Wall clock time and date at job start Tue Mar 31 2020 05:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99649 * 2 1 4 4 H 1.48496 * 109.47292 * 269.99599 * 3 2 1 5 5 H 1.48494 * 109.47512 * 30.00022 * 3 2 1 6 6 H 1.48505 * 109.46863 * 149.99982 * 3 2 1 7 7 C 1.37874 * 120.00098 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00013 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99865 * 180.02562 * 7 2 1 10 10 N 1.46500 * 109.46798 * 179.97438 * 9 7 2 11 11 C 1.34773 * 119.99537 * 179.97438 * 10 9 7 12 12 O 1.21588 * 120.00433 * 0.02562 * 11 10 9 13 13 N 1.34781 * 120.00056 * 180.02562 * 11 10 9 14 14 C 1.40142 * 120.00296 * 185.31901 * 13 11 10 15 15 C 1.38834 * 120.01376 * 33.27307 * 14 13 11 16 16 C 1.38098 * 119.98799 * 180.02562 * 15 14 13 17 17 C 1.38725 * 120.01206 * 359.97438 * 16 15 14 18 18 O 1.35970 * 119.98732 * 179.97438 * 17 16 15 19 19 C 1.42897 * 117.00118 * 180.02562 * 18 17 16 20 20 F 1.39900 * 109.47294 * 300.00153 * 19 18 17 21 21 F 1.39895 * 109.47312 * 60.00184 * 19 18 17 22 22 C 1.38715 * 120.02650 * 0.25681 * 17 16 15 23 23 C 1.38104 * 120.01497 * 359.48805 * 22 17 16 24 24 H 0.97004 * 120.00245 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47190 * 59.99557 * 9 7 2 26 26 H 1.09000 * 109.46503 * 299.99687 * 9 7 2 27 27 H 0.97002 * 120.00406 * 359.97438 * 10 9 7 28 28 H 0.97003 * 119.99595 * 5.31657 * 13 11 10 29 29 H 1.07996 * 120.01018 * 359.97438 * 15 14 13 30 30 H 1.07995 * 119.99987 * 179.97438 * 16 15 14 31 31 H 1.09010 * 109.47010 * 180.02562 * 19 18 17 32 32 H 1.08001 * 119.99015 * 179.73957 * 22 17 16 33 33 H 1.07994 * 120.00297 * 180.23184 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 0.0000 10 7 3.9999 -2.5752 -0.0001 11 6 5.3250 -2.8214 -0.0001 12 8 6.1151 -1.8972 0.0004 13 7 5.7743 -4.0921 -0.0008 14 6 7.1472 -4.3499 0.1117 15 6 7.9515 -3.5110 0.8712 16 6 9.3044 -3.7653 0.9812 17 6 9.8597 -4.8590 0.3334 18 8 11.1919 -5.1086 0.4416 19 6 11.6963 -6.2516 -0.2521 20 9 11.0585 -7.4033 0.2209 21 9 11.4503 -6.1116 -1.6222 22 6 9.0575 -5.6949 -0.4295 23 6 7.7035 -5.4447 -0.5360 24 1 -0.4851 0.8401 -0.0004 25 1 3.8746 -0.6806 0.8905 26 1 3.8751 -0.6795 -0.8895 27 1 3.3696 -3.3125 -0.0001 28 1 5.1474 -4.8281 -0.0790 29 1 7.5194 -2.6592 1.3752 30 1 9.9302 -3.1126 1.5716 31 1 12.7698 -6.3353 -0.0821 32 1 9.4913 -6.5438 -0.9370 33 1 7.0785 -6.0977 -1.1270 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340056124.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:13 Heat of formation + Delta-G solvation = -143.127272 kcal Electronic energy + Delta-G solvation = -21579.409605 eV Core-core repulsion = 17662.326175 eV Total energy + Delta-G solvation = -3917.083430 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.092 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.64813 -47.63847 -40.51112 -39.45746 -37.48584 -34.50471 -34.13763 -32.38338 -31.12004 -29.37752 -27.65301 -26.12912 -23.26021 -22.89901 -21.70553 -20.47878 -19.22555 -18.72760 -18.20275 -18.05928 -17.49571 -16.40474 -16.24665 -15.34033 -14.88535 -14.82496 -14.64976 -14.24189 -14.18631 -14.12094 -13.95274 -13.67512 -13.26720 -13.21267 -13.06922 -12.58807 -12.41148 -12.17212 -12.04266 -11.16397 -11.02842 -10.80815 -10.02120 -10.00348 -9.70163 -9.51742 -9.05770 -8.81962 -8.31023 -7.73980 -6.24350 -4.27142 1.23195 1.26827 2.33010 3.00692 3.17271 3.25757 3.33153 3.40196 3.42191 3.84196 3.98236 4.30991 4.33242 4.64719 4.73285 4.76439 5.11119 5.13633 5.26162 5.51917 5.71978 5.88958 6.09181 6.27619 6.45658 6.66016 6.69447 7.03474 7.06243 7.13181 7.26521 7.43617 8.20246 8.53363 8.73785 8.99606 9.35352 10.87476 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.047901 B = 0.002869 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.399237 B = 9758.798885 C =10055.053899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.078 3.922 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.545 4.545 8 H 0.080 0.920 9 C 0.237 3.763 10 N -0.714 5.714 11 C 0.692 3.308 12 O -0.585 6.585 13 N -0.693 5.693 14 C 0.162 3.838 15 C -0.089 4.089 16 C -0.110 4.110 17 C 0.073 3.927 18 O -0.322 6.322 19 C 0.411 3.589 20 F -0.201 7.201 21 F -0.200 7.200 22 C -0.168 4.168 23 C -0.119 4.119 24 H 0.268 0.732 25 H 0.026 0.974 26 H 0.021 0.979 27 H 0.395 0.605 28 H 0.405 0.595 29 H 0.149 0.851 30 H 0.135 0.865 31 H 0.179 0.821 32 H 0.133 0.867 33 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.792 -14.756 0.535 26.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.184 1.184 7 C -0.583 4.583 8 H 0.098 0.902 9 C 0.115 3.885 10 N -0.366 5.366 11 C 0.393 3.607 12 O -0.464 6.464 13 N -0.341 5.341 14 C 0.066 3.934 15 C -0.110 4.110 16 C -0.130 4.130 17 C 0.030 3.970 18 O -0.239 6.239 19 C 0.321 3.679 20 F -0.183 7.183 21 F -0.182 7.182 22 C -0.187 4.187 23 C -0.140 4.140 24 H 0.078 0.922 25 H 0.044 0.956 26 H 0.039 0.961 27 H 0.228 0.772 28 H 0.241 0.759 29 H 0.167 0.833 30 H 0.153 0.847 31 H 0.195 0.805 32 H 0.151 0.849 33 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 22.320 -13.611 0.627 26.150 hybrid contribution -0.480 -0.127 -0.377 0.623 sum 21.840 -13.737 0.250 25.802 Atomic orbital electron populations 1.69875 1.06226 1.27505 1.49273 1.24777 0.94795 0.99183 0.93810 0.86811 0.80583 0.83160 0.79106 1.19812 1.20878 1.18412 1.21064 0.88409 0.95270 1.53544 0.90230 1.19437 0.95014 0.77167 0.96908 1.45453 1.03361 1.11508 1.76293 1.16122 0.83920 0.82247 0.78455 1.90888 1.55012 1.42740 1.57714 1.42784 1.05710 1.07868 1.77754 1.17520 0.83387 0.96057 0.96483 1.21133 0.92273 1.00130 0.97418 1.20313 0.94777 0.96258 1.01607 1.18768 0.81135 0.97096 1.00035 1.86602 1.23345 1.44957 1.69046 1.23316 0.96618 0.74595 0.73403 1.93093 1.85235 1.51901 1.88029 1.93099 1.95882 1.95102 1.34085 1.21213 0.94382 1.01015 1.02102 1.20637 0.94407 0.98881 1.00058 0.92194 0.95614 0.96097 0.77155 0.75936 0.83328 0.84664 0.80480 0.84921 0.85140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.22 13.96 55.43 0.77 -25.44 16 2 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 3 Si 0.88 21.20 27.47 -169.99 -4.67 16.53 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 6 H -0.26 -6.23 6.54 56.52 0.37 -5.86 16 7 C -0.54 -14.71 9.83 -34.44 -0.34 -15.05 16 8 H 0.08 2.23 7.84 -52.49 -0.41 1.82 16 9 C 0.24 5.73 4.50 -5.19 -0.02 5.71 16 10 N -0.71 -14.14 5.55 -66.41 -0.37 -14.51 16 11 C 0.69 13.19 8.30 -86.92 -0.72 12.47 16 12 O -0.59 -13.20 14.03 5.29 0.07 -13.13 16 13 N -0.69 -10.01 5.36 -14.19 -0.08 -10.09 16 14 C 0.16 2.32 6.28 -83.62 -0.53 1.79 16 15 C -0.09 -1.33 8.65 -39.41 -0.34 -1.67 16 16 C -0.11 -1.43 9.98 -39.45 -0.39 -1.83 16 17 C 0.07 0.90 6.48 -39.23 -0.25 0.65 16 18 O -0.32 -3.31 10.43 -19.65 -0.20 -3.51 16 19 C 0.41 2.94 5.98 101.05 0.60 3.54 16 20 F -0.20 -1.72 15.59 2.25 0.04 -1.69 16 21 F -0.20 -1.81 15.56 2.25 0.04 -1.77 16 22 C -0.17 -2.01 8.25 -39.45 -0.33 -2.33 16 23 C -0.12 -1.44 9.96 -39.41 -0.39 -1.83 16 24 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 25 H 0.03 0.66 7.20 -51.93 -0.37 0.28 16 26 H 0.02 0.53 7.57 -51.93 -0.39 0.14 16 27 H 0.39 6.75 8.34 -40.82 -0.34 6.41 16 28 H 0.41 4.43 8.83 -40.82 -0.36 4.06 16 29 H 0.15 2.47 6.41 -52.49 -0.34 2.14 16 30 H 0.14 1.50 8.06 -52.49 -0.42 1.07 16 31 H 0.18 0.35 8.14 -51.92 -0.42 -0.07 16 32 H 0.13 1.42 5.09 -52.49 -0.27 1.16 16 33 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 296.23 15.07 4.46 4.46 Total: -1.00 -33.33 296.23 -5.66 -38.99 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -2.92 Total: 6.60 kcal Atomic # 6 Polarization: 6.35 SS G_CDS: -2.81 Total: 3.54 kcal Atomic # 7 Polarization: -50.36 SS G_CDS: 0.33 Total: -50.04 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: -0.13 Total: -16.64 kcal Atomic # 9 Polarization: -3.53 SS G_CDS: 0.07 Total: -3.46 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.67 Total: 16.53 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -33.33 -5.66 -38.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340056124.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.134 kcal (2) G-P(sol) polarization free energy of solvation -33.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds