Wall clock time and date at job start Tue Mar 31 2020 06:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34847 * 119.48259 * 2 1 4 4 C 1.41723 * 119.01575 * 179.97438 * 3 2 1 5 5 O 1.22172 * 120.92466 * 179.97438 * 4 3 2 6 6 C 1.42231 * 118.15304 * 0.25211 * 4 3 2 7 7 O 1.36086 * 120.56508 * 179.73071 * 6 4 3 8 8 C 1.42891 * 117.00452 * 179.97438 * 7 6 4 9 9 C 1.50696 * 109.47403 * 179.97438 * 8 7 6 10 10 C 1.38636 * 119.74767 * 269.73100 * 9 8 7 11 11 C 1.37628 * 120.24975 * 179.71997 * 10 9 8 12 12 C 1.40715 * 119.73843 * 0.56705 * 11 10 9 13 13 C 1.41402 * 120.24208 * 179.68121 * 12 11 10 14 14 H 1.07999 * 119.99560 * 24.40989 * 13 12 11 15 15 C 1.39944 * 119.99861 * 204.41316 * 13 12 11 16 16 N 1.30819 * 120.00454 * 17.85261 * 15 13 12 17 17 Si 1.86802 * 119.99755 * 197.85662 * 15 13 12 18 18 H 1.48500 * 109.47140 * 89.99849 * 17 15 13 19 19 H 1.48496 * 109.47377 * 209.99965 * 17 15 13 20 20 H 1.48503 * 109.47182 * 330.00129 * 17 15 13 21 21 C 1.40715 * 119.51602 * 359.70692 * 12 11 10 22 22 C 1.37621 * 119.74586 * 359.97438 * 21 12 11 23 23 C 1.35111 * 118.87864 * 359.48910 * 6 4 3 24 24 O 1.33772 * 119.48476 * 179.97438 * 2 1 3 25 25 H 1.08998 * 109.47384 * 89.99974 * 1 2 3 26 26 H 1.08995 * 109.47451 * 210.00144 * 1 2 3 27 27 H 1.09002 * 109.47340 * 329.99960 * 1 2 3 28 28 H 1.08000 * 120.48920 * 0.02562 * 3 2 1 29 29 H 1.09002 * 109.47037 * 299.99774 * 8 7 6 30 30 H 1.08999 * 109.47404 * 59.99602 * 8 7 6 31 31 H 1.08006 * 119.87787 * 359.97425 * 10 9 8 32 32 H 1.07996 * 120.13027 * 180.27373 * 11 10 9 33 33 H 0.96993 * 120.00390 * 179.97438 * 16 15 13 34 34 H 1.07998 * 120.13036 * 179.97438 * 21 12 11 35 35 H 1.07998 * 119.87757 * 180.02562 * 22 21 12 36 36 H 1.08001 * 119.57195 * 180.24549 * 23 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1707 1.1738 0.0000 4 6 3.5878 1.1623 0.0006 5 8 4.2242 2.2052 0.0001 6 6 4.2487 -0.0972 -0.0044 7 8 5.6078 -0.1655 -0.0096 8 6 6.1919 -1.4696 -0.0139 9 6 7.6939 -1.3473 -0.0200 10 6 8.3749 -1.2955 -1.2264 11 6 9.7461 -1.1782 -1.2440 12 6 10.4575 -1.1228 -0.0313 13 6 11.8670 -1.0090 -0.0370 14 1 12.3705 -0.5791 -0.8903 15 6 12.6093 -1.4535 1.0629 16 7 12.0703 -2.2742 1.9274 17 14 14.3699 -0.8747 1.2969 18 1 14.3785 0.3689 2.1084 19 1 15.1484 -1.9279 1.9968 20 1 14.9825 -0.6049 -0.0287 21 6 9.7563 -1.1820 1.1872 22 6 8.3845 -1.2927 1.1809 23 6 3.5043 -1.2247 0.0011 24 8 2.1654 -1.1645 0.0005 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.6302 2.1089 0.0004 29 1 5.8748 -2.0126 0.8765 30 1 5.8681 -2.0099 -0.9034 31 1 7.8271 -1.3433 -2.1560 32 1 10.2743 -1.1335 -2.1849 33 1 12.5849 -2.5825 2.6895 34 1 10.2924 -1.1407 2.1238 35 1 7.8441 -1.3379 2.1148 36 1 3.9945 -2.1870 0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358560844.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:55 Heat of formation + Delta-G solvation = -72.006312 kcal Electronic energy + Delta-G solvation = -20974.304299 eV Core-core repulsion = 17582.241684 eV Total energy + Delta-G solvation = -3392.062615 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.104 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.02764 -40.40033 -39.58516 -38.83809 -35.75253 -34.63755 -33.12854 -32.19651 -31.25156 -29.05290 -28.74610 -26.24062 -24.71536 -23.66096 -22.98875 -21.92605 -19.82362 -19.41383 -19.29782 -17.74945 -17.65242 -17.26138 -16.58600 -16.49180 -16.28230 -15.84421 -15.70703 -15.36092 -14.81524 -14.63945 -14.47161 -14.16998 -13.89413 -13.80386 -13.56586 -13.31830 -13.05416 -12.86413 -12.70703 -12.45151 -12.13042 -12.10207 -11.51160 -11.33431 -11.08641 -10.89085 -10.36044 -9.46511 -9.36420 -9.30085 -8.71703 -6.42413 -0.19460 0.11564 0.73898 1.08148 1.33726 1.36154 1.45869 1.49594 2.16616 2.21903 2.33682 2.73318 3.31881 3.43794 3.55986 3.70714 4.03058 4.10339 4.23059 4.35212 4.39536 4.45672 4.52444 4.61712 4.71796 4.76373 4.96881 5.01491 5.09133 5.22708 5.27737 5.37176 5.62239 5.83927 6.02803 6.07105 6.10781 6.19341 6.29522 6.61618 6.71087 6.85764 6.94500 8.25569 Molecular weight = 286.10amu Principal moments of inertia in cm(-1) A = 0.042454 B = 0.002902 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.377724 B = 9645.069400 C = 9790.797836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.167 3.833 3 C -0.338 4.338 4 C 0.384 3.616 5 O -0.546 6.546 6 C -0.082 4.082 7 O -0.316 6.316 8 C 0.118 3.882 9 C -0.231 4.231 10 C -0.067 4.067 11 C -0.249 4.249 12 C 0.086 3.914 13 C -0.496 4.496 14 H 0.078 0.922 15 C 0.035 3.965 16 N -0.818 5.818 17 Si 0.985 3.015 18 H -0.264 1.264 19 H -0.263 1.263 20 H -0.257 1.257 21 C -0.196 4.196 22 C -0.083 4.083 23 C 0.009 3.991 24 O -0.190 6.190 25 H 0.119 0.881 26 H 0.107 0.893 27 H 0.118 0.882 28 H 0.176 0.824 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.119 0.881 32 H 0.101 0.899 33 H 0.291 0.709 34 H 0.104 0.896 35 H 0.107 0.893 36 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.052 -2.557 -1.470 22.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.117 3.883 3 C -0.358 4.358 4 C 0.278 3.722 5 O -0.437 6.437 6 C -0.129 4.129 7 O -0.231 6.231 8 C 0.045 3.955 9 C -0.232 4.232 10 C -0.085 4.085 11 C -0.268 4.268 12 C 0.084 3.916 13 C -0.525 4.525 14 H 0.096 0.904 15 C -0.181 4.181 16 N -0.443 5.443 17 Si 0.805 3.195 18 H -0.189 1.189 19 H -0.188 1.188 20 H -0.181 1.181 21 C -0.216 4.216 22 C -0.101 4.101 23 C -0.056 4.056 24 O -0.091 6.091 25 H 0.137 0.863 26 H 0.126 0.874 27 H 0.137 0.863 28 H 0.194 0.806 29 H 0.099 0.901 30 H 0.104 0.896 31 H 0.137 0.863 32 H 0.119 0.881 33 H 0.102 0.898 34 H 0.121 0.879 35 H 0.125 0.875 36 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -21.678 -2.288 -1.263 21.835 hybrid contribution 1.556 0.328 0.214 1.604 sum -20.122 -1.960 -1.048 20.245 Atomic orbital electron populations 1.21251 0.80907 1.07194 1.06745 1.23420 0.96783 0.81741 0.86336 1.22530 0.92957 1.01182 1.19136 1.18015 0.90977 0.87311 0.75914 1.90802 1.70832 1.36174 1.45862 1.21355 0.85921 0.96995 1.08644 1.86484 1.14939 1.33122 1.88554 1.21608 0.89827 0.81777 1.02327 1.19037 0.93005 1.17916 0.93259 1.20743 0.93821 0.97194 0.96787 1.21187 0.94553 1.14194 0.96911 1.18056 0.94102 0.87588 0.91896 1.19921 0.92095 1.37089 1.03353 0.90419 1.26822 1.05405 0.92046 0.93819 1.69856 1.40625 1.22456 1.11344 0.85160 0.75660 0.78989 0.79664 1.18862 1.18761 1.18094 1.21286 0.93331 1.08820 0.98139 1.20816 0.94100 0.98408 0.96786 1.24192 0.79487 0.99720 1.02214 1.82945 1.18863 1.32874 1.74447 0.86294 0.87446 0.86324 0.80619 0.90106 0.89581 0.86308 0.88064 0.89823 0.87851 0.87486 0.75361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.30 10.19 71.24 0.73 0.42 16 2 C 0.17 2.35 6.95 24.91 0.17 2.52 16 3 C -0.34 -7.40 9.61 22.35 0.21 -7.18 16 4 C 0.38 13.25 6.81 24.12 0.16 13.41 16 5 O -0.55 -24.81 17.75 8.48 0.15 -24.66 16 6 C -0.08 -2.60 6.72 22.54 0.15 -2.45 16 7 O -0.32 -12.47 9.99 -80.18 -0.80 -13.27 16 8 C 0.12 3.93 4.86 71.23 0.35 4.28 16 9 C -0.23 -10.21 5.53 -19.68 -0.11 -10.32 16 10 C -0.07 -3.07 9.67 22.22 0.21 -2.85 16 11 C -0.25 -12.75 9.80 22.73 0.22 -12.53 16 12 C 0.09 4.84 5.58 -21.29 -0.12 4.72 16 13 C -0.50 -27.48 9.05 23.46 0.21 -27.27 16 14 H 0.08 4.16 7.91 -2.91 -0.02 4.13 16 15 C 0.04 1.79 5.14 85.26 0.44 2.23 16 16 N -0.82 -43.06 10.95 21.83 0.24 -42.82 16 17 Si 0.99 38.73 29.60 68.60 2.03 40.76 16 18 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 19 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 20 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 21 C -0.20 -10.77 8.70 22.73 0.20 -10.58 16 22 C -0.08 -4.01 9.67 22.22 0.21 -3.79 16 23 C 0.01 0.19 10.43 67.10 0.70 0.89 16 24 O -0.19 -3.03 9.73 5.22 0.05 -2.98 16 25 H 0.12 -0.02 8.14 -2.39 -0.02 -0.04 16 26 H 0.11 0.02 8.14 -2.39 -0.02 0.00 16 27 H 0.12 0.01 8.06 -2.39 -0.02 -0.01 16 28 H 0.18 3.11 8.06 -2.91 -0.02 3.09 16 29 H 0.08 2.24 7.60 -2.39 -0.02 2.22 16 30 H 0.09 2.29 7.62 -2.39 -0.02 2.27 16 31 H 0.12 4.60 8.06 -2.91 -0.02 4.58 16 32 H 0.10 4.87 8.06 -2.91 -0.02 4.85 16 33 H 0.29 13.73 8.30 -92.71 -0.77 12.96 16 34 H 0.10 5.88 6.16 -2.91 -0.02 5.87 16 35 H 0.11 4.64 8.06 -2.91 -0.02 4.61 16 36 H 0.23 3.26 6.22 -2.91 -0.02 3.24 16 Total: -1.00 -77.80 318.42 6.52 -71.28 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: 1.10 Total: 20.20 kcal Atomic # 6 Polarization: -52.24 SS G_CDS: 3.75 Total: -48.50 kcal Atomic # 7 Polarization: -43.06 SS G_CDS: 0.24 Total: -42.82 kcal Atomic # 8 Polarization: -40.32 SS G_CDS: -0.60 Total: -40.92 kcal Atomic # 14 Polarization: 38.73 SS G_CDS: 2.03 Total: 40.76 kcal Total: -77.80 6.52 -71.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358560844.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.725 kcal (2) G-P(sol) polarization free energy of solvation -77.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds