 6.19814 6.29414 6.56517 6.77065 6.87867 6.98128 7.40161 8.20479 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.059124 B = 0.002905 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 473.463790 B = 9637.311659 C =10043.587524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.030 3.970 3 Si 0.991 3.009 4 H -0.258 1.258 5 H -0.271 1.271 6 H -0.253 1.253 7 C -0.473 4.473 8 H 0.094 0.906 9 C 0.102 3.898 10 C -0.195 4.195 11 C -0.051 4.051 12 C -0.287 4.287 13 C 0.561 3.439 14 O -0.543 6.543 15 N -0.650 5.650 16 C 0.334 3.666 17 C -0.165 4.165 18 C -0.067 4.067 19 C 0.003 3.997 20 F -0.135 7.135 21 C 0.092 3.908 22 N -0.502 5.502 23 C -0.039 4.039 24 C -0.238 4.238 25 H 0.293 0.707 26 H 0.104 0.896 27 H 0.090 0.910 28 H 0.432 0.568 29 H 0.188 0.812 30 H 0.189 0.811 31 H 0.173 0.827 32 H 0.143 0.857 33 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.251 -15.127 2.865 15.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.188 4.188 3 Si 0.811 3.189 4 H -0.182 1.182 5 H -0.195 1.195 6 H -0.177 1.177 7 C -0.501 4.501 8 H 0.112 0.888 9 C 0.099 3.901 10 C -0.215 4.215 11 C -0.070 4.070 12 C -0.291 4.291 13 C 0.355 3.645 14 O -0.420 6.420 15 N -0.298 5.298 16 C 0.103 3.897 17 C -0.188 4.188 18 C -0.094 4.094 19 C -0.020 4.020 20 F -0.114 7.114 21 C -0.067 4.067 22 N -0.216 5.216 23 C -0.057 4.057 24 C -0.257 4.257 25 H 0.104 0.896 26 H 0.122 0.878 27 H 0.108 0.892 28 H 0.273 0.727 29 H 0.205 0.795 30 H 0.206 0.794 31 H 0.190 0.810 32 H 0.160 0.840 33 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 2.022 -14.116 2.084 14.412 hybrid contribution 0.239 0.170 0.235 0.376 sum 2.261 -13.946 2.320 14.317 Atomic orbital electron populations 1.69777 1.09394 1.31344 1.33240 1.27011 0.95581 1.05156 0.91004 0.85103 0.78610 0.74794 0.80424 1.18193 1.19539 1.17721 1.20139 0.96721 0.91187 1.42004 0.88839 1.18197 0.91136 0.93780 0.87024 1.20983 1.00281 0.96392 1.03820 1.20557 0.97203 0.92560 0.96720 1.19096 1.02968 0.91845 1.15231 1.18702 0.83593 0.83886 0.78310 1.90752 1.25666 1.86201 1.39336 1.43458 1.34343 1.03845 1.48109 1.19035 0.90392 0.86908 0.93385 1.21776 1.03758 0.88892 1.04389 1.21796 0.92215 1.00732 0.94619 1.18772 0.96422 0.82665 1.04111 1.91496 1.81061 1.47183 1.91671 1.22983 0.99865 0.85698 0.98133 1.67695 1.09012 1.29969 1.14951 1.20756 0.92432 0.98016 0.94528 1.21026 1.04295 0.93137 1.07259 0.89583 0.87816 0.89168 0.72662 0.79521 0.79373 0.81025 0.83984 0.86059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.64 10.85 21.87 0.24 -40.40 16 2 C 0.03 1.39 5.26 85.36 0.45 1.84 16 3 Si 0.99 35.08 29.57 68.60 2.03 37.11 16 4 H -0.26 -8.91 7.11 99.48 0.71 -8.20 16 5 H -0.27 -9.27 7.11 99.48 0.71 -8.57 16 6 H -0.25 -8.53 7.11 99.48 0.71 -7.82 16 7 C -0.47 -23.21 9.05 23.46 0.21 -23.00 16 8 H 0.09 4.24 7.87 -2.91 -0.02 4.22 16 9 C 0.10 5.12 5.55 -21.27 -0.12 5.00 16 10 C -0.20 -10.22 8.59 22.47 0.19 -10.03 16 11 C -0.05 -2.54 9.52 22.25 0.21 -2.33 16 12 C -0.29 -12.59 5.89 -19.94 -0.12 -12.70 16 13 C 0.56 23.33 7.72 86.71 0.67 24.00 16 14 O -0.54 -26.73 14.58 -4.03 -0.06 -26.79 16 15 N -0.65 -19.70 5.33 -311.24 -1.66 -21.36 16 16 C 0.33 9.61 7.42 132.93 0.99 10.60 16 17 C -0.17 -2.93 9.94 22.49 0.22 -2.70 16 18 C -0.07 -1.07 10.15 22.48 0.23 -0.84 16 19 C 0.00 0.07 7.34 22.47 0.16 0.24 16 20 F -0.14 -2.83 17.28 44.97 0.78 -2.05 16 21 C 0.09 2.50 11.16 84.69 0.95 3.44 16 22 N -0.50 -17.31 7.88 -192.87 -1.52 -18.83 16 23 C -0.04 -1.47 9.47 22.26 0.21 -1.26 16 24 C -0.24 -10.21 9.73 22.47 0.22 -9.99 16 25 H 0.29 13.28 8.29 -92.71 -0.77 12.51 16 26 H 0.10 5.71 6.25 -2.91 -0.02 5.69 16 27 H 0.09 4.58 7.63 -2.91 -0.02 4.56 16 28 H 0.43 9.37 6.72 -92.70 -0.62 8.75 16 29 H 0.19 1.68 8.06 -2.91 -0.02 1.65 16 30 H 0.19 1.46 8.06 -2.91 -0.02 1.44 16 31 H 0.17 4.07 8.06 -2.91 -0.02 4.04 16 32 H 0.14 3.78 6.38 -2.91 -0.02 3.76 16 33 H 0.12 4.59 8.06 -2.91 -0.02 4.57 16 Total: -1.00 -68.29 298.99 4.84 -63.45 By element: Atomic # 1 Polarization: 26.05 SS G_CDS: 0.55 Total: 26.60 kcal Atomic # 6 Polarization: -22.21 SS G_CDS: 4.48 Total: -17.73 kcal Atomic # 7 Polarization: -77.65 SS G_CDS: -2.94 Total: -80.59 kcal Atomic # 8 Polarization: -26.73 SS G_CDS: -0.06 Total: -26.79 kcal Atomic # 9 Polarization: -2.83 SS G_CDS: 0.78 Total: -2.05 kcal Atomic # 14 Polarization: 35.08 SS G_CDS: 2.03 Total: 37.11 kcal Total: -68.29 4.84 -63.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336612033.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.371 kcal (2) G-P(sol) polarization free energy of solvation -68.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds