Wall clock time and date at job start Tue Mar 31 2020 06:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46508 * 119.99614 * 2 1 4 4 C 1.50707 * 109.46608 * 269.99910 * 3 2 1 5 5 H 1.07996 * 120.00392 * 0.02562 * 4 3 2 6 6 C 1.37882 * 119.99565 * 179.97438 * 4 3 2 7 7 N 1.31510 * 119.99858 * 0.02562 * 6 4 3 8 8 Si 1.86795 * 119.99924 * 179.97438 * 6 4 3 9 9 H 1.48507 * 109.47132 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47309 * 120.00322 * 8 6 4 11 11 H 1.48497 * 109.47262 * 240.00540 * 8 6 4 12 12 C 1.34775 * 120.00355 * 180.02562 * 2 1 3 13 13 O 1.21549 * 120.00084 * 182.06438 * 12 2 1 14 14 C 1.47922 * 119.99871 * 2.05679 * 12 2 1 15 15 C 1.39464 * 119.65686 * 172.78749 * 14 12 2 16 16 C 1.38322 * 119.13313 * 179.97438 * 15 14 12 17 17 C 1.39233 * 118.44607 * 359.97438 * 16 15 14 18 18 O 1.35725 * 120.38192 * 180.02562 * 17 16 15 19 19 C 1.42900 * 116.99868 * 179.97438 * 18 17 16 20 20 F 1.39902 * 109.47110 * 300.00082 * 19 18 17 21 21 F 1.39900 * 109.47226 * 59.99970 * 19 18 17 22 22 C 1.39240 * 119.23277 * 0.02562 * 17 16 15 23 23 N 1.31375 * 120.80625 * 359.97438 * 22 17 16 24 24 H 1.09005 * 109.46866 * 263.77041 * 1 2 3 25 25 H 1.08994 * 109.47615 * 23.76662 * 1 2 3 26 26 H 1.09003 * 109.46982 * 143.77406 * 1 2 3 27 27 H 1.08993 * 109.47066 * 29.99799 * 3 2 1 28 28 H 1.08992 * 109.46924 * 150.00522 * 3 2 1 29 29 H 0.97007 * 119.99864 * 179.97438 * 7 6 4 30 30 H 1.08001 * 120.43564 * 0.24712 * 15 14 12 31 31 H 1.07999 * 120.77801 * 180.02562 * 16 15 14 32 32 H 1.08994 * 109.47032 * 180.02562 * 19 18 17 33 33 H 1.07997 * 119.59309 * 179.97438 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7038 -1.4209 5 1 2.0973 1.0962 -2.2418 6 6 3.1258 2.8781 -1.6729 7 7 3.5531 3.6182 -0.6733 8 14 3.4377 3.4169 -3.4340 9 1 2.8607 2.4163 -4.3674 10 1 2.7996 4.7373 -3.6682 11 1 4.9003 3.5258 -3.6667 12 6 2.1389 -1.1671 -0.0005 13 8 3.3538 -1.1674 0.0374 14 6 1.4001 -2.4478 -0.0471 15 6 2.1011 -3.6438 -0.1995 16 6 1.3994 -4.8350 -0.2412 17 6 0.0123 -4.7920 -0.1279 18 8 -0.7151 -5.9373 -0.1632 19 6 -2.1330 -5.8092 -0.0400 20 9 -2.4422 -5.2051 1.1834 21 9 -2.6227 -5.0204 -1.0865 22 6 -0.6198 -3.5605 0.0220 23 7 0.0763 -2.4468 0.0578 24 1 -0.3633 -0.1115 1.0217 25 1 -0.3634 0.9404 -0.4141 26 1 -0.3633 -0.8290 -0.6073 27 1 1.6083 2.0284 0.5138 28 1 3.1498 1.1385 0.5137 29 1 4.0299 4.4442 -0.8506 30 1 3.1781 -3.6402 -0.2796 31 1 1.9153 -5.7766 -0.3580 32 1 -2.5921 -6.7968 -0.0834 33 1 -1.6954 -3.5203 0.1100 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355374704.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:26 Heat of formation + Delta-G solvation = -120.386535 kcal Electronic energy + Delta-G solvation = -22308.744811 eV Core-core repulsion = 18392.647493 eV Total energy + Delta-G solvation = -3916.097318 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.092 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.77582 -47.76417 -40.87911 -39.11059 -37.73306 -34.91603 -32.83669 -32.30542 -30.86606 -27.82957 -26.71318 -25.80627 -24.26161 -23.69864 -22.39122 -19.53654 -19.44191 -18.81871 -18.34173 -16.84052 -16.56098 -16.47493 -15.94002 -15.33445 -15.03166 -14.76352 -14.59442 -14.30273 -14.22726 -14.07056 -13.64541 -13.56784 -13.38163 -12.93156 -12.74950 -12.27292 -12.15550 -11.98749 -11.58990 -11.15582 -10.86154 -10.56443 -10.15164 -9.99367 -9.69588 -9.48504 -8.89573 -8.80750 -8.41338 -7.57067 -6.01943 -4.06718 0.64140 1.03765 2.06488 3.02556 3.09360 3.32169 3.39278 3.44056 3.79940 3.82906 4.04554 4.19470 4.25437 4.33774 4.46986 4.70784 4.87940 5.10087 5.32041 5.41047 5.56994 5.85147 6.08495 6.14490 6.30340 6.46484 6.74486 7.09360 7.45556 7.54003 7.67885 7.94767 8.24842 8.41709 8.88498 9.05267 9.58078 11.06139 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.029430 B = 0.003748 C = 0.003653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.177740 B = 7469.121503 C = 7663.913321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.575 5.575 3 C 0.241 3.759 4 C -0.526 4.526 5 H 0.058 0.942 6 C 0.061 3.939 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.554 3.446 13 O -0.538 6.538 14 C 0.072 3.928 15 C -0.081 4.081 16 C -0.097 4.097 17 C 0.059 3.941 18 O -0.315 6.315 19 C 0.410 3.590 20 F -0.196 7.196 21 F -0.196 7.196 22 C 0.030 3.970 23 N -0.412 5.412 24 H 0.044 0.956 25 H 0.062 0.938 26 H 0.092 0.908 27 H 0.036 0.964 28 H 0.046 0.954 29 H 0.263 0.737 30 H 0.160 0.840 31 H 0.151 0.849 32 H 0.185 0.815 33 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.751 -21.111 1.974 24.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.304 5.304 3 C 0.122 3.878 4 C -0.564 4.564 5 H 0.077 0.923 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.727 3.273 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.208 1.208 12 C 0.339 3.661 13 O -0.416 6.416 14 C -0.067 4.067 15 C -0.101 4.101 16 C -0.123 4.123 17 C 0.013 3.987 18 O -0.231 6.231 19 C 0.320 3.680 20 F -0.178 7.178 21 F -0.177 7.177 22 C -0.130 4.130 23 N -0.125 5.125 24 H 0.063 0.937 25 H 0.080 0.920 26 H 0.109 0.891 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.177 0.823 31 H 0.169 0.831 32 H 0.201 0.799 33 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -12.386 -20.236 2.125 23.821 hybrid contribution 0.189 -0.196 -1.029 1.064 sum -12.197 -20.432 1.096 23.821 Atomic orbital electron populations 1.22167 0.80005 1.02798 1.01227 1.48079 1.07290 1.07106 1.67968 1.19420 0.92715 0.77896 0.97733 1.21467 1.36452 1.06355 0.92174 0.92333 1.24935 0.95341 0.96325 0.97500 1.69948 1.38419 1.14322 1.30662 0.86424 0.78042 0.78318 0.84532 1.19800 1.20943 1.20845 1.17632 0.86659 0.82676 0.79175 1.90764 1.12653 1.86504 1.51643 1.21749 0.89471 0.95507 0.99949 1.22048 1.02603 0.90394 0.95079 1.20906 0.90058 0.99918 1.01391 1.20187 0.92520 0.85845 1.00138 1.86578 1.18022 1.30856 1.87662 1.23447 0.79687 0.92878 0.72023 1.93125 1.92590 1.86365 1.45710 1.93128 1.87672 1.78139 1.58807 1.23448 1.01217 0.86942 1.01366 1.68239 1.07419 1.27679 1.09169 0.93726 0.91973 0.89059 0.94597 0.93581 0.92756 0.82261 0.83125 0.79881 0.81861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.54 9.30 59.85 0.56 2.09 16 2 N -0.58 -13.31 2.86 -184.04 -0.53 -13.84 16 3 C 0.24 6.57 5.15 -5.19 -0.03 6.54 16 4 C -0.53 -15.32 9.39 -34.43 -0.32 -15.64 16 5 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 6 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 7 N -0.89 -26.93 13.29 55.43 0.74 -26.20 16 8 Si 0.90 22.19 29.54 -169.99 -5.02 17.17 16 9 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 11 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 12 C 0.55 12.48 7.65 -12.30 -0.09 12.38 16 13 O -0.54 -13.77 15.90 5.32 0.08 -13.68 16 14 C 0.07 1.28 6.62 -83.03 -0.55 0.73 16 15 C -0.08 -1.17 9.62 -39.09 -0.38 -1.54 16 16 C -0.10 -1.11 10.12 -39.18 -0.40 -1.51 16 17 C 0.06 0.69 6.51 -38.84 -0.25 0.43 16 18 O -0.31 -2.81 10.43 -18.88 -0.20 -3.01 16 19 C 0.41 2.54 5.98 101.05 0.60 3.15 16 20 F -0.20 -1.60 15.60 2.25 0.04 -1.56 16 21 F -0.20 -1.63 15.59 2.25 0.04 -1.59 16 22 C 0.03 0.40 9.44 -17.37 -0.16 0.24 16 23 N -0.41 -6.65 6.02 -9.68 -0.06 -6.71 16 24 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.06 1.16 8.02 -51.93 -0.42 0.75 16 26 H 0.09 1.62 5.26 -52.14 -0.27 1.34 16 27 H 0.04 0.98 8.07 -51.93 -0.42 0.56 16 28 H 0.05 1.38 7.39 -51.93 -0.38 1.00 16 29 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 30 H 0.16 2.20 7.65 -52.49 -0.40 1.80 16 31 H 0.15 1.25 8.06 -52.49 -0.42 0.82 16 32 H 0.18 0.16 8.14 -51.93 -0.42 -0.26 16 33 H 0.16 1.88 5.11 -52.49 -0.27 1.61 16 LS Contribution 297.74 15.07 4.49 4.49 Total: -1.00 -34.72 297.74 -4.52 -39.24 By element: Atomic # 1 Polarization: 0.14 SS G_CDS: -2.98 Total: -2.84 kcal Atomic # 6 Polarization: 9.66 SS G_CDS: -1.12 Total: 8.54 kcal Atomic # 7 Polarization: -46.90 SS G_CDS: 0.15 Total: -46.75 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: -0.11 Total: -16.69 kcal Atomic # 9 Polarization: -3.22 SS G_CDS: 0.07 Total: -3.15 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -34.72 -4.52 -39.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355374704.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.151 kcal (2) G-P(sol) polarization free energy of solvation -34.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds