Wall clock time and date at job start Tue Mar 31 2020 06:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34847 * 119.48259 * 2 1 4 4 C 1.41723 * 119.01575 * 179.97438 * 3 2 1 5 5 O 1.22172 * 120.92466 * 179.97438 * 4 3 2 6 6 C 1.42231 * 118.15304 * 0.25211 * 4 3 2 7 7 O 1.36086 * 120.56508 * 179.73071 * 6 4 3 8 8 C 1.42891 * 117.00452 * 179.97438 * 7 6 4 9 9 C 1.50696 * 109.47403 * 179.97438 * 8 7 6 10 10 C 1.38636 * 119.74767 * 269.73100 * 9 8 7 11 11 C 1.37628 * 120.24975 * 179.71997 * 10 9 8 12 12 C 1.40715 * 119.73843 * 0.56705 * 11 10 9 13 13 C 1.41402 * 120.24208 * 179.68121 * 12 11 10 14 14 H 1.07999 * 119.99560 * 24.40989 * 13 12 11 15 15 C 1.39944 * 119.99861 * 204.41316 * 13 12 11 16 16 N 1.30819 * 120.00454 * 17.85261 * 15 13 12 17 17 Si 1.86802 * 119.99755 * 197.85662 * 15 13 12 18 18 H 1.48500 * 109.47140 * 89.99849 * 17 15 13 19 19 H 1.48496 * 109.47377 * 209.99965 * 17 15 13 20 20 H 1.48503 * 109.47182 * 330.00129 * 17 15 13 21 21 C 1.40715 * 119.51602 * 359.70692 * 12 11 10 22 22 C 1.37621 * 119.74586 * 359.97438 * 21 12 11 23 23 C 1.35111 * 118.87864 * 359.48910 * 6 4 3 24 24 O 1.33772 * 119.48476 * 179.97438 * 2 1 3 25 25 H 1.08998 * 109.47384 * 89.99974 * 1 2 3 26 26 H 1.08995 * 109.47451 * 210.00144 * 1 2 3 27 27 H 1.09002 * 109.47340 * 329.99960 * 1 2 3 28 28 H 1.08000 * 120.48920 * 0.02562 * 3 2 1 29 29 H 1.09002 * 109.47037 * 299.99774 * 8 7 6 30 30 H 1.08999 * 109.47404 * 59.99602 * 8 7 6 31 31 H 1.08006 * 119.87787 * 359.97425 * 10 9 8 32 32 H 1.07996 * 120.13027 * 180.27373 * 11 10 9 33 33 H 0.96993 * 120.00390 * 179.97438 * 16 15 13 34 34 H 1.07998 * 120.13036 * 179.97438 * 21 12 11 35 35 H 1.07998 * 119.87757 * 180.02562 * 22 21 12 36 36 H 1.08001 * 119.57195 * 180.24549 * 23 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1707 1.1738 0.0000 4 6 3.5878 1.1623 0.0006 5 8 4.2242 2.2052 0.0001 6 6 4.2487 -0.0972 -0.0044 7 8 5.6078 -0.1655 -0.0096 8 6 6.1919 -1.4696 -0.0139 9 6 7.6939 -1.3473 -0.0200 10 6 8.3749 -1.2955 -1.2264 11 6 9.7461 -1.1782 -1.2440 12 6 10.4575 -1.1228 -0.0313 13 6 11.8670 -1.0090 -0.0370 14 1 12.3705 -0.5791 -0.8903 15 6 12.6093 -1.4535 1.0629 16 7 12.0703 -2.2742 1.9274 17 14 14.3699 -0.8747 1.2969 18 1 14.3785 0.3689 2.1084 19 1 15.1484 -1.9279 1.9968 20 1 14.9825 -0.6049 -0.0287 21 6 9.7563 -1.1820 1.1872 22 6 8.3845 -1.2927 1.1809 23 6 3.5043 -1.2247 0.0011 24 8 2.1654 -1.1645 0.0005 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.6302 2.1089 0.0004 29 1 5.8748 -2.0126 0.8765 30 1 5.8681 -2.0099 -0.9034 31 1 7.8271 -1.3433 -2.1560 32 1 10.2743 -1.1335 -2.1849 33 1 12.5849 -2.5825 2.6895 34 1 10.2924 -1.1407 2.1238 35 1 7.8441 -1.3379 2.1148 36 1 3.9945 -2.1870 0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358560844.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:56 Heat of formation + Delta-G solvation = -53.085329 kcal Electronic energy + Delta-G solvation = -20973.483824 eV Core-core repulsion = 17582.241684 eV Total energy + Delta-G solvation = -3391.242140 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.104 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.00180 -39.10901 -38.12960 -37.21918 -33.94292 -33.80678 -31.81361 -30.59662 -29.36265 -28.09159 -27.32840 -24.76155 -23.36996 -22.65380 -21.09563 -20.17569 -18.66631 -18.29399 -17.38587 -16.71515 -16.64731 -15.52161 -15.48114 -15.14153 -14.80019 -14.60206 -13.93515 -13.90856 -13.63083 -13.49408 -13.30748 -13.09459 -12.96099 -12.55178 -12.03465 -11.81093 -11.40643 -11.30461 -11.14889 -10.96730 -10.53022 -10.49972 -9.72886 -9.68071 -9.48639 -9.44710 -9.21319 -8.11183 -7.55579 -7.45347 -6.86561 -4.45658 0.80951 1.14272 2.23055 2.51723 3.00725 3.01868 3.05949 3.07146 3.44720 3.56264 3.86894 4.19538 4.38705 4.54648 4.60384 4.80404 4.95325 5.16790 5.29831 5.41321 5.46696 5.49194 5.61834 5.70072 5.91794 6.01564 6.24807 6.30594 6.87665 6.98188 7.05231 7.18329 7.26811 7.37822 7.52372 7.73945 7.87242 7.97008 8.00357 8.19989 8.54799 8.79556 8.87587 10.07626 Molecular weight = 286.10amu Principal moments of inertia in cm(-1) A = 0.042454 B = 0.002902 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.377724 B = 9645.069400 C = 9790.797836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.138 3.862 3 C -0.320 4.320 4 C 0.404 3.596 5 O -0.469 6.469 6 C -0.027 4.027 7 O -0.275 6.275 8 C 0.116 3.884 9 C -0.235 4.235 10 C -0.062 4.062 11 C -0.230 4.230 12 C 0.119 3.881 13 C -0.456 4.456 14 H 0.081 0.919 15 C 0.075 3.925 16 N -0.787 5.787 17 Si 0.911 3.089 18 H -0.266 1.266 19 H -0.277 1.277 20 H -0.261 1.261 21 C -0.170 4.170 22 C -0.074 4.074 23 C -0.047 4.047 24 O -0.204 6.204 25 H 0.095 0.905 26 H 0.087 0.913 27 H 0.098 0.902 28 H 0.159 0.841 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.283 0.717 34 H 0.120 0.880 35 H 0.089 0.911 36 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.825 -0.961 -1.267 18.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.089 3.911 3 C -0.340 4.340 4 C 0.291 3.709 5 O -0.353 6.353 6 C -0.076 4.076 7 O -0.188 6.188 8 C 0.042 3.958 9 C -0.236 4.236 10 C -0.081 4.081 11 C -0.250 4.250 12 C 0.116 3.884 13 C -0.485 4.485 14 H 0.099 0.901 15 C -0.144 4.144 16 N -0.411 5.411 17 Si 0.735 3.265 18 H -0.191 1.191 19 H -0.202 1.202 20 H -0.185 1.185 21 C -0.189 4.189 22 C -0.093 4.093 23 C -0.112 4.112 24 O -0.107 6.107 25 H 0.113 0.887 26 H 0.106 0.894 27 H 0.117 0.883 28 H 0.177 0.823 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.107 0.893 32 H 0.113 0.887 33 H 0.094 0.906 34 H 0.138 0.862 35 H 0.107 0.893 36 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -18.386 -0.652 -1.054 18.428 hybrid contribution 0.935 -0.032 0.181 0.953 sum -17.451 -0.684 -0.873 17.487 Atomic orbital electron populations 1.20931 0.85389 1.05208 1.04770 1.22544 0.94763 0.83334 0.90472 1.22521 0.95398 0.99030 1.17051 1.17231 0.88888 0.87704 0.77097 1.90843 1.69304 1.34303 1.40816 1.21272 0.86908 0.95731 1.03711 1.86609 1.12713 1.32719 1.86778 1.21616 0.92958 0.81640 0.99558 1.18523 0.89904 1.20992 0.94216 1.20368 0.94374 0.98234 0.95094 1.20950 0.93295 1.13557 0.97174 1.17696 0.93276 0.86438 0.90945 1.19694 0.91629 1.35073 1.02064 0.90112 1.25974 1.01117 0.92587 0.94681 1.69816 1.38742 1.21795 1.10764 0.86263 0.81157 0.79397 0.79672 1.19102 1.20214 1.18486 1.21297 0.92117 1.06715 0.98809 1.20520 0.94754 0.98965 0.95048 1.23732 0.79071 0.99998 1.08401 1.82820 1.19820 1.32028 1.75988 0.88654 0.89431 0.88332 0.82327 0.92637 0.92719 0.89308 0.88667 0.90645 0.86205 0.89328 0.78478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.46 10.19 36.01 0.37 -0.09 16 2 C 0.14 1.27 6.95 -35.51 -0.25 1.02 16 3 C -0.32 -3.77 9.61 -39.45 -0.38 -4.15 16 4 C 0.40 6.85 6.81 -36.72 -0.25 6.60 16 5 O -0.47 -9.96 17.75 -10.25 -0.18 -10.14 16 6 C -0.03 -0.45 6.72 -39.16 -0.26 -0.71 16 7 O -0.27 -5.47 9.99 -35.03 -0.35 -5.82 16 8 C 0.12 2.06 4.86 36.00 0.18 2.24 16 9 C -0.24 -5.25 5.53 -104.33 -0.58 -5.83 16 10 C -0.06 -1.42 9.67 -39.66 -0.38 -1.81 16 11 C -0.23 -5.72 9.80 -38.87 -0.38 -6.10 16 12 C 0.12 3.20 5.58 -106.82 -0.60 2.60 16 13 C -0.46 -12.04 9.05 -37.74 -0.34 -12.39 16 14 H 0.08 2.05 7.91 -52.49 -0.42 1.63 16 15 C 0.08 1.87 5.14 -17.34 -0.09 1.78 16 16 N -0.79 -20.01 10.95 55.55 0.61 -19.41 16 17 Si 0.91 18.48 29.60 -169.99 -5.03 13.45 16 18 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 19 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 20 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 21 C -0.17 -4.46 8.70 -38.87 -0.34 -4.80 16 22 C -0.07 -1.77 9.67 -39.66 -0.38 -2.15 16 23 C -0.05 -0.58 10.43 29.62 0.31 -0.27 16 24 O -0.20 -2.13 9.73 7.86 0.08 -2.06 16 25 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.10 0.28 8.06 -51.93 -0.42 -0.14 16 28 H 0.16 1.53 8.06 -52.49 -0.42 1.10 16 29 H 0.06 0.86 7.60 -51.93 -0.39 0.47 16 30 H 0.05 0.83 7.62 -51.93 -0.40 0.44 16 31 H 0.09 1.79 8.06 -52.48 -0.42 1.36 16 32 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 33 H 0.28 6.50 8.30 -40.82 -0.34 6.16 16 34 H 0.12 3.22 6.16 -52.49 -0.32 2.89 16 35 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 36 H 0.20 1.96 6.22 -52.49 -0.33 1.64 16 LS Contribution 318.42 15.07 4.80 4.80 Total: -1.00 -32.14 318.42 -7.40 -39.54 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -3.94 Total: 3.70 kcal Atomic # 6 Polarization: -20.68 SS G_CDS: -3.38 Total: -24.06 kcal Atomic # 7 Polarization: -20.01 SS G_CDS: 0.61 Total: -19.41 kcal Atomic # 8 Polarization: -17.56 SS G_CDS: -0.46 Total: -18.02 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.03 Total: 13.45 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.14 -7.40 -39.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358560844.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.549 kcal (2) G-P(sol) polarization free energy of solvation -32.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds