Wall clock time and date at job start Tue Mar 31 2020 06:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47516 * 2 1 4 4 C 1.50703 * 109.47302 * 119.99907 * 2 1 3 5 5 H 1.07998 * 120.00434 * 119.99776 * 4 2 1 6 6 C 1.37878 * 119.99838 * 299.99866 * 4 2 1 7 7 N 1.31513 * 119.99887 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99954 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47247 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.47093 * 120.00255 * 8 6 4 11 11 H 1.48502 * 109.47322 * 240.00203 * 8 6 4 12 12 N 1.46506 * 109.47262 * 239.99662 * 2 1 3 13 13 C 1.34777 * 119.99873 * 84.99703 * 12 2 1 14 14 O 1.21543 * 119.99669 * 0.28267 * 13 12 2 15 15 C 1.47926 * 119.99844 * 179.97438 * 13 12 2 16 16 C 1.39471 * 119.65376 * 180.02562 * 15 13 12 17 17 C 1.38318 * 119.12718 * 179.97438 * 16 15 13 18 18 C 1.39225 * 118.45348 * 0.02562 * 17 16 15 19 19 O 1.35720 * 120.38851 * 180.02562 * 18 17 16 20 20 C 1.42900 * 117.00137 * 180.02562 * 19 18 17 21 21 F 1.39899 * 109.47314 * 300.00126 * 20 19 18 22 22 F 1.39899 * 109.47029 * 60.00258 * 20 19 18 23 23 C 1.39243 * 119.22726 * 359.97438 * 18 17 16 24 24 N 1.31369 * 120.81176 * 359.74016 * 23 18 17 25 25 H 1.09002 * 109.47080 * 299.99761 * 1 2 3 26 26 H 1.08993 * 109.47207 * 60.00376 * 1 2 3 27 27 H 1.09002 * 109.46901 * 180.02562 * 1 2 3 28 28 H 0.97005 * 119.99741 * 179.97438 * 7 6 4 29 29 H 0.96999 * 120.00080 * 265.00307 * 12 2 1 30 30 H 1.07997 * 120.43526 * 359.96226 * 16 15 13 31 31 H 1.08003 * 120.77226 * 180.02562 * 17 16 15 32 32 H 1.08997 * 109.47316 * 180.02562 * 20 19 18 33 33 H 1.08000 * 119.59296 * 179.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4827 7 7 0.9436 0.8303 2.6033 8 14 2.3214 -1.1202 4.0080 9 1 3.1465 -2.2869 3.6039 10 1 3.1467 -0.1872 4.8165 11 1 1.1661 -1.5865 4.8161 12 7 2.0184 -0.6907 -1.1962 13 6 2.1470 -0.0184 -2.3572 14 8 1.8628 1.1621 -2.4105 15 6 2.6407 -0.7157 -3.5648 16 6 2.7716 -0.0129 -4.7623 17 6 3.2347 -0.6755 -5.8847 18 6 3.5532 -2.0262 -5.7733 19 8 4.0114 -2.7145 -6.8495 20 6 4.3155 -4.0971 -6.6540 21 9 5.3087 -4.2225 -5.6768 22 9 3.1638 -4.7735 -6.2378 23 6 3.3970 -2.6625 -4.5447 24 7 2.9599 -2.0029 -3.4960 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 0.7090 1.1615 3.4844 29 1 2.2490 -1.6319 -1.1526 30 1 2.5145 1.0349 -4.8127 31 1 3.3467 -0.1570 -6.8255 32 1 4.6712 -4.5268 -7.5903 33 1 3.6419 -3.7102 -4.4517 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355307139.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:53 Heat of formation + Delta-G solvation = -169.254562 kcal Electronic energy + Delta-G solvation = -21997.529575 eV Core-core repulsion = 18079.313180 eV Total energy + Delta-G solvation = -3918.216394 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.092 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.35825 -48.35888 -41.93717 -40.44595 -38.99198 -36.79580 -34.46164 -33.59245 -32.22024 -30.59480 -27.48047 -27.33503 -25.64449 -24.59049 -23.06153 -21.41693 -20.29422 -19.70441 -19.49532 -18.93580 -17.94153 -17.53206 -17.08860 -16.72058 -16.39518 -16.15269 -15.76180 -15.63211 -15.06363 -15.00993 -14.69506 -14.46727 -14.44806 -14.29203 -14.07774 -13.99666 -13.65890 -13.02225 -12.93386 -12.88912 -12.76635 -12.30475 -12.14483 -11.30141 -11.13408 -11.05866 -10.69246 -10.61321 -10.03615 -9.72335 -8.19397 -6.36754 -0.54074 0.00809 1.38585 1.43849 1.44400 1.57318 1.67274 2.26906 2.47330 2.50995 2.68896 3.07572 3.11008 3.23603 3.52900 3.64254 3.71102 3.85057 4.05194 4.34849 4.56191 4.70067 4.84881 4.90275 5.04690 5.06793 5.38352 5.55775 5.58560 5.64584 5.84276 6.05984 6.47155 6.68884 6.89266 7.25565 7.41204 8.87433 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.024121 B = 0.003707 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.521523 B = 7551.326106 C = 8343.649794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.267 3.733 3 H 0.007 0.993 4 C -0.550 4.550 5 H 0.068 0.932 6 C 0.017 3.983 7 N -0.915 5.915 8 Si 0.974 3.026 9 H -0.264 1.264 10 H -0.280 1.280 11 H -0.275 1.275 12 N -0.686 5.686 13 C 0.553 3.447 14 O -0.584 6.584 15 C 0.036 3.964 16 C -0.075 4.075 17 C -0.085 4.085 18 C 0.079 3.921 19 O -0.306 6.306 20 C 0.402 3.598 21 F -0.209 7.209 22 F -0.208 7.208 23 C 0.029 3.971 24 N -0.442 5.442 25 H 0.072 0.928 26 H 0.015 0.985 27 H 0.038 0.962 28 H 0.267 0.733 29 H 0.407 0.593 30 H 0.165 0.835 31 H 0.193 0.807 32 H 0.247 0.753 33 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.619 -11.162 -22.579 26.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.164 3.836 3 H 0.025 0.975 4 C -0.588 4.588 5 H 0.086 0.914 6 C -0.183 4.183 7 N -0.553 5.553 8 Si 0.799 3.201 9 H -0.188 1.188 10 H -0.206 1.206 11 H -0.201 1.201 12 N -0.333 5.333 13 C 0.339 3.661 14 O -0.465 6.465 15 C -0.101 4.101 16 C -0.096 4.096 17 C -0.110 4.110 18 C 0.032 3.968 19 O -0.222 6.222 20 C 0.313 3.687 21 F -0.190 7.190 22 F -0.190 7.190 23 C -0.133 4.133 24 N -0.154 5.154 25 H 0.091 0.909 26 H 0.034 0.966 27 H 0.057 0.943 28 H 0.076 0.924 29 H 0.243 0.757 30 H 0.183 0.817 31 H 0.211 0.789 32 H 0.263 0.737 33 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 7.256 -10.587 -21.777 25.278 hybrid contribution 0.214 -0.329 0.684 0.788 sum 7.470 -10.916 -21.093 24.897 Atomic orbital electron populations 1.21899 0.97853 0.99498 0.99955 1.18507 0.91480 0.92159 0.81476 0.97533 1.21529 1.32801 1.13572 0.90886 0.91397 1.25779 0.94764 0.95576 1.02181 1.70045 1.36818 1.23766 1.24697 0.85263 0.78173 0.78451 0.78238 1.18797 1.20601 1.20096 1.46250 1.63137 1.14526 1.09379 1.18310 0.78173 0.86047 0.83616 1.90706 1.53755 1.16560 1.85503 1.21078 1.03450 0.90872 0.94748 1.22151 0.94571 1.02443 0.90445 1.21264 0.98321 0.90617 1.00847 1.20246 0.95754 0.93497 0.87265 1.86631 1.78733 1.23518 1.33312 1.24554 0.73960 0.77532 0.92622 1.93108 1.62557 1.95210 1.68166 1.93107 1.53043 1.80358 1.92493 1.23510 1.00707 1.01417 0.87707 1.67382 1.08047 1.08035 1.31925 0.90928 0.96558 0.94335 0.92361 0.75744 0.81739 0.78936 0.73735 0.80706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.07 9.26 71.98 0.67 -6.40 16 2 C 0.27 14.67 2.56 44.24 0.11 14.79 16 3 H 0.01 0.43 7.57 -2.39 -0.02 0.41 16 4 C -0.55 -30.71 8.73 25.60 0.22 -30.49 16 5 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 6 C 0.02 0.95 5.30 84.66 0.45 1.40 16 7 N -0.92 -53.34 11.32 21.45 0.24 -53.10 16 8 Si 0.97 43.30 29.54 68.60 2.03 45.33 16 9 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 10 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 11 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 12 N -0.69 -32.40 5.06 -448.89 -2.27 -34.67 16 13 C 0.55 24.80 7.77 86.81 0.67 25.48 16 14 O -0.58 -29.54 15.97 -3.85 -0.06 -29.60 16 15 C 0.04 1.26 6.74 41.86 0.28 1.54 16 16 C -0.08 -2.03 9.62 22.59 0.22 -1.81 16 17 C -0.08 -1.64 10.12 22.53 0.23 -1.42 16 18 C 0.08 1.62 6.51 22.75 0.15 1.77 16 19 O -0.31 -4.21 10.43 -90.42 -0.94 -5.15 16 20 C 0.40 3.54 5.98 113.37 0.68 4.22 16 21 F -0.21 -2.96 15.59 44.97 0.70 -2.26 16 22 F -0.21 -2.92 15.60 44.97 0.70 -2.22 16 23 C 0.03 0.74 9.44 85.00 0.80 1.54 16 24 N -0.44 -14.54 9.52 -184.52 -1.76 -16.30 16 25 H 0.07 4.13 6.07 -2.39 -0.01 4.11 16 26 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.27 14.59 8.31 -92.70 -0.77 13.82 16 29 H 0.41 17.79 7.86 -92.71 -0.73 17.06 16 30 H 0.17 4.20 7.63 -2.91 -0.02 4.18 16 31 H 0.19 2.12 8.06 -2.91 -0.02 2.09 16 32 H 0.25 -0.89 8.14 -2.39 -0.02 -0.91 16 33 H 0.18 3.96 5.11 -2.91 -0.01 3.94 16 Total: -1.00 -73.25 299.17 3.57 -69.68 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: 0.45 Total: 17.68 kcal Atomic # 6 Polarization: 6.13 SS G_CDS: 4.48 Total: 10.61 kcal Atomic # 7 Polarization: -100.28 SS G_CDS: -3.79 Total: -104.07 kcal Atomic # 8 Polarization: -33.75 SS G_CDS: -1.00 Total: -34.75 kcal Atomic # 9 Polarization: -5.88 SS G_CDS: 1.40 Total: -4.48 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -73.25 3.57 -69.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355307139.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.576 kcal (2) G-P(sol) polarization free energy of solvation -73.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds