Wall clock time and date at job start Tue Mar 31 2020 06:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.47404 * 2 1 4 4 C 1.36940 * 119.99923 * 275.94461 * 3 2 1 5 5 H 1.07998 * 120.00140 * 35.09676 * 4 3 2 6 6 C 1.38811 * 119.99663 * 215.09964 * 4 3 2 7 7 N 1.31615 * 120.00114 * 22.00773 * 6 4 3 8 8 Si 1.86800 * 119.99767 * 202.00389 * 6 4 3 9 9 H 1.48498 * 109.47250 * 0.02562 * 8 6 4 10 10 H 1.48507 * 109.46742 * 120.00394 * 8 6 4 11 11 H 1.48501 * 109.47255 * 240.00176 * 8 6 4 12 12 C 1.46495 * 120.00119 * 95.93772 * 3 2 1 13 13 C 1.50701 * 109.47514 * 270.00117 * 12 3 2 14 14 C 1.38419 * 120.02718 * 270.02065 * 13 12 3 15 15 F 1.35095 * 120.01129 * 359.97438 * 14 13 12 16 16 C 1.38469 * 119.97400 * 179.97438 * 14 13 12 17 17 C 1.38210 * 120.02646 * 0.02562 * 16 14 13 18 18 N 1.48019 * 119.97243 * 179.97438 * 17 16 14 19 19 O 1.21803 * 120.00264 * 359.97438 * 18 17 16 20 20 O 1.21803 * 119.99544 * 180.02562 * 18 17 16 21 21 C 1.38200 * 120.05173 * 359.97438 * 17 16 14 22 22 C 1.38420 * 120.02328 * 89.99852 * 13 12 3 23 23 F 1.35102 * 120.01284 * 0.02562 * 22 13 12 24 24 H 1.09008 * 109.46738 * 60.00134 * 1 2 3 25 25 H 1.09000 * 109.47198 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47143 * 300.00590 * 1 2 3 27 27 H 1.09000 * 109.46773 * 239.99556 * 2 1 3 28 28 H 1.09001 * 109.46634 * 120.00207 * 2 1 3 29 29 H 0.97001 * 120.00103 * 179.97438 * 7 6 4 30 30 H 1.08999 * 109.47441 * 150.00105 * 12 3 2 31 31 H 1.09000 * 109.47388 * 30.00404 * 12 3 2 32 32 H 1.08004 * 119.98524 * 180.27482 * 16 14 13 33 33 H 1.07998 * 119.98981 * 179.97438 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1309 2.0676 -1.1796 5 1 1.4127 1.9051 -1.9696 6 6 3.1681 2.9724 -1.3598 7 7 4.2602 2.8751 -0.6318 8 14 3.0138 4.3279 -2.6358 9 1 1.6980 4.2204 -3.3157 10 1 3.1189 5.6503 -1.9682 11 1 4.1016 4.1912 -3.6374 12 6 2.3864 2.0280 1.2619 13 6 1.1802 2.7210 1.8416 14 6 0.9131 4.0385 1.5118 15 9 1.7340 4.7041 0.6702 16 6 -0.1957 4.6739 2.0447 17 6 -1.0354 3.9934 2.9061 18 7 -2.2200 4.6740 3.4756 19 8 -2.4543 5.8335 3.1853 20 8 -2.9600 4.0748 4.2351 21 6 -0.7697 2.6779 3.2362 22 6 0.3383 2.0402 2.7041 23 9 0.5979 0.7543 3.0270 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 4.9851 3.5072 -0.7580 30 1 3.1730 2.7601 1.0791 31 1 2.7460 1.2761 1.9643 32 1 -0.4067 5.7006 1.7840 33 1 -1.4263 2.1472 3.9097 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340563359.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:19 Heat of formation + Delta-G solvation = -45.103998 kcal Electronic energy + Delta-G solvation = -23445.752657 eV Core-core repulsion = 19532.919835 eV Total energy + Delta-G solvation = -3912.832822 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.092 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -48.85242 -48.52479 -41.93299 -38.74222 -36.40194 -36.35596 -32.39942 -32.16520 -30.39546 -29.34948 -27.42753 -25.16124 -23.68945 -22.87954 -21.78185 -20.61699 -19.36380 -18.63246 -17.39146 -17.28594 -16.92189 -16.53307 -15.90956 -15.60774 -15.40564 -15.12242 -14.98609 -14.14359 -13.97274 -13.84573 -12.83358 -12.75280 -12.70853 -12.09229 -12.01056 -11.84803 -11.48603 -11.37687 -11.29030 -11.01284 -10.98796 -10.97190 -10.82297 -10.50220 -10.33164 -10.19469 -8.98598 -8.86551 -8.78796 -7.16443 -6.33855 -3.70365 -0.10921 0.97725 1.48459 1.56306 3.11842 3.23621 3.24281 3.27714 4.10329 4.12858 4.29273 4.73462 4.74948 4.81639 5.06246 5.09799 5.20061 5.64110 5.75385 5.80305 5.91555 6.02075 6.09899 6.12286 6.37824 6.43152 6.46908 6.59898 6.78989 6.85016 7.11588 7.35029 7.86855 7.95976 8.61037 9.23093 9.76937 10.63099 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.017602 B = 0.007041 C = 0.005632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.302797 B = 3975.599171 C = 4970.670176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.138 3.862 3 N -0.556 5.556 4 C -0.244 4.244 5 H 0.072 0.928 6 C 0.020 3.980 7 N -0.850 5.850 8 Si 0.901 3.099 9 H -0.271 1.271 10 H -0.277 1.277 11 H -0.284 1.284 12 C 0.160 3.840 13 C -0.111 4.111 14 C 0.138 3.862 15 F -0.105 7.105 16 C -0.105 4.105 17 C -0.034 4.034 18 N 0.044 4.956 19 O -0.176 6.176 20 O -0.177 6.177 21 C -0.108 4.108 22 C 0.120 3.880 23 F -0.120 7.120 24 H 0.050 0.950 25 H 0.044 0.956 26 H 0.043 0.957 27 H 0.056 0.944 28 H 0.046 0.954 29 H 0.266 0.734 30 H 0.121 0.879 31 H 0.055 0.945 32 H 0.158 0.842 33 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.583 -0.910 4.904 6.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.013 3.987 3 N -0.271 5.271 4 C -0.372 4.372 5 H 0.090 0.910 6 C -0.184 4.184 7 N -0.488 5.488 8 Si 0.728 3.272 9 H -0.195 1.195 10 H -0.202 1.202 11 H -0.211 1.211 12 C 0.035 3.965 13 C -0.121 4.121 14 C 0.115 3.885 15 F -0.083 7.083 16 C -0.126 4.126 17 C -0.121 4.121 18 N 0.557 4.443 19 O -0.387 6.387 20 O -0.388 6.388 21 C -0.129 4.129 22 C 0.098 3.902 23 F -0.099 7.099 24 H 0.069 0.931 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.075 0.925 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.138 0.862 31 H 0.073 0.927 32 H 0.176 0.824 33 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -3.732 -1.251 4.510 5.986 hybrid contribution -0.443 0.870 -0.539 1.115 sum -4.175 -0.381 3.971 5.774 Atomic orbital electron populations 1.22355 0.99387 0.99881 1.01342 1.21029 0.92066 0.85593 1.00029 1.44129 1.73188 1.07999 1.01754 1.19387 1.06368 1.19222 0.92242 0.91029 1.25233 0.93806 1.00888 0.98466 1.69940 1.03798 1.35135 1.39913 0.86252 0.78359 0.81971 0.80600 1.19538 1.20241 1.21062 1.20315 0.91786 0.97983 0.86454 1.21690 1.04349 0.92485 0.93558 1.16600 0.89507 0.89632 0.92715 1.91615 1.69911 1.79395 1.67378 1.20756 0.92984 1.02259 0.96579 1.19853 0.91848 0.93889 1.06521 1.43351 1.01401 1.00629 0.98950 1.94512 1.78343 1.01140 1.64715 1.94499 1.45409 1.67158 1.31758 1.20616 0.97645 0.92983 1.01683 1.16596 0.94955 0.80102 0.98583 1.91523 1.93542 1.33698 1.91118 0.93089 0.93690 0.93754 0.92520 0.93545 0.92337 0.86210 0.92686 0.82439 0.82555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.89 10.20 37.16 0.38 -2.51 16 2 C 0.14 2.59 6.44 -4.04 -0.03 2.56 16 3 N -0.56 -12.10 2.44 -174.61 -0.43 -12.52 16 4 C -0.24 -5.82 9.47 -15.06 -0.14 -5.96 16 5 H 0.07 1.73 7.92 -52.49 -0.42 1.31 16 6 C 0.02 0.49 4.27 -17.43 -0.07 0.42 16 7 N -0.85 -21.24 11.33 55.49 0.63 -20.61 16 8 Si 0.90 19.61 29.58 -169.99 -5.03 14.58 16 9 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 10 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 11 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 12 C 0.16 3.31 5.10 -5.20 -0.03 3.28 16 13 C -0.11 -2.06 5.46 -104.49 -0.57 -2.63 16 14 C 0.14 2.53 7.24 -39.43 -0.29 2.25 16 15 F -0.10 -2.15 15.75 2.25 0.04 -2.11 16 16 C -0.10 -1.71 9.53 -39.51 -0.38 -2.09 16 17 C -0.03 -0.56 6.85 -79.97 -0.55 -1.11 16 18 N 0.04 0.74 4.45 33.95 0.15 0.89 16 19 O -0.18 -3.03 18.45 -29.46 -0.54 -3.58 16 20 O -0.18 -3.00 18.45 -29.46 -0.54 -3.54 16 21 C -0.11 -1.65 9.53 -39.51 -0.38 -2.03 16 22 C 0.12 1.97 5.76 -39.43 -0.23 1.74 16 23 F -0.12 -1.94 15.67 2.25 0.04 -1.90 16 24 H 0.05 0.91 8.14 -51.92 -0.42 0.49 16 25 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.04 0.76 5.58 -51.93 -0.29 0.47 16 27 H 0.06 1.07 8.09 -51.93 -0.42 0.65 16 28 H 0.05 0.82 7.83 -51.93 -0.41 0.41 16 29 H 0.27 6.40 8.31 -40.82 -0.34 6.06 16 30 H 0.12 2.79 4.85 -51.93 -0.25 2.53 16 31 H 0.05 1.08 7.35 -51.93 -0.38 0.70 16 32 H 0.16 2.32 7.61 -52.48 -0.40 1.92 16 33 H 0.16 2.08 7.61 -52.49 -0.40 1.68 16 LS Contribution 298.73 15.07 4.50 4.50 Total: -1.00 -24.43 298.73 -6.41 -30.84 By element: Atomic # 1 Polarization: 2.47 SS G_CDS: -2.94 Total: -0.48 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: -2.27 Total: -6.07 kcal Atomic # 7 Polarization: -32.59 SS G_CDS: 0.35 Total: -32.24 kcal Atomic # 8 Polarization: -6.03 SS G_CDS: -1.09 Total: -7.12 kcal Atomic # 9 Polarization: -4.08 SS G_CDS: 0.07 Total: -4.01 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.03 Total: 14.58 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -24.43 -6.41 -30.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340563359.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.264 kcal (2) G-P(sol) polarization free energy of solvation -24.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds