Wall clock time and date at job start Tue Mar 31 2020 06:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46508 * 119.99614 * 2 1 4 4 C 1.50707 * 109.46608 * 269.99910 * 3 2 1 5 5 H 1.07996 * 120.00392 * 0.02562 * 4 3 2 6 6 C 1.37882 * 119.99565 * 179.97438 * 4 3 2 7 7 N 1.31510 * 119.99858 * 0.02562 * 6 4 3 8 8 Si 1.86795 * 119.99924 * 179.97438 * 6 4 3 9 9 H 1.48507 * 109.47132 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47309 * 120.00322 * 8 6 4 11 11 H 1.48497 * 109.47262 * 240.00540 * 8 6 4 12 12 C 1.34775 * 120.00355 * 180.02562 * 2 1 3 13 13 O 1.21549 * 120.00084 * 182.06438 * 12 2 1 14 14 C 1.47922 * 119.99871 * 2.05679 * 12 2 1 15 15 C 1.39464 * 119.65686 * 172.78749 * 14 12 2 16 16 C 1.38322 * 119.13313 * 179.97438 * 15 14 12 17 17 C 1.39233 * 118.44607 * 359.97438 * 16 15 14 18 18 O 1.35725 * 120.38192 * 180.02562 * 17 16 15 19 19 C 1.42900 * 116.99868 * 179.97438 * 18 17 16 20 20 F 1.39902 * 109.47110 * 300.00082 * 19 18 17 21 21 F 1.39900 * 109.47226 * 59.99970 * 19 18 17 22 22 C 1.39240 * 119.23277 * 0.02562 * 17 16 15 23 23 N 1.31375 * 120.80625 * 359.97438 * 22 17 16 24 24 H 1.09005 * 109.46866 * 263.77041 * 1 2 3 25 25 H 1.08994 * 109.47615 * 23.76662 * 1 2 3 26 26 H 1.09003 * 109.46982 * 143.77406 * 1 2 3 27 27 H 1.08993 * 109.47066 * 29.99799 * 3 2 1 28 28 H 1.08992 * 109.46924 * 150.00522 * 3 2 1 29 29 H 0.97007 * 119.99864 * 179.97438 * 7 6 4 30 30 H 1.08001 * 120.43564 * 0.24712 * 15 14 12 31 31 H 1.07999 * 120.77801 * 180.02562 * 16 15 14 32 32 H 1.08994 * 109.47032 * 180.02562 * 19 18 17 33 33 H 1.07997 * 119.59309 * 179.97438 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7038 -1.4209 5 1 2.0973 1.0962 -2.2418 6 6 3.1258 2.8781 -1.6729 7 7 3.5531 3.6182 -0.6733 8 14 3.4377 3.4169 -3.4340 9 1 2.8607 2.4163 -4.3674 10 1 2.7996 4.7373 -3.6682 11 1 4.9003 3.5258 -3.6667 12 6 2.1389 -1.1671 -0.0005 13 8 3.3538 -1.1674 0.0374 14 6 1.4001 -2.4478 -0.0471 15 6 2.1011 -3.6438 -0.1995 16 6 1.3994 -4.8350 -0.2412 17 6 0.0123 -4.7920 -0.1279 18 8 -0.7151 -5.9373 -0.1632 19 6 -2.1330 -5.8092 -0.0400 20 9 -2.4422 -5.2051 1.1834 21 9 -2.6227 -5.0204 -1.0865 22 6 -0.6198 -3.5605 0.0220 23 7 0.0763 -2.4468 0.0578 24 1 -0.3633 -0.1115 1.0217 25 1 -0.3634 0.9404 -0.4141 26 1 -0.3633 -0.8290 -0.6073 27 1 1.6083 2.0284 0.5138 28 1 3.1498 1.1385 0.5137 29 1 4.0299 4.4442 -0.8506 30 1 3.1781 -3.6402 -0.2796 31 1 1.9153 -5.7766 -0.3580 32 1 -2.5921 -6.7968 -0.0834 33 1 -1.6954 -3.5203 0.1100 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355374704.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:25 Heat of formation + Delta-G solvation = -144.780476 kcal Electronic energy + Delta-G solvation = -22309.802612 eV Core-core repulsion = 18392.647493 eV Total energy + Delta-G solvation = -3917.155118 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.092 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.33773 -48.33611 -42.01923 -40.45295 -38.93726 -36.76844 -34.80257 -33.60697 -32.07890 -29.76506 -27.67898 -27.26009 -25.77602 -24.89296 -23.89497 -21.08033 -20.25776 -19.53176 -18.91634 -18.72687 -18.34198 -17.61548 -17.05597 -16.65787 -16.56709 -16.16387 -15.83541 -15.70383 -15.03965 -14.87525 -14.68024 -14.61923 -14.44569 -14.17375 -14.12327 -13.83555 -13.73562 -13.46163 -13.13075 -12.94883 -12.69833 -12.48953 -12.24214 -11.71834 -11.23218 -11.02562 -10.66474 -10.29661 -9.92869 -9.44033 -8.24235 -6.39842 -0.52126 0.01014 1.36505 1.38680 1.40538 1.51090 1.69267 2.18180 2.39763 2.51925 2.67034 3.02293 3.05852 3.25886 3.51020 3.65828 3.66399 3.82092 4.00469 4.31846 4.55337 4.57616 4.77850 4.78946 4.98567 5.02847 5.17869 5.21711 5.53424 5.62762 5.79519 6.01670 6.44688 6.65763 6.69308 7.18539 7.34762 8.83477 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.029430 B = 0.003748 C = 0.003653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.177740 B = 7469.121503 C = 7663.913321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.588 5.588 3 C 0.256 3.744 4 C -0.546 4.546 5 H 0.051 0.949 6 C 0.009 3.991 7 N -0.927 5.927 8 Si 0.972 3.028 9 H -0.269 1.269 10 H -0.268 1.268 11 H -0.277 1.277 12 C 0.547 3.453 13 O -0.584 6.584 14 C 0.038 3.962 15 C -0.077 4.077 16 C -0.085 4.085 17 C 0.080 3.920 18 O -0.308 6.308 19 C 0.402 3.598 20 F -0.207 7.207 21 F -0.208 7.208 22 C 0.025 3.975 23 N -0.427 5.427 24 H 0.060 0.940 25 H 0.057 0.943 26 H 0.107 0.893 27 H 0.026 0.974 28 H 0.005 0.995 29 H 0.269 0.731 30 H 0.159 0.841 31 H 0.191 0.809 32 H 0.246 0.754 33 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.436 -23.737 0.807 27.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.317 5.317 3 C 0.135 3.865 4 C -0.584 4.584 5 H 0.070 0.930 6 C -0.190 4.190 7 N -0.566 5.566 8 Si 0.796 3.204 9 H -0.193 1.193 10 H -0.193 1.193 11 H -0.203 1.203 12 C 0.335 3.665 13 O -0.465 6.465 14 C -0.099 4.099 15 C -0.098 4.098 16 C -0.110 4.110 17 C 0.033 3.967 18 O -0.223 6.223 19 C 0.314 3.686 20 F -0.189 7.189 21 F -0.190 7.190 22 C -0.136 4.136 23 N -0.139 5.139 24 H 0.079 0.921 25 H 0.076 0.924 26 H 0.125 0.875 27 H 0.044 0.956 28 H 0.024 0.976 29 H 0.078 0.922 30 H 0.177 0.823 31 H 0.208 0.792 32 H 0.261 0.739 33 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -14.114 -22.879 0.968 26.900 hybrid contribution 0.580 0.441 -0.597 0.942 sum -13.533 -22.439 0.371 26.206 Atomic orbital electron populations 1.22310 0.77463 1.03213 1.02569 1.48095 1.08830 1.06180 1.68545 1.18922 0.91259 0.79755 0.96573 1.21677 1.37251 1.06884 0.92629 0.93043 1.25880 0.94652 0.96148 1.02307 1.70060 1.38706 1.14789 1.33075 0.85301 0.78061 0.78356 0.78669 1.19318 1.19258 1.20298 1.18351 0.86535 0.84041 0.77609 1.90707 1.14737 1.87522 1.53536 1.21013 0.90272 0.93852 1.04727 1.22087 1.02769 0.90382 0.94526 1.21225 0.90094 1.00106 0.99594 1.20243 0.92966 0.86259 0.97250 1.86634 1.19625 1.29191 1.86894 1.24525 0.78218 0.94944 0.70927 1.93108 1.92478 1.86831 1.46510 1.93109 1.87619 1.78826 1.59402 1.23716 1.01742 0.86917 1.01271 1.67955 1.06749 1.29547 1.09685 0.92131 0.92400 0.87510 0.95568 0.97647 0.92215 0.82290 0.79159 0.73884 0.80295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.33 9.30 127.77 1.19 4.51 16 2 N -0.59 -28.52 2.86 -854.47 -2.44 -30.96 16 3 C 0.26 14.75 5.15 85.63 0.44 15.19 16 4 C -0.55 -32.98 9.39 25.60 0.24 -32.74 16 5 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 6 C 0.01 0.55 5.46 84.66 0.46 1.01 16 7 N -0.93 -57.23 13.29 21.45 0.28 -56.95 16 8 Si 0.97 45.98 29.54 68.60 2.03 48.01 16 9 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 10 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 11 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 12 C 0.55 25.85 7.65 86.81 0.66 26.52 16 13 O -0.58 -31.75 15.90 -3.87 -0.06 -31.82 16 14 C 0.04 1.37 6.62 41.86 0.28 1.64 16 15 C -0.08 -2.16 9.62 22.59 0.22 -1.95 16 16 C -0.08 -1.68 10.12 22.53 0.23 -1.45 16 17 C 0.08 1.60 6.51 22.75 0.15 1.74 16 18 O -0.31 -4.12 10.43 -90.48 -0.94 -5.06 16 19 C 0.40 3.25 5.98 113.37 0.68 3.92 16 20 F -0.21 -2.68 15.60 44.97 0.70 -1.98 16 21 F -0.21 -2.74 15.59 44.97 0.70 -2.04 16 22 C 0.02 0.60 9.44 85.00 0.80 1.40 16 23 N -0.43 -13.46 6.02 -184.53 -1.11 -14.57 16 24 H 0.06 2.09 8.14 -2.38 -0.02 2.08 16 25 H 0.06 2.22 8.02 -2.39 -0.02 2.20 16 26 H 0.11 3.79 5.26 -2.81 -0.01 3.78 16 27 H 0.03 1.53 8.07 -2.39 -0.02 1.51 16 28 H 0.01 0.35 7.39 -2.39 -0.02 0.33 16 29 H 0.27 15.41 8.31 -92.70 -0.77 14.64 16 30 H 0.16 4.41 7.65 -2.91 -0.02 4.39 16 31 H 0.19 2.25 8.06 -2.91 -0.02 2.23 16 32 H 0.25 -1.00 8.14 -2.39 -0.02 -1.02 16 33 H 0.18 3.68 5.11 -2.91 -0.01 3.66 16 Total: -1.00 -79.39 297.74 5.66 -73.73 By element: Atomic # 1 Polarization: 0.66 SS G_CDS: 1.16 Total: 1.82 kcal Atomic # 6 Polarization: 14.46 SS G_CDS: 5.35 Total: 19.81 kcal Atomic # 7 Polarization: -99.21 SS G_CDS: -3.27 Total: -102.48 kcal Atomic # 8 Polarization: -35.87 SS G_CDS: -1.01 Total: -36.88 kcal Atomic # 9 Polarization: -5.42 SS G_CDS: 1.40 Total: -4.02 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -79.39 5.66 -73.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355374704.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.046 kcal (2) G-P(sol) polarization free energy of solvation -79.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds