Wall clock time and date at job start Tue Mar 31 2020 05:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47287 * 2 1 4 4 C 1.50696 * 109.47430 * 120.00564 * 2 1 3 5 5 C 1.38248 * 119.97128 * 239.99664 * 4 2 1 6 6 C 1.38196 * 120.02483 * 179.97438 * 5 4 2 7 7 C 1.38458 * 119.97492 * 0.02562 * 6 5 4 8 8 F 1.35104 * 120.02786 * 179.97438 * 7 6 5 9 9 C 1.38465 * 119.94675 * 0.24873 * 7 6 5 10 10 C 1.38197 * 119.97511 * 359.47283 * 9 7 6 11 11 S 1.81398 * 109.46973 * 240.00422 * 2 1 3 12 12 O 1.42098 * 108.58165 * 174.48239 * 11 2 1 13 13 O 1.42099 * 108.57886 * 305.51256 * 11 2 1 14 14 C 1.81402 * 101.92444 * 59.99631 * 11 2 1 15 15 C 1.52997 * 109.47527 * 179.97438 * 14 11 2 16 16 C 1.50703 * 109.47433 * 180.02562 * 15 14 11 17 17 H 1.08001 * 119.99551 * 0.02562 * 16 15 14 18 18 C 1.37873 * 120.00215 * 180.02562 * 16 15 14 19 19 N 1.31512 * 119.99808 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 120.00020 * 0.02562 * 18 16 15 21 21 H 1.48506 * 109.47330 * 89.99793 * 20 18 16 22 22 H 1.48498 * 109.47233 * 209.99915 * 20 18 16 23 23 H 1.48504 * 109.47048 * 329.99862 * 20 18 16 24 24 H 1.09001 * 109.46818 * 299.99522 * 1 2 3 25 25 H 1.09001 * 109.47810 * 59.99492 * 1 2 3 26 26 H 1.09001 * 109.47287 * 180.02562 * 1 2 3 27 27 H 1.08001 * 119.98881 * 0.02562 * 5 4 2 28 28 H 1.07995 * 120.01604 * 180.02562 * 6 5 4 29 29 H 1.08007 * 120.01064 * 179.75151 * 9 7 6 30 30 H 1.07994 * 119.98821 * 180.29814 * 10 9 7 31 31 H 1.09000 * 109.47217 * 300.00461 * 14 11 2 32 32 H 1.09007 * 109.47098 * 59.99931 * 14 11 2 33 33 H 1.09000 * 109.47283 * 300.00463 * 15 14 11 34 34 H 1.09005 * 109.47258 * 60.00312 * 15 14 11 35 35 H 0.97001 * 119.99600 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 6 2.8272 -0.0381 2.1400 6 6 3.2881 -0.6885 3.2689 7 6 2.9540 -2.0141 3.4885 8 9 3.4044 -2.6510 4.5915 9 6 2.1625 -2.6881 2.5739 10 6 1.6980 -2.0340 1.4486 11 16 2.1346 -0.8550 -1.4812 12 8 3.5495 -0.7329 -1.5287 13 8 1.5478 -2.1483 -1.5286 14 6 1.4227 0.1516 -2.8119 15 6 1.8340 -0.4289 -4.1664 16 6 1.2431 0.4077 -5.2718 17 1 0.6354 1.2678 -5.0322 18 6 1.4783 0.0753 -6.5890 19 7 0.9622 0.8051 -7.5536 20 14 2.5289 -1.4127 -7.0035 21 1 1.6635 -2.6145 -7.1137 22 1 3.2243 -1.1833 -8.2953 23 1 3.5340 -1.6232 -5.9308 24 1 -0.3633 0.5138 0.8900 25 1 -0.3635 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 3.0874 0.9960 1.9687 28 1 3.9087 -0.1630 3.9796 29 1 1.9045 -3.7233 2.7421 30 1 1.0767 -2.5581 0.7375 31 1 0.3359 0.1472 -2.7291 32 1 1.7892 1.1749 -2.7291 33 1 2.9208 -0.4241 -4.2488 34 1 1.4678 -1.4523 -4.2494 35 1 1.1281 0.5714 -8.4804 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352381998.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:54 Heat of formation + Delta-G solvation = -101.436602 kcal Electronic energy + Delta-G solvation = -20204.796345 eV Core-core repulsion = 16823.441183 eV Total energy + Delta-G solvation = -3381.355162 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.083 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.14153 -39.58987 -36.70939 -35.72044 -34.51595 -33.96662 -31.56188 -31.43817 -29.38609 -25.97368 -24.55853 -23.34942 -21.95002 -20.96612 -18.58031 -17.93870 -17.41389 -16.80239 -16.59765 -15.87577 -15.78945 -15.66527 -15.06632 -14.59414 -14.28122 -14.00506 -13.78733 -13.61678 -13.18794 -13.02925 -12.86676 -12.70551 -12.11337 -11.91105 -11.79773 -11.70953 -11.64789 -11.28775 -11.21128 -11.16993 -10.57880 -10.40889 -10.11551 -9.65717 -9.40472 -9.36510 -8.78670 -8.67397 -6.18151 -4.19629 0.12506 0.88094 0.94049 3.01395 3.25900 3.26493 3.33937 3.39151 3.73506 3.96928 4.10987 4.26331 4.35332 4.43997 4.60442 4.73582 4.88893 5.00536 5.11053 5.14109 5.32725 5.43593 5.46145 5.52064 5.62185 5.70478 5.82366 5.87001 5.94321 6.13444 6.26049 6.57075 6.81644 6.94255 7.53134 8.34157 8.82359 9.41672 10.94116 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.037751 B = 0.003886 C = 0.003751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.515846 B = 7203.650229 C = 7462.363822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.541 4.541 3 H 0.144 0.856 4 C -0.084 4.084 5 C -0.072 4.072 6 C -0.153 4.153 7 C 0.099 3.901 8 F -0.139 7.139 9 C -0.146 4.146 10 C -0.093 4.093 11 S 2.393 3.607 12 O -0.940 6.940 13 O -0.938 6.938 14 C -0.565 4.565 15 C -0.006 4.006 16 C -0.521 4.521 17 H 0.078 0.922 18 C 0.072 3.928 19 N -0.896 5.896 20 Si 0.868 3.132 21 H -0.271 1.271 22 H -0.282 1.282 23 H -0.261 1.261 24 H 0.077 0.923 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.138 0.862 28 H 0.139 0.861 29 H 0.141 0.859 30 H 0.153 0.847 31 H 0.129 0.871 32 H 0.127 0.873 33 H 0.034 0.966 34 H 0.031 0.969 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.457 -1.841 21.216 21.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.646 4.646 3 H 0.162 0.838 4 C -0.086 4.086 5 C -0.091 4.091 6 C -0.172 4.172 7 C 0.080 3.920 8 F -0.118 7.118 9 C -0.165 4.165 10 C -0.111 4.111 11 S 2.578 3.422 12 O -0.937 6.937 13 O -0.935 6.935 14 C -0.698 4.698 15 C -0.045 4.045 16 C -0.560 4.560 17 H 0.096 0.904 18 C -0.130 4.130 19 N -0.533 5.533 20 Si 0.695 3.305 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.185 1.185 24 H 0.096 0.904 25 H 0.099 0.901 26 H 0.097 0.903 27 H 0.156 0.844 28 H 0.157 0.843 29 H 0.159 0.841 30 H 0.171 0.829 31 H 0.147 0.853 32 H 0.145 0.855 33 H 0.052 0.948 34 H 0.049 0.951 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.001 -2.603 21.054 21.238 hybrid contribution 0.153 0.006 0.002 0.153 sum 1.154 -2.597 21.057 21.247 Atomic orbital electron populations 1.21732 0.88915 1.04511 1.04621 1.29291 1.07083 1.13173 1.15098 0.83846 1.19094 0.99633 0.94185 0.95643 1.20963 0.95393 1.00286 0.92428 1.21139 1.02914 0.93421 0.99706 1.17793 0.98020 0.91431 0.84788 1.91505 1.87446 1.81958 1.50898 1.21154 0.99508 1.01285 0.94572 1.21354 0.98709 0.93752 0.97296 1.09079 0.76674 0.78223 0.78224 1.93549 1.27483 1.87139 1.85496 1.93515 1.79265 1.35270 1.85480 1.30083 1.12449 1.13724 1.13505 1.19434 0.97967 0.97284 0.89835 1.20853 1.32863 1.13352 0.88917 0.90356 1.24969 0.95269 0.96546 0.96252 1.69878 1.44495 1.39117 0.99857 0.86934 0.81543 0.83509 0.78561 1.19627 1.20751 1.18542 0.90427 0.90110 0.90321 0.84398 0.84298 0.84088 0.82934 0.85282 0.85473 0.94786 0.95118 0.92351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 8.76 37.15 0.33 -0.96 16 2 C -0.54 -5.94 2.94 -27.89 -0.08 -6.02 16 3 H 0.14 1.17 7.87 -51.92 -0.41 0.76 16 4 C -0.08 -0.98 4.78 -104.62 -0.50 -1.48 16 5 C -0.07 -0.73 9.67 -39.59 -0.38 -1.11 16 6 C -0.15 -1.51 10.03 -39.52 -0.40 -1.91 16 7 C 0.10 1.09 7.30 -39.42 -0.29 0.80 16 8 F -0.14 -1.56 17.27 2.25 0.04 -1.53 16 9 C -0.15 -1.60 10.03 -39.51 -0.40 -1.99 16 10 C -0.09 -1.10 8.56 -39.59 -0.34 -1.44 16 11 S 2.39 38.15 4.08 -107.50 -0.44 37.71 16 12 O -0.94 -18.15 18.10 -57.83 -1.05 -19.19 16 13 O -0.94 -16.79 16.20 -57.83 -0.94 -17.73 16 14 C -0.57 -9.68 5.29 37.16 0.20 -9.48 16 15 C -0.01 -0.15 4.05 -27.88 -0.11 -0.26 16 16 C -0.52 -14.27 9.66 -34.44 -0.33 -14.60 16 17 H 0.08 2.23 7.99 -52.49 -0.42 1.81 16 18 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 19 N -0.90 -26.77 13.96 55.43 0.77 -25.99 16 20 Si 0.87 21.35 27.47 -169.99 -4.67 16.68 16 21 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 23 H -0.26 -6.26 6.54 56.52 0.37 -5.89 16 24 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.08 0.66 6.56 -51.93 -0.34 0.32 16 26 H 0.08 0.73 7.30 -51.93 -0.38 0.35 16 27 H 0.14 1.05 7.94 -52.49 -0.42 0.63 16 28 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 29 H 0.14 1.24 8.06 -52.48 -0.42 0.82 16 30 H 0.15 1.78 6.26 -52.49 -0.33 1.45 16 31 H 0.13 1.90 6.87 -51.92 -0.36 1.54 16 32 H 0.13 1.90 8.14 -51.92 -0.42 1.48 16 33 H 0.03 0.80 7.20 -51.93 -0.37 0.43 16 34 H 0.03 0.71 7.57 -51.93 -0.39 0.32 16 35 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 310.64 15.07 4.68 4.68 Total: -1.00 -34.16 310.64 -8.28 -42.44 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: -4.27 Total: -0.58 kcal Atomic # 6 Polarization: -34.09 SS G_CDS: -2.41 Total: -36.49 kcal Atomic # 7 Polarization: -26.77 SS G_CDS: 0.77 Total: -25.99 kcal Atomic # 8 Polarization: -34.94 SS G_CDS: -1.98 Total: -36.92 kcal Atomic # 9 Polarization: -1.56 SS G_CDS: 0.04 Total: -1.53 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.67 Total: 16.68 kcal Atomic # 16 Polarization: 38.15 SS G_CDS: -0.44 Total: 37.71 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -34.16 -8.28 -42.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352381998.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.997 kcal (2) G-P(sol) polarization free energy of solvation -34.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds