Wall clock time and date at job start Tue Mar 31 2020 06:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99699 * 2 1 3 5 5 H 1.07995 * 119.99755 * 240.00383 * 4 2 1 6 6 C 1.37873 * 119.99729 * 60.00006 * 4 2 1 7 7 N 1.31516 * 119.99909 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99980 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46950 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47111 * 120.00368 * 8 6 4 11 11 H 1.48500 * 109.47074 * 240.00161 * 8 6 4 12 12 N 1.46506 * 109.47289 * 119.99984 * 2 1 3 13 13 C 1.34775 * 119.99693 * 275.00198 * 12 2 1 14 14 O 1.21540 * 120.00474 * 359.97438 * 13 12 2 15 15 C 1.47936 * 119.99546 * 179.97438 * 13 12 2 16 16 C 1.39464 * 119.65305 * 179.72531 * 15 13 12 17 17 C 1.38329 * 119.12988 * 179.75505 * 16 15 13 18 18 C 1.39227 * 118.44097 * 0.50675 * 17 16 15 19 19 O 1.35728 * 120.37565 * 179.75057 * 18 17 16 20 20 C 1.42903 * 116.99524 * 179.97438 * 19 18 17 21 21 F 1.39901 * 109.47214 * 300.00248 * 20 19 18 22 22 F 1.39901 * 109.47071 * 60.00380 * 20 19 18 23 23 C 1.39228 * 119.23875 * 359.73672 * 18 17 16 24 24 N 1.31374 * 120.80748 * 0.02562 * 23 18 17 25 25 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 26 26 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 27 27 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 28 28 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 29 29 H 0.97000 * 120.00117 * 94.99845 * 12 2 1 30 30 H 1.08000 * 120.44089 * 359.97438 * 16 15 13 31 31 H 1.08000 * 120.77551 * 180.22470 * 17 16 15 32 32 H 1.09001 * 109.46849 * 180.02562 * 20 19 18 33 33 H 1.08005 * 119.59741 * 179.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 3.1474 -2.2865 -3.6037 10 1 1.1678 -1.5867 -4.8165 11 1 3.1472 -0.1859 -4.8161 12 7 2.0184 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3571 14 8 1.8584 1.1611 2.4116 15 6 2.6397 -0.7158 3.5651 16 6 2.7755 -0.0117 4.7613 17 6 3.2323 -0.6758 5.8855 18 6 3.5501 -2.0267 5.7741 19 8 4.0065 -2.7154 6.8510 20 6 4.3101 -4.0981 6.6556 21 9 3.1586 -4.7738 6.2375 22 9 5.3047 -4.2238 5.6798 23 6 3.3942 -2.6630 4.5456 24 7 2.9533 -2.0044 3.4979 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 0.7089 1.1613 -3.4844 29 1 2.2491 -1.6318 1.1527 30 1 2.5241 1.0375 4.8102 31 1 3.3440 -0.1574 6.8263 32 1 4.6634 -4.5284 7.5926 33 1 3.6394 -3.7108 4.4526 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355307137.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:50 Heat of formation + Delta-G solvation = -169.249547 kcal Electronic energy + Delta-G solvation = -21997.547188 eV Core-core repulsion = 18079.331011 eV Total energy + Delta-G solvation = -3918.216177 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.092 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.35757 -48.35846 -41.93721 -40.44590 -38.99135 -36.79588 -34.46149 -33.59163 -32.22044 -30.59466 -27.47977 -27.33495 -25.64454 -24.59038 -23.06136 -21.41732 -20.29350 -19.70436 -19.49496 -18.93542 -17.94140 -17.53174 -17.08884 -16.72052 -16.39627 -16.15184 -15.76203 -15.63127 -15.06309 -15.01080 -14.69503 -14.46740 -14.44810 -14.29058 -14.07781 -13.99734 -13.65853 -13.02273 -12.93345 -12.88853 -12.76591 -12.30564 -12.14459 -11.30152 -11.13395 -11.05802 -10.69250 -10.61338 -10.03664 -9.72369 -8.19368 -6.36761 -0.54020 0.00762 1.38635 1.43888 1.44397 1.57336 1.67293 2.26875 2.47315 2.50985 2.68898 3.07557 3.11027 3.23639 3.52874 3.64250 3.71092 3.85064 4.05200 4.34828 4.56154 4.70005 4.84884 4.90320 5.04703 5.06791 5.38344 5.55767 5.58536 5.64533 5.84271 6.05969 6.47154 6.68889 6.89268 7.25565 7.41206 8.87459 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.024124 B = 0.003707 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.408332 B = 7551.915494 C = 8343.790966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.267 3.733 3 H 0.007 0.993 4 C -0.550 4.550 5 H 0.068 0.932 6 C 0.017 3.983 7 N -0.915 5.915 8 Si 0.974 3.026 9 H -0.264 1.264 10 H -0.276 1.276 11 H -0.280 1.280 12 N -0.686 5.686 13 C 0.553 3.447 14 O -0.584 6.584 15 C 0.036 3.964 16 C -0.075 4.075 17 C -0.085 4.085 18 C 0.079 3.921 19 O -0.306 6.306 20 C 0.402 3.598 21 F -0.208 7.208 22 F -0.209 7.209 23 C 0.029 3.971 24 N -0.442 5.442 25 H 0.072 0.928 26 H 0.015 0.985 27 H 0.037 0.963 28 H 0.267 0.733 29 H 0.407 0.593 30 H 0.165 0.835 31 H 0.194 0.806 32 H 0.247 0.753 33 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.638 -11.154 22.573 26.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.164 3.836 3 H 0.025 0.975 4 C -0.588 4.588 5 H 0.086 0.914 6 C -0.183 4.183 7 N -0.553 5.553 8 Si 0.799 3.201 9 H -0.188 1.188 10 H -0.201 1.201 11 H -0.206 1.206 12 N -0.333 5.333 13 C 0.339 3.661 14 O -0.465 6.465 15 C -0.101 4.101 16 C -0.096 4.096 17 C -0.110 4.110 18 C 0.032 3.968 19 O -0.222 6.222 20 C 0.313 3.687 21 F -0.190 7.190 22 F -0.190 7.190 23 C -0.133 4.133 24 N -0.154 5.154 25 H 0.091 0.909 26 H 0.034 0.966 27 H 0.057 0.943 28 H 0.076 0.924 29 H 0.243 0.757 30 H 0.183 0.817 31 H 0.211 0.789 32 H 0.263 0.737 33 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 7.266 -10.582 21.774 25.276 hybrid contribution 0.217 -0.328 -0.684 0.789 sum 7.483 -10.910 21.090 24.896 Atomic orbital electron populations 1.21900 0.97856 0.99490 0.99952 1.18508 0.91480 0.92157 0.81476 0.97532 1.21529 1.32798 1.13571 0.90885 0.91394 1.25778 0.94764 0.95574 1.02180 1.70045 1.36826 1.23763 1.24697 0.85263 0.78175 0.78450 0.78240 1.18794 1.20107 1.20592 1.46250 1.63130 1.14511 1.09402 1.18311 0.78186 0.86035 0.83613 1.90706 1.53646 1.16666 1.85501 1.21078 1.03481 0.90822 0.94761 1.22153 0.94568 1.02463 0.90435 1.21268 0.98352 0.90599 1.00823 1.20245 0.95770 0.93494 0.87260 1.86635 1.78805 1.23496 1.33263 1.24556 0.73929 0.77543 0.92645 1.93108 1.53061 1.80389 1.92452 1.93109 1.62466 1.95210 1.68249 1.23508 1.00654 1.01433 0.87743 1.67381 1.08059 1.08057 1.31895 0.90923 0.96569 0.94341 0.92362 0.75743 0.81740 0.78933 0.73734 0.80704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.06 9.26 71.98 0.67 -6.40 16 2 C 0.27 14.67 2.56 44.25 0.11 14.79 16 3 H 0.01 0.43 7.58 -2.39 -0.02 0.41 16 4 C -0.55 -30.71 8.73 25.60 0.22 -30.48 16 5 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 6 C 0.02 0.96 5.30 84.65 0.45 1.40 16 7 N -0.92 -53.34 11.32 21.45 0.24 -53.10 16 8 Si 0.97 43.30 29.54 68.60 2.03 45.32 16 9 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 10 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 11 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 12 N -0.69 -32.40 5.06 -448.88 -2.27 -34.67 16 13 C 0.55 24.80 7.77 86.81 0.67 25.47 16 14 O -0.58 -29.53 15.98 -3.84 -0.06 -29.59 16 15 C 0.04 1.26 6.74 41.87 0.28 1.54 16 16 C -0.08 -2.03 9.62 22.59 0.22 -1.81 16 17 C -0.08 -1.64 10.12 22.53 0.23 -1.41 16 18 C 0.08 1.62 6.51 22.75 0.15 1.77 16 19 O -0.31 -4.21 10.43 -90.51 -0.94 -5.15 16 20 C 0.40 3.54 5.98 113.37 0.68 4.22 16 21 F -0.21 -2.92 15.60 44.97 0.70 -2.22 16 22 F -0.21 -2.96 15.59 44.97 0.70 -2.26 16 23 C 0.03 0.74 9.44 85.00 0.80 1.54 16 24 N -0.44 -14.54 9.52 -184.53 -1.76 -16.30 16 25 H 0.07 4.13 6.07 -2.39 -0.01 4.12 16 26 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.04 1.89 8.14 -2.38 -0.02 1.87 16 28 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 29 H 0.41 17.79 7.86 -92.71 -0.73 17.06 16 30 H 0.17 4.20 7.63 -2.91 -0.02 4.18 16 31 H 0.19 2.12 8.06 -2.91 -0.02 2.09 16 32 H 0.25 -0.89 8.14 -2.39 -0.02 -0.91 16 33 H 0.18 3.96 5.11 -2.91 -0.01 3.94 16 Total: -1.00 -73.24 299.17 3.57 -69.67 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: 0.45 Total: 17.68 kcal Atomic # 6 Polarization: 6.14 SS G_CDS: 4.48 Total: 10.62 kcal Atomic # 7 Polarization: -100.28 SS G_CDS: -3.79 Total: -104.07 kcal Atomic # 8 Polarization: -33.74 SS G_CDS: -1.01 Total: -34.75 kcal Atomic # 9 Polarization: -5.88 SS G_CDS: 1.40 Total: -4.48 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.32 kcal Total: -73.24 3.57 -69.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355307137.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.582 kcal (2) G-P(sol) polarization free energy of solvation -73.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds