Wall clock time and date at job start Tue Mar 31 2020 06:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35675 * 117.00204 * 2 1 4 4 C 1.38919 * 119.68756 * 180.02562 * 3 2 1 5 5 C 1.38382 * 119.11225 * 180.02562 * 4 3 2 6 6 C 1.38836 * 118.48500 * 359.97438 * 5 4 3 7 7 C 1.38047 * 119.28816 * 0.02562 * 6 5 4 8 8 C 1.50703 * 119.58135 * 179.97438 * 7 6 5 9 9 F 1.39908 * 109.46738 * 60.00359 * 8 7 6 10 10 F 1.39899 * 109.47356 * 300.00054 * 8 7 6 11 11 C 1.52997 * 109.47029 * 179.97438 * 8 7 6 12 12 N 1.46498 * 109.47027 * 179.97438 * 11 8 7 13 13 C 1.34783 * 119.99949 * 180.02562 * 12 11 8 14 14 O 1.21689 * 119.99668 * 0.02562 * 13 12 11 15 15 C 1.46378 * 119.99766 * 180.02562 * 13 12 11 16 16 H 1.07996 * 120.00107 * 353.94296 * 15 13 12 17 17 C 1.40045 * 119.99804 * 173.94284 * 15 13 12 18 18 N 1.30672 * 120.00076 * 6.14730 * 17 15 13 19 19 Si 1.86801 * 120.00133 * 186.15220 * 17 15 13 20 20 H 1.48493 * 109.47433 * 94.98088 * 19 17 15 21 21 H 1.48500 * 109.47192 * 214.98404 * 19 17 15 22 22 H 1.48508 * 109.46705 * 334.97952 * 19 17 15 23 23 N 1.31966 * 120.83552 * 0.27186 * 7 6 5 24 24 H 1.08992 * 109.47190 * 60.00075 * 1 2 3 25 25 H 1.08999 * 109.46891 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46984 * 299.99863 * 1 2 3 27 27 H 1.07994 * 120.44765 * 0.04541 * 4 3 2 28 28 H 1.07999 * 120.75952 * 179.97438 * 5 4 3 29 29 H 1.08001 * 120.35461 * 180.02562 * 6 5 4 30 30 H 1.09002 * 109.46620 * 60.00619 * 11 8 7 31 31 H 1.09000 * 109.47770 * 300.00553 * 11 8 7 32 32 H 0.96999 * 120.00293 * 0.02562 * 12 11 8 33 33 H 0.97001 * 120.00206 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4326 1.2739 -0.0005 5 6 4.0485 2.5132 0.0000 6 6 3.2504 3.6492 0.0005 7 6 1.8770 3.5097 0.0010 8 6 1.0044 4.7384 0.0022 9 9 1.2716 5.5011 -1.1398 10 9 1.2726 5.4998 1.1448 11 6 -0.4669 4.3190 0.0019 12 7 -1.3152 5.5134 0.0037 13 6 -2.6571 5.3870 0.0043 14 8 -3.1639 4.2807 0.0038 15 6 -3.5046 6.5804 0.0054 16 1 -3.0589 7.5591 0.1045 17 6 -4.8934 6.4531 -0.1219 18 7 -5.4437 5.2679 -0.1209 19 14 -5.9593 7.9775 -0.2933 20 1 -6.2080 8.2485 -1.7320 21 1 -7.2539 7.7568 0.3998 22 1 -5.2633 9.1392 0.3162 23 7 1.3186 2.3140 0.0064 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 4.0229 0.3696 -0.0017 28 1 5.1254 2.5947 0.0000 29 1 3.6993 4.6315 0.0006 30 1 -0.6753 3.7245 0.8915 31 1 -0.6756 3.7259 -0.8885 32 1 -0.9111 6.3952 0.0044 33 1 -6.4056 5.1797 -0.2088 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343166755.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:45 Heat of formation + Delta-G solvation = -132.574974 kcal Electronic energy + Delta-G solvation = -22441.414116 eV Core-core repulsion = 18524.788268 eV Total energy + Delta-G solvation = -3916.625848 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.092 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.93643 -46.89941 -40.85112 -38.12233 -37.25708 -33.90252 -32.82419 -32.23954 -31.43916 -28.69370 -27.36874 -26.08336 -24.05206 -23.13000 -21.62740 -19.83965 -18.57000 -17.89983 -17.50482 -17.05709 -16.34103 -16.17086 -16.08161 -15.69014 -15.16451 -14.38840 -14.02717 -14.01937 -13.86632 -13.71489 -13.53761 -13.27144 -13.19784 -12.88535 -12.42155 -12.11073 -11.77771 -11.51547 -11.30494 -11.29854 -11.02889 -10.93063 -10.45536 -10.24539 -10.21171 -9.80463 -8.84849 -8.80330 -7.65901 -7.61226 -6.20370 -4.63928 0.66912 1.00678 2.86644 3.15468 3.21759 3.23380 3.26681 3.37952 3.99910 4.15823 4.22208 4.57059 4.61416 4.73639 4.79055 4.87636 4.92965 5.04878 5.26148 5.28475 5.39350 5.60888 5.72256 5.76215 5.82581 6.07107 6.25417 6.31035 7.00266 7.44300 7.51692 7.85132 7.98313 8.30956 9.02329 9.46244 10.57628 10.75469 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.024736 B = 0.004288 C = 0.003747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.663747 B = 6527.875304 C = 7470.512506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.307 6.307 3 C 0.325 3.675 4 C -0.174 4.174 5 C -0.042 4.042 6 C -0.174 4.174 7 C 0.113 3.887 8 C 0.339 3.661 9 F -0.184 7.184 10 F -0.184 7.184 11 C 0.117 3.883 12 N -0.767 5.767 13 C 0.558 3.442 14 O -0.578 6.578 15 C -0.543 4.543 16 H 0.070 0.930 17 C 0.088 3.912 18 N -0.767 5.767 19 Si 0.909 3.091 20 H -0.272 1.272 21 H -0.279 1.279 22 H -0.264 1.264 23 N -0.505 5.505 24 H 0.065 0.935 25 H 0.098 0.902 26 H 0.065 0.935 27 H 0.147 0.853 28 H 0.149 0.851 29 H 0.144 0.856 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.384 0.616 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.768 -5.996 -0.027 18.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.213 6.213 3 C 0.145 3.855 4 C -0.195 4.195 5 C -0.067 4.067 6 C -0.194 4.194 7 C -0.026 4.026 8 C 0.301 3.699 9 F -0.164 7.164 10 F -0.164 7.164 11 C -0.009 4.009 12 N -0.424 5.424 13 C 0.362 3.638 14 O -0.461 6.461 15 C -0.580 4.580 16 H 0.088 0.912 17 C -0.132 4.132 18 N -0.396 5.396 19 Si 0.734 3.266 20 H -0.198 1.198 21 H -0.205 1.205 22 H -0.188 1.188 23 N -0.228 5.228 24 H 0.084 0.916 25 H 0.117 0.883 26 H 0.084 0.916 27 H 0.165 0.835 28 H 0.167 0.833 29 H 0.162 0.838 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.216 0.784 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 16.397 -7.266 -0.023 17.934 hybrid contribution 0.456 1.458 -0.105 1.532 sum 16.853 -5.808 -0.128 17.826 Atomic orbital electron populations 1.22994 0.76061 1.03328 1.03583 1.86226 1.23768 1.23776 1.87549 1.19776 0.89316 0.84491 0.91876 1.21207 0.92039 0.99834 1.06401 1.21405 1.00766 0.90759 0.93776 1.21765 0.93343 1.00910 1.03415 1.20875 0.91914 0.91618 0.98144 1.19640 0.96322 0.81699 0.72192 1.93057 1.95285 1.77360 1.50739 1.93054 1.95265 1.77432 1.50696 1.21620 0.83262 0.91325 1.04725 1.46137 1.07296 1.05715 1.83289 1.18224 0.78593 0.90682 0.76290 1.90599 1.72638 1.27999 1.54876 1.20862 0.91058 0.92392 1.53688 0.91208 1.25704 0.98261 0.96577 0.92647 1.70027 1.11270 1.23258 1.35056 0.86332 0.79290 0.82158 0.78828 1.19777 1.20451 1.18817 1.66928 1.40888 0.97891 1.17129 0.91617 0.88330 0.91594 0.83502 0.83322 0.83823 0.89944 0.89945 0.78407 0.92092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 10.38 101.05 1.05 1.47 16 2 O -0.31 -3.93 10.48 -18.73 -0.20 -4.13 16 3 C 0.33 4.33 7.49 -17.12 -0.13 4.20 16 4 C -0.17 -1.75 10.04 -39.28 -0.39 -2.14 16 5 C -0.04 -0.37 10.17 -39.31 -0.40 -0.77 16 6 C -0.17 -1.99 9.62 -39.43 -0.38 -2.36 16 7 C 0.11 1.67 6.17 -82.60 -0.51 1.16 16 8 C 0.34 5.73 1.75 -27.88 -0.05 5.68 16 9 F -0.18 -3.10 16.83 2.25 0.04 -3.06 16 10 F -0.18 -3.10 16.83 2.25 0.04 -3.06 16 11 C 0.12 2.41 4.39 -4.04 -0.02 2.39 16 12 N -0.77 -18.14 5.41 -61.72 -0.33 -18.48 16 13 C 0.56 16.23 7.74 -12.98 -0.10 16.13 16 14 O -0.58 -18.87 15.05 5.20 0.08 -18.79 16 15 C -0.54 -15.60 9.53 -35.63 -0.34 -15.94 16 16 H 0.07 1.84 7.85 -52.49 -0.41 1.43 16 17 C 0.09 2.47 5.49 -17.37 -0.10 2.38 16 18 N -0.77 -23.11 11.85 55.55 0.66 -22.45 16 19 Si 0.91 20.31 29.56 -169.99 -5.03 15.28 16 20 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 21 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 22 H -0.26 -5.71 7.11 56.52 0.40 -5.30 16 23 N -0.50 -7.80 7.85 -9.55 -0.07 -7.87 16 24 H 0.07 0.86 8.11 -51.93 -0.42 0.44 16 25 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 27 H 0.15 1.07 8.06 -52.49 -0.42 0.65 16 28 H 0.15 0.76 8.06 -52.49 -0.42 0.33 16 29 H 0.14 1.38 8.06 -52.49 -0.42 0.96 16 30 H 0.08 1.78 8.05 -51.93 -0.42 1.36 16 31 H 0.08 1.78 8.06 -51.93 -0.42 1.37 16 32 H 0.38 8.24 8.34 -40.82 -0.34 7.90 16 33 H 0.27 7.30 8.29 -40.82 -0.34 6.96 16 LS Contribution 307.09 15.07 4.63 4.63 Total: -1.00 -35.12 307.09 -4.81 -39.93 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -3.26 Total: 5.79 kcal Atomic # 6 Polarization: 13.57 SS G_CDS: -1.36 Total: 12.20 kcal Atomic # 7 Polarization: -49.05 SS G_CDS: 0.25 Total: -48.80 kcal Atomic # 8 Polarization: -22.80 SS G_CDS: -0.12 Total: -22.92 kcal Atomic # 9 Polarization: -6.20 SS G_CDS: 0.08 Total: -6.12 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.03 Total: 15.28 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -35.12 -4.81 -39.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343166755.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.643 kcal (2) G-P(sol) polarization free energy of solvation -35.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds