Wall clock time and date at job start Tue Mar 31 2020 05:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99649 * 2 1 4 4 H 1.48496 * 109.47292 * 269.99599 * 3 2 1 5 5 H 1.48494 * 109.47512 * 30.00022 * 3 2 1 6 6 H 1.48505 * 109.46863 * 149.99982 * 3 2 1 7 7 C 1.37874 * 120.00098 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00013 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99865 * 180.02562 * 7 2 1 10 10 N 1.46500 * 109.46798 * 179.97438 * 9 7 2 11 11 C 1.34773 * 119.99537 * 179.97438 * 10 9 7 12 12 O 1.21588 * 120.00433 * 0.02562 * 11 10 9 13 13 N 1.34781 * 120.00056 * 180.02562 * 11 10 9 14 14 C 1.40142 * 120.00296 * 185.31901 * 13 11 10 15 15 C 1.38834 * 120.01376 * 33.27307 * 14 13 11 16 16 C 1.38098 * 119.98799 * 180.02562 * 15 14 13 17 17 C 1.38725 * 120.01206 * 359.97438 * 16 15 14 18 18 O 1.35970 * 119.98732 * 179.97438 * 17 16 15 19 19 C 1.42897 * 117.00118 * 180.02562 * 18 17 16 20 20 F 1.39900 * 109.47294 * 300.00153 * 19 18 17 21 21 F 1.39895 * 109.47312 * 60.00184 * 19 18 17 22 22 C 1.38715 * 120.02650 * 0.25681 * 17 16 15 23 23 C 1.38104 * 120.01497 * 359.48805 * 22 17 16 24 24 H 0.97004 * 120.00245 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47190 * 59.99557 * 9 7 2 26 26 H 1.09000 * 109.46503 * 299.99687 * 9 7 2 27 27 H 0.97002 * 120.00406 * 359.97438 * 10 9 7 28 28 H 0.97003 * 119.99595 * 5.31657 * 13 11 10 29 29 H 1.07996 * 120.01018 * 359.97438 * 15 14 13 30 30 H 1.07995 * 119.99987 * 179.97438 * 16 15 14 31 31 H 1.09010 * 109.47010 * 180.02562 * 19 18 17 32 32 H 1.08001 * 119.99015 * 179.73957 * 22 17 16 33 33 H 1.07994 * 120.00297 * 180.23184 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 0.0000 10 7 3.9999 -2.5752 -0.0001 11 6 5.3250 -2.8214 -0.0001 12 8 6.1151 -1.8972 0.0004 13 7 5.7743 -4.0921 -0.0008 14 6 7.1472 -4.3499 0.1117 15 6 7.9515 -3.5110 0.8712 16 6 9.3044 -3.7653 0.9812 17 6 9.8597 -4.8590 0.3334 18 8 11.1919 -5.1086 0.4416 19 6 11.6963 -6.2516 -0.2521 20 9 11.0585 -7.4033 0.2209 21 9 11.4503 -6.1116 -1.6222 22 6 9.0575 -5.6949 -0.4295 23 6 7.7035 -5.4447 -0.5360 24 1 -0.4851 0.8401 -0.0004 25 1 3.8746 -0.6806 0.8905 26 1 3.8751 -0.6795 -0.8895 27 1 3.3696 -3.3125 -0.0001 28 1 5.1474 -4.8281 -0.0790 29 1 7.5194 -2.6592 1.3752 30 1 9.9302 -3.1126 1.5716 31 1 12.7698 -6.3353 -0.0821 32 1 9.4913 -6.5438 -0.9370 33 1 7.0785 -6.0977 -1.1270 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340056124.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:13 Heat of formation + Delta-G solvation = -167.697482 kcal Electronic energy + Delta-G solvation = -21580.475049 eV Core-core repulsion = 17662.326175 eV Total energy + Delta-G solvation = -3918.148874 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.092 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.26386 -48.26168 -41.72483 -40.57587 -38.54978 -36.22903 -35.47240 -34.38381 -32.12018 -30.71652 -29.25115 -26.89614 -24.57877 -24.15116 -23.09997 -21.93578 -20.17025 -19.95886 -19.03001 -18.83075 -18.75427 -18.21414 -17.06571 -16.76885 -16.59319 -16.08690 -15.63712 -15.55760 -15.14338 -15.02818 -14.89669 -14.61039 -14.59609 -14.42628 -14.33595 -14.10189 -13.90653 -13.26664 -13.03215 -12.88770 -12.70281 -12.12798 -11.92367 -11.66256 -11.39325 -11.07495 -10.91591 -10.07940 -10.01659 -8.85037 -8.39514 -6.46694 0.19632 0.25969 1.34612 1.36672 1.49422 1.60425 1.73047 2.02962 2.29175 2.60465 2.71121 2.96381 3.31853 3.54491 3.74977 3.80057 3.81104 4.14914 4.29816 4.49449 4.64909 4.77217 4.92198 5.04094 5.12763 5.20600 5.28828 5.36808 5.47794 5.65143 5.92815 6.06524 6.22392 6.55396 7.06174 7.19395 7.51599 8.75122 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.047901 B = 0.002869 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.399237 B = 9758.798885 C =10055.053899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.027 3.973 3 Si 0.937 3.063 4 H -0.266 1.266 5 H -0.274 1.274 6 H -0.258 1.258 7 C -0.546 4.546 8 H 0.060 0.940 9 C 0.250 3.750 10 N -0.713 5.713 11 C 0.695 3.305 12 O -0.622 6.622 13 N -0.673 5.673 14 C 0.136 3.864 15 C -0.106 4.106 16 C -0.118 4.118 17 C 0.076 3.924 18 O -0.327 6.327 19 C 0.405 3.595 20 F -0.209 7.209 21 F -0.211 7.211 22 C -0.171 4.171 23 C -0.106 4.106 24 H 0.273 0.727 25 H 0.015 0.985 26 H 0.012 0.988 27 H 0.408 0.592 28 H 0.423 0.577 29 H 0.125 0.875 30 H 0.148 0.852 31 H 0.235 0.765 32 H 0.148 0.852 33 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.886 -15.883 0.133 28.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.173 4.173 3 Si 0.761 3.239 4 H -0.191 1.191 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.584 4.584 8 H 0.079 0.921 9 C 0.126 3.874 10 N -0.366 5.366 11 C 0.395 3.605 12 O -0.503 6.503 13 N -0.322 5.322 14 C 0.040 3.960 15 C -0.127 4.127 16 C -0.137 4.137 17 C 0.033 3.967 18 O -0.245 6.245 19 C 0.316 3.684 20 F -0.191 7.191 21 F -0.193 7.193 22 C -0.190 4.190 23 C -0.127 4.127 24 H 0.082 0.918 25 H 0.033 0.967 26 H 0.030 0.970 27 H 0.244 0.756 28 H 0.262 0.738 29 H 0.142 0.858 30 H 0.166 0.834 31 H 0.251 0.749 32 H 0.166 0.834 33 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 24.428 -14.817 0.223 28.571 hybrid contribution -1.019 0.067 -0.252 1.052 sum 23.409 -14.750 -0.028 27.668 Atomic orbital electron populations 1.69976 1.07707 1.28648 1.50670 1.25573 0.95522 1.02654 0.93576 0.85861 0.79324 0.79287 0.79449 1.19055 1.19906 1.18251 1.21263 0.89831 0.94639 1.52688 0.92148 1.19017 0.93095 0.79375 0.95883 1.45122 1.04203 1.10369 1.76943 1.16152 0.83085 0.83294 0.77965 1.90865 1.55746 1.44445 1.59206 1.42432 1.06435 1.06654 1.76703 1.17697 0.82985 0.97296 0.97973 1.21042 0.93406 0.99935 0.98280 1.20415 0.94243 0.97025 1.02062 1.18881 0.82319 0.96493 0.99043 1.86614 1.21942 1.46447 1.69502 1.24281 0.98635 0.73150 0.72365 1.93076 1.85676 1.52266 1.88063 1.93077 1.96051 1.95074 1.35083 1.21463 0.94335 1.01324 1.01926 1.20886 0.94812 0.97953 0.99049 0.91821 0.96712 0.96971 0.75634 0.73800 0.85758 0.83392 0.74924 0.83444 0.82380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.25 13.96 21.45 0.30 -54.96 16 2 C 0.03 1.52 5.47 84.65 0.46 1.98 16 3 Si 0.94 43.72 27.47 68.60 1.88 45.60 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 5 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 6 H -0.26 -11.91 6.54 99.48 0.65 -11.26 16 7 C -0.55 -29.76 9.83 25.60 0.25 -29.51 16 8 H 0.06 3.44 7.84 -2.91 -0.02 3.42 16 9 C 0.25 12.13 4.50 85.64 0.38 12.52 16 10 N -0.71 -28.10 5.55 -482.29 -2.68 -30.78 16 11 C 0.69 26.33 8.30 179.05 1.49 27.82 16 12 O -0.62 -28.34 14.03 -3.99 -0.06 -28.39 16 13 N -0.67 -18.77 5.36 -317.07 -1.70 -20.47 16 14 C 0.14 3.75 6.28 38.10 0.24 3.99 16 15 C -0.11 -3.18 8.65 22.38 0.19 -2.98 16 16 C -0.12 -3.00 9.98 22.35 0.22 -2.78 16 17 C 0.08 1.76 6.48 22.50 0.15 1.90 16 18 O -0.33 -5.91 10.43 -93.22 -0.97 -6.88 16 19 C 0.40 4.48 5.98 113.37 0.68 5.16 16 20 F -0.21 -3.00 15.59 44.97 0.70 -2.30 16 21 F -0.21 -3.24 15.56 44.97 0.70 -2.54 16 22 C -0.17 -3.70 8.25 22.35 0.18 -3.52 16 23 C -0.11 -2.34 9.96 22.38 0.22 -2.12 16 24 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 25 H 0.01 0.76 7.20 -2.39 -0.02 0.74 16 26 H 0.01 0.62 7.57 -2.39 -0.02 0.60 16 27 H 0.41 13.76 8.34 -92.71 -0.77 12.99 16 28 H 0.42 8.51 8.83 -92.71 -0.82 7.69 16 29 H 0.12 4.31 6.41 -2.91 -0.02 4.30 16 30 H 0.15 3.20 8.06 -2.91 -0.02 3.18 16 31 H 0.24 -0.12 8.14 -2.38 -0.02 -0.14 16 32 H 0.15 2.74 5.09 -2.91 -0.01 2.72 16 33 H 0.16 2.53 8.06 -2.91 -0.02 2.51 16 Total: -1.00 -72.29 296.23 2.20 -70.09 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: -0.46 Total: 18.16 kcal Atomic # 6 Polarization: 7.99 SS G_CDS: 4.47 Total: 12.47 kcal Atomic # 7 Polarization: -102.13 SS G_CDS: -4.08 Total: -106.21 kcal Atomic # 8 Polarization: -34.25 SS G_CDS: -1.03 Total: -35.28 kcal Atomic # 9 Polarization: -6.24 SS G_CDS: 1.40 Total: -4.84 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 1.88 Total: 45.60 kcal Total: -72.29 2.20 -70.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340056124.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.607 kcal (2) G-P(sol) polarization free energy of solvation -72.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds