Wall clock time and date at job start Tue Mar 31 2020 05:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47287 * 2 1 4 4 C 1.50696 * 109.47430 * 120.00564 * 2 1 3 5 5 C 1.38248 * 119.97128 * 239.99664 * 4 2 1 6 6 C 1.38196 * 120.02483 * 179.97438 * 5 4 2 7 7 C 1.38458 * 119.97492 * 0.02562 * 6 5 4 8 8 F 1.35104 * 120.02786 * 179.97438 * 7 6 5 9 9 C 1.38465 * 119.94675 * 0.24873 * 7 6 5 10 10 C 1.38197 * 119.97511 * 359.47283 * 9 7 6 11 11 S 1.81398 * 109.46973 * 240.00422 * 2 1 3 12 12 O 1.42098 * 108.58165 * 174.48239 * 11 2 1 13 13 O 1.42099 * 108.57886 * 305.51256 * 11 2 1 14 14 C 1.81402 * 101.92444 * 59.99631 * 11 2 1 15 15 C 1.52997 * 109.47527 * 179.97438 * 14 11 2 16 16 C 1.50703 * 109.47433 * 180.02562 * 15 14 11 17 17 H 1.08001 * 119.99551 * 0.02562 * 16 15 14 18 18 C 1.37873 * 120.00215 * 180.02562 * 16 15 14 19 19 N 1.31512 * 119.99808 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 120.00020 * 0.02562 * 18 16 15 21 21 H 1.48506 * 109.47330 * 89.99793 * 20 18 16 22 22 H 1.48498 * 109.47233 * 209.99915 * 20 18 16 23 23 H 1.48504 * 109.47048 * 329.99862 * 20 18 16 24 24 H 1.09001 * 109.46818 * 299.99522 * 1 2 3 25 25 H 1.09001 * 109.47810 * 59.99492 * 1 2 3 26 26 H 1.09001 * 109.47287 * 180.02562 * 1 2 3 27 27 H 1.08001 * 119.98881 * 0.02562 * 5 4 2 28 28 H 1.07995 * 120.01604 * 180.02562 * 6 5 4 29 29 H 1.08007 * 120.01064 * 179.75151 * 9 7 6 30 30 H 1.07994 * 119.98821 * 180.29814 * 10 9 7 31 31 H 1.09000 * 109.47217 * 300.00461 * 14 11 2 32 32 H 1.09007 * 109.47098 * 59.99931 * 14 11 2 33 33 H 1.09000 * 109.47283 * 300.00463 * 15 14 11 34 34 H 1.09005 * 109.47258 * 60.00312 * 15 14 11 35 35 H 0.97001 * 119.99600 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 6 2.8272 -0.0381 2.1400 6 6 3.2881 -0.6885 3.2689 7 6 2.9540 -2.0141 3.4885 8 9 3.4044 -2.6510 4.5915 9 6 2.1625 -2.6881 2.5739 10 6 1.6980 -2.0340 1.4486 11 16 2.1346 -0.8550 -1.4812 12 8 3.5495 -0.7329 -1.5287 13 8 1.5478 -2.1483 -1.5286 14 6 1.4227 0.1516 -2.8119 15 6 1.8340 -0.4289 -4.1664 16 6 1.2431 0.4077 -5.2718 17 1 0.6354 1.2678 -5.0322 18 6 1.4783 0.0753 -6.5890 19 7 0.9622 0.8051 -7.5536 20 14 2.5289 -1.4127 -7.0035 21 1 1.6635 -2.6145 -7.1137 22 1 3.2243 -1.1833 -8.2953 23 1 3.5340 -1.6232 -5.9308 24 1 -0.3633 0.5138 0.8900 25 1 -0.3635 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 3.0874 0.9960 1.9687 28 1 3.9087 -0.1630 3.9796 29 1 1.9045 -3.7233 2.7421 30 1 1.0767 -2.5581 0.7375 31 1 0.3359 0.1472 -2.7291 32 1 1.7892 1.1749 -2.7291 33 1 2.9208 -0.4241 -4.2488 34 1 1.4678 -1.4523 -4.2494 35 1 1.1281 0.5714 -8.4804 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352381998.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:54 Heat of formation + Delta-G solvation = -124.471744 kcal Electronic energy + Delta-G solvation = -20205.795224 eV Core-core repulsion = 16823.441183 eV Total energy + Delta-G solvation = -3382.354041 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.083 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.97657 -40.39438 -38.03196 -37.04909 -35.88732 -35.32353 -33.47148 -32.22285 -30.22929 -27.78163 -25.38469 -24.13651 -23.34791 -22.28136 -19.86887 -19.17181 -18.75510 -18.00149 -17.53922 -17.03344 -16.95843 -16.65632 -16.33823 -16.12630 -15.44236 -15.23262 -14.82466 -14.63831 -14.53642 -14.07852 -13.84458 -13.76512 -13.55492 -13.17136 -13.05810 -13.02116 -12.91082 -12.83046 -12.43825 -12.19727 -12.03927 -11.93334 -11.73118 -11.51989 -10.98957 -10.83445 -10.18450 -9.65729 -8.36025 -6.40740 -1.07788 0.03468 0.15948 1.31125 1.33691 1.43820 1.82455 2.29847 2.43675 2.63508 2.98294 3.03581 3.15915 3.31468 3.58746 3.84293 3.88655 3.96227 4.10798 4.15228 4.26045 4.35551 4.60201 4.69795 4.79695 4.89411 4.90639 5.05244 5.10349 5.12581 5.13475 5.25441 5.33275 5.48984 5.78618 6.17997 6.65671 7.23886 8.79315 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.037751 B = 0.003886 C = 0.003751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.515846 B = 7203.650229 C = 7462.363822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.502 4.502 3 H 0.182 0.818 4 C -0.104 4.104 5 C -0.071 4.071 6 C -0.152 4.152 7 C 0.088 3.912 8 F -0.143 7.143 9 C -0.155 4.155 10 C -0.109 4.109 11 S 2.392 3.608 12 O -0.981 6.981 13 O -0.968 6.968 14 C -0.576 4.576 15 C -0.017 4.017 16 C -0.525 4.525 17 H 0.056 0.944 18 C 0.015 3.985 19 N -0.939 5.939 20 Si 0.921 3.079 21 H -0.261 1.261 22 H -0.274 1.274 23 H -0.255 1.255 24 H 0.103 0.897 25 H 0.093 0.907 26 H 0.074 0.926 27 H 0.169 0.831 28 H 0.165 0.835 29 H 0.153 0.847 30 H 0.147 0.853 31 H 0.151 0.849 32 H 0.148 0.852 33 H 0.026 0.974 34 H 0.028 0.972 35 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.698 -1.328 23.479 23.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.614 4.614 3 H 0.200 0.800 4 C -0.105 4.105 5 C -0.089 4.089 6 C -0.170 4.170 7 C 0.068 3.932 8 F -0.122 7.122 9 C -0.174 4.174 10 C -0.127 4.127 11 S 2.582 3.418 12 O -0.978 6.978 13 O -0.965 6.965 14 C -0.706 4.706 15 C -0.056 4.056 16 C -0.564 4.564 17 H 0.074 0.926 18 C -0.183 4.183 19 N -0.579 5.579 20 Si 0.744 3.256 21 H -0.186 1.186 22 H -0.199 1.199 23 H -0.179 1.179 24 H 0.122 0.878 25 H 0.111 0.889 26 H 0.093 0.907 27 H 0.187 0.813 28 H 0.182 0.818 29 H 0.171 0.829 30 H 0.165 0.835 31 H 0.169 0.831 32 H 0.166 0.834 33 H 0.044 0.956 34 H 0.046 0.954 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.254 -2.115 23.248 23.378 hybrid contribution 0.025 -0.105 -0.525 0.536 sum 1.279 -2.221 22.723 22.867 Atomic orbital electron populations 1.21924 0.87253 1.05020 1.06523 1.28941 1.08266 1.13814 1.10339 0.80022 1.19276 1.00696 0.94354 0.96192 1.21338 0.94116 1.01678 0.91797 1.21477 1.02517 0.92946 1.00075 1.18021 0.98259 0.92144 0.84742 1.91496 1.87497 1.82149 1.51051 1.21336 0.99537 1.02084 0.94440 1.21454 0.99270 0.94366 0.97644 1.08824 0.75666 0.77932 0.79404 1.93494 1.30001 1.87618 1.86676 1.93475 1.79284 1.37266 1.86448 1.30079 1.14252 1.15006 1.11303 1.19362 0.97187 0.96837 0.92194 1.21221 1.31938 1.12942 0.90309 0.92567 1.25810 0.96698 0.99347 0.96474 1.69996 1.46420 1.41096 1.00361 0.86089 0.80327 0.80498 0.78705 1.18567 1.19858 1.17870 0.87821 0.88851 0.90711 0.81337 0.81779 0.82890 0.83483 0.83123 0.83425 0.95604 0.95384 0.92142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 8.76 71.98 0.63 -1.59 16 2 C -0.50 -9.33 2.94 29.84 0.09 -9.24 16 3 H 0.18 2.03 7.87 -2.39 -0.02 2.01 16 4 C -0.10 -2.11 4.78 -19.86 -0.09 -2.20 16 5 C -0.07 -1.16 9.67 22.26 0.22 -0.95 16 6 C -0.15 -2.51 10.03 22.31 0.22 -2.29 16 7 C 0.09 1.76 7.30 22.38 0.16 1.92 16 8 F -0.14 -2.98 17.27 44.97 0.78 -2.20 16 9 C -0.16 -3.18 10.03 22.31 0.22 -2.96 16 10 C -0.11 -2.41 8.56 22.26 0.19 -2.22 16 11 S 2.39 73.20 4.08 -56.49 -0.23 72.97 16 12 O -0.98 -37.21 18.10 -127.37 -2.30 -39.51 16 13 O -0.97 -34.35 16.20 -127.37 -2.06 -36.42 16 14 C -0.58 -19.03 5.29 71.98 0.38 -18.65 16 15 C -0.02 -0.80 4.05 29.85 0.12 -0.68 16 16 C -0.53 -29.17 9.66 25.60 0.25 -28.92 16 17 H 0.06 3.27 7.99 -2.91 -0.02 3.25 16 18 C 0.02 0.88 5.47 84.65 0.46 1.35 16 19 N -0.94 -57.22 13.96 21.45 0.30 -56.92 16 20 Si 0.92 44.15 27.47 68.60 1.88 46.03 16 21 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16 22 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 23 H -0.25 -11.84 6.54 99.48 0.65 -11.19 16 24 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.09 1.18 6.56 -2.39 -0.02 1.16 16 26 H 0.07 1.21 7.30 -2.39 -0.02 1.19 16 27 H 0.17 1.68 7.94 -2.91 -0.02 1.66 16 28 H 0.16 1.82 8.06 -2.91 -0.02 1.79 16 29 H 0.15 2.57 8.06 -2.91 -0.02 2.55 16 30 H 0.15 3.35 6.26 -2.91 -0.02 3.33 16 31 H 0.15 4.19 6.87 -2.39 -0.02 4.18 16 32 H 0.15 4.15 8.14 -2.39 -0.02 4.13 16 33 H 0.03 1.23 7.20 -2.39 -0.02 1.21 16 34 H 0.03 1.30 7.57 -2.38 -0.02 1.28 16 35 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -75.76 310.64 2.25 -73.51 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: 1.04 Total: 8.98 kcal Atomic # 6 Polarization: -69.29 SS G_CDS: 2.85 Total: -66.44 kcal Atomic # 7 Polarization: -57.22 SS G_CDS: 0.30 Total: -56.92 kcal Atomic # 8 Polarization: -71.56 SS G_CDS: -4.37 Total: -75.93 kcal Atomic # 9 Polarization: -2.98 SS G_CDS: 0.78 Total: -2.20 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 1.88 Total: 46.03 kcal Atomic # 16 Polarization: 73.20 SS G_CDS: -0.23 Total: 72.97 kcal Total: -75.76 2.25 -73.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352381998.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.963 kcal (2) G-P(sol) polarization free energy of solvation -75.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds