Wall clock time and date at job start Tue Mar 31 2020 06:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.47404 * 2 1 4 4 C 1.36940 * 119.99923 * 275.94461 * 3 2 1 5 5 H 1.07998 * 120.00140 * 35.09676 * 4 3 2 6 6 C 1.38811 * 119.99663 * 215.09964 * 4 3 2 7 7 N 1.31615 * 120.00114 * 22.00773 * 6 4 3 8 8 Si 1.86800 * 119.99767 * 202.00389 * 6 4 3 9 9 H 1.48498 * 109.47250 * 0.02562 * 8 6 4 10 10 H 1.48507 * 109.46742 * 120.00394 * 8 6 4 11 11 H 1.48501 * 109.47255 * 240.00176 * 8 6 4 12 12 C 1.46495 * 120.00119 * 95.93772 * 3 2 1 13 13 C 1.50701 * 109.47514 * 270.00117 * 12 3 2 14 14 C 1.38419 * 120.02718 * 270.02065 * 13 12 3 15 15 F 1.35095 * 120.01129 * 359.97438 * 14 13 12 16 16 C 1.38469 * 119.97400 * 179.97438 * 14 13 12 17 17 C 1.38210 * 120.02646 * 0.02562 * 16 14 13 18 18 N 1.48019 * 119.97243 * 179.97438 * 17 16 14 19 19 O 1.21803 * 120.00264 * 359.97438 * 18 17 16 20 20 O 1.21803 * 119.99544 * 180.02562 * 18 17 16 21 21 C 1.38200 * 120.05173 * 359.97438 * 17 16 14 22 22 C 1.38420 * 120.02328 * 89.99852 * 13 12 3 23 23 F 1.35102 * 120.01284 * 0.02562 * 22 13 12 24 24 H 1.09008 * 109.46738 * 60.00134 * 1 2 3 25 25 H 1.09000 * 109.47198 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47143 * 300.00590 * 1 2 3 27 27 H 1.09000 * 109.46773 * 239.99556 * 2 1 3 28 28 H 1.09001 * 109.46634 * 120.00207 * 2 1 3 29 29 H 0.97001 * 120.00103 * 179.97438 * 7 6 4 30 30 H 1.08999 * 109.47441 * 150.00105 * 12 3 2 31 31 H 1.09000 * 109.47388 * 30.00404 * 12 3 2 32 32 H 1.08004 * 119.98524 * 180.27482 * 16 14 13 33 33 H 1.07998 * 119.98981 * 179.97438 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1309 2.0676 -1.1796 5 1 1.4127 1.9051 -1.9696 6 6 3.1681 2.9724 -1.3598 7 7 4.2602 2.8751 -0.6318 8 14 3.0138 4.3279 -2.6358 9 1 1.6980 4.2204 -3.3157 10 1 3.1189 5.6503 -1.9682 11 1 4.1016 4.1912 -3.6374 12 6 2.3864 2.0280 1.2619 13 6 1.1802 2.7210 1.8416 14 6 0.9131 4.0385 1.5118 15 9 1.7340 4.7041 0.6702 16 6 -0.1957 4.6739 2.0447 17 6 -1.0354 3.9934 2.9061 18 7 -2.2200 4.6740 3.4756 19 8 -2.4543 5.8335 3.1853 20 8 -2.9600 4.0748 4.2351 21 6 -0.7697 2.6779 3.2362 22 6 0.3383 2.0402 2.7041 23 9 0.5979 0.7543 3.0270 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 4.9851 3.5072 -0.7580 30 1 3.1730 2.7601 1.0791 31 1 2.7460 1.2761 1.9643 32 1 -0.4067 5.7006 1.7840 33 1 -1.4263 2.1472 3.9097 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340563359.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:19 Heat of formation + Delta-G solvation = -55.274709 kcal Electronic energy + Delta-G solvation = -23446.193692 eV Core-core repulsion = 19532.919835 eV Total energy + Delta-G solvation = -3913.273857 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.092 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.22868 -50.08946 -43.36236 -40.23743 -37.91031 -37.77549 -34.00213 -33.64476 -31.83518 -30.82913 -28.93928 -26.72496 -25.18103 -24.32440 -23.22237 -22.14505 -20.79599 -20.04148 -18.95553 -18.74422 -18.40897 -17.96573 -17.37287 -17.08786 -16.86863 -16.70390 -16.48130 -15.65006 -15.60872 -15.35290 -14.28401 -14.19903 -14.13183 -13.56370 -13.48799 -13.31504 -13.09314 -12.80595 -12.74797 -12.68048 -12.45461 -12.37916 -12.35988 -12.15472 -11.94390 -11.67188 -10.65378 -10.36360 -10.20642 -8.78524 -7.99598 -5.53788 -1.44906 -0.45785 0.07495 0.09907 1.39169 1.46279 1.51174 1.83341 2.42641 2.67320 2.82737 3.12320 3.33137 3.34507 3.54608 3.61172 3.77378 4.18663 4.33105 4.38467 4.47636 4.58932 4.69782 4.74852 4.88698 5.00385 5.01246 5.19476 5.30447 5.44146 5.48247 5.62411 6.32042 6.42849 6.99827 7.66377 8.17327 8.97961 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.017602 B = 0.007041 C = 0.005632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.302797 B = 3975.599171 C = 4970.670176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.136 3.864 3 N -0.579 5.579 4 C -0.267 4.267 5 H 0.056 0.944 6 C -0.007 4.007 7 N -0.897 5.897 8 Si 0.934 3.066 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.289 1.289 12 C 0.165 3.835 13 C -0.106 4.106 14 C 0.128 3.872 15 F -0.119 7.119 16 C -0.095 4.095 17 C -0.016 4.016 18 N 0.038 4.962 19 O -0.174 6.174 20 O -0.152 6.152 21 C -0.088 4.088 22 C 0.132 3.868 23 F -0.112 7.112 24 H 0.034 0.966 25 H 0.070 0.930 26 H 0.041 0.959 27 H 0.043 0.957 28 H 0.054 0.946 29 H 0.258 0.742 30 H 0.095 0.905 31 H 0.059 0.941 32 H 0.178 0.822 33 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.626 -0.782 7.459 10.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.011 3.989 3 N -0.298 5.298 4 C -0.397 4.397 5 H 0.074 0.926 6 C -0.206 4.206 7 N -0.538 5.538 8 Si 0.762 3.238 9 H -0.196 1.196 10 H -0.209 1.209 11 H -0.216 1.216 12 C 0.039 3.961 13 C -0.112 4.112 14 C 0.106 3.894 15 F -0.097 7.097 16 C -0.115 4.115 17 C -0.101 4.101 18 N 0.556 4.444 19 O -0.386 6.386 20 O -0.370 6.370 21 C -0.108 4.108 22 C 0.110 3.890 23 F -0.091 7.091 24 H 0.053 0.947 25 H 0.089 0.911 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.112 0.888 31 H 0.077 0.923 32 H 0.195 0.805 33 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -6.806 -1.086 7.080 9.881 hybrid contribution 0.068 0.937 -0.805 1.238 sum -6.738 -0.149 6.275 9.209 Atomic orbital electron populations 1.22202 0.97827 1.01193 1.00341 1.21074 0.93266 0.84783 0.99777 1.43985 1.75246 1.09216 1.01324 1.19175 1.06471 1.20349 0.93695 0.92610 1.25504 0.93735 1.02051 0.99356 1.70004 1.04540 1.36487 1.42799 0.85745 0.77812 0.80708 0.79507 1.19612 1.20907 1.21568 1.20023 0.91857 0.97613 0.86605 1.21759 1.02310 0.93148 0.94028 1.16833 0.90073 0.89845 0.92602 1.91597 1.70499 1.79622 1.68003 1.20895 0.91947 1.03108 0.95550 1.20044 0.91007 0.94038 1.04988 1.43400 1.01313 1.00710 0.98944 1.94555 1.78291 1.01064 1.64716 1.94519 1.44789 1.66913 1.30769 1.20910 0.96995 0.92364 1.00534 1.16540 0.94595 0.80214 0.97623 1.91561 1.93457 1.33166 1.90871 0.94659 0.91108 0.93952 0.93828 0.92747 0.93262 0.88761 0.92273 0.80471 0.79266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.09 10.20 71.98 0.73 -4.35 16 2 C 0.14 5.11 6.44 86.38 0.56 5.67 16 3 N -0.58 -25.83 2.44 -706.35 -1.72 -27.55 16 4 C -0.27 -13.37 9.47 84.03 0.80 -12.57 16 5 H 0.06 2.86 7.92 -2.91 -0.02 2.84 16 6 C -0.01 -0.33 4.27 84.86 0.36 0.03 16 7 N -0.90 -47.55 11.33 21.65 0.25 -47.31 16 8 Si 0.93 42.06 29.58 68.60 2.03 44.09 16 9 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 10 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 11 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 12 C 0.17 6.91 5.10 85.63 0.44 7.35 16 13 C -0.11 -3.74 5.46 -19.78 -0.11 -3.85 16 14 C 0.13 4.49 7.24 22.37 0.16 4.66 16 15 F -0.12 -4.89 15.75 44.97 0.71 -4.18 16 16 C -0.09 -2.76 9.53 22.32 0.21 -2.55 16 17 C -0.02 -0.45 6.85 36.36 0.25 -0.20 16 18 N 0.04 1.08 4.45 -46.50 -0.21 0.87 16 19 O -0.17 -5.19 18.45 18.88 0.35 -4.84 16 20 O -0.15 -4.23 18.45 18.88 0.35 -3.88 16 21 C -0.09 -2.21 9.53 22.32 0.21 -2.00 16 22 C 0.13 3.86 5.76 22.37 0.13 3.99 16 23 F -0.11 -3.20 15.67 44.97 0.70 -2.50 16 24 H 0.03 1.23 8.14 -2.38 -0.02 1.22 16 25 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.04 1.35 5.58 -2.39 -0.01 1.33 16 27 H 0.04 1.70 8.09 -2.39 -0.02 1.68 16 28 H 0.05 1.89 7.83 -2.39 -0.02 1.87 16 29 H 0.26 13.29 8.31 -92.71 -0.77 12.52 16 30 H 0.09 4.57 4.85 -2.39 -0.01 4.55 16 31 H 0.06 2.33 7.35 -2.39 -0.02 2.31 16 32 H 0.18 4.54 7.61 -2.91 -0.02 4.52 16 33 H 0.19 3.71 7.61 -2.91 -0.02 3.69 16 Total: -1.00 -53.69 298.73 7.36 -46.33 By element: Atomic # 1 Polarization: 1.64 SS G_CDS: 1.16 Total: 2.80 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: 3.74 Total: -3.82 kcal Atomic # 7 Polarization: -72.31 SS G_CDS: -1.68 Total: -73.99 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.70 Total: -8.73 kcal Atomic # 9 Polarization: -8.09 SS G_CDS: 1.41 Total: -6.68 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Total: -53.69 7.36 -46.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340563359.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.948 kcal (2) G-P(sol) polarization free energy of solvation -53.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds