Wall clock time and date at job start Tue Mar 31 2020 05:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00323 * 2 1 4 4 H 1.48506 * 109.46976 * 240.00075 * 3 2 1 5 5 H 1.48503 * 109.46910 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47365 * 119.99602 * 3 2 1 7 7 C 1.37883 * 120.00091 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99876 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99743 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.47202 * 180.02562 * 9 7 2 11 11 C 1.34774 * 120.00018 * 179.97438 * 10 9 7 12 12 O 1.21508 * 120.00133 * 359.97438 * 11 10 9 13 13 C 1.48180 * 119.99704 * 180.02562 * 11 10 9 14 14 C 1.39102 * 119.69704 * 179.97438 * 13 11 10 15 15 C 1.39240 * 118.98467 * 179.72098 * 14 13 11 16 16 O 1.35743 * 120.81649 * 180.25691 * 15 14 13 17 17 C 1.42900 * 117.00194 * 180.02562 * 16 15 14 18 18 C 1.52999 * 109.47015 * 179.97438 * 17 16 15 19 19 F 1.39905 * 109.47160 * 299.99800 * 18 17 16 20 20 F 1.39901 * 109.47354 * 60.00172 * 18 17 16 21 21 C 1.39213 * 118.36869 * 0.27855 * 15 14 13 22 22 C 1.38314 * 119.29120 * 359.97438 * 21 15 14 23 23 N 1.31609 * 120.96819 * 0.02562 * 22 21 15 24 24 H 0.97003 * 119.99568 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.46999 * 59.99973 * 9 7 2 26 26 H 1.09005 * 109.47342 * 300.00045 * 9 7 2 27 27 H 0.96996 * 119.99606 * 0.02562 * 10 9 7 28 28 H 1.08002 * 120.51064 * 0.02562 * 14 13 11 29 29 H 1.08995 * 109.47308 * 299.99901 * 17 16 15 30 30 H 1.09000 * 109.46848 * 59.99626 * 17 16 15 31 31 H 1.09005 * 109.47011 * 180.02562 * 18 17 16 32 32 H 1.08004 * 120.35270 * 179.97438 * 21 15 14 33 33 H 1.07994 * 119.51333 * 179.97438 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0017 10 7 2.2030 -3.6127 0.0027 11 6 1.7537 -4.8834 0.0044 12 8 0.5591 -5.1054 0.0055 13 6 2.7166 -6.0096 0.0059 14 6 2.2460 -7.3186 0.0082 15 6 3.1640 -8.3656 0.0037 16 8 2.7458 -9.6570 0.0005 17 6 3.7572 -10.6665 -0.0034 18 6 3.0992 -12.0478 -0.0060 19 9 2.3048 -12.1880 1.1370 20 9 2.3017 -12.1823 -1.1476 21 6 4.5211 -8.0555 0.0031 22 6 4.9121 -6.7288 0.0064 23 7 4.0210 -5.7602 0.0106 24 1 -0.4850 0.8401 -0.0004 25 1 0.6241 -2.5574 -0.8880 26 1 0.6247 -2.5563 0.8920 27 1 3.1566 -3.4355 0.0029 28 1 1.1849 -7.5199 0.0084 29 1 4.3764 -10.5570 -0.8937 30 1 4.3783 -10.5619 0.8862 31 1 3.8707 -12.8178 -0.0086 32 1 5.2608 -8.8425 0.0001 33 1 5.9639 -6.4841 0.0064 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427631106.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:52 Heat of formation + Delta-G solvation = -142.645886 kcal Electronic energy + Delta-G solvation = -21223.950768 eV Core-core repulsion = 17306.888213 eV Total energy + Delta-G solvation = -3917.062556 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.092 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.39407 -47.42494 -40.92226 -39.14862 -37.90779 -34.26686 -32.49609 -32.09200 -31.44131 -30.28008 -27.42746 -25.02182 -23.56407 -23.46164 -22.14931 -20.27796 -19.00231 -17.99773 -17.86522 -17.56136 -16.97708 -16.13430 -16.12096 -15.80179 -15.52462 -14.91068 -14.70546 -14.70394 -14.24978 -14.11607 -13.85806 -13.76896 -13.40833 -13.10151 -12.81976 -12.12290 -11.96995 -11.80949 -11.75814 -11.52852 -10.98195 -10.84981 -10.31758 -9.92138 -9.40381 -9.36189 -9.23380 -9.16505 -8.70954 -7.88426 -6.13682 -4.20295 0.62929 1.13627 2.28150 3.10243 3.17886 3.28918 3.33133 3.35066 3.56834 3.82701 3.83365 4.06590 4.22297 4.32262 4.32882 4.44975 4.61098 4.62137 4.73284 4.97075 5.22502 5.40952 5.50069 5.63517 5.81474 6.25928 6.76915 7.28683 7.38248 7.51396 7.64811 7.81202 7.98633 8.62062 8.76629 9.04348 9.45577 10.96588 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.042483 B = 0.002749 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.936522 B =10184.209843 C =10658.024320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.543 4.543 8 H 0.065 0.935 9 C 0.246 3.754 10 N -0.683 5.683 11 C 0.548 3.452 12 O -0.544 6.544 13 C 0.132 3.868 14 C -0.144 4.144 15 C 0.160 3.840 16 O -0.296 6.296 17 C 0.002 3.998 18 C 0.274 3.726 19 F -0.196 7.196 20 F -0.196 7.196 21 C -0.254 4.254 22 C 0.137 3.863 23 N -0.478 5.478 24 H 0.266 0.734 25 H 0.031 0.969 26 H 0.031 0.969 27 H 0.403 0.597 28 H 0.157 0.843 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.133 0.867 32 H 0.140 0.860 33 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.483 -23.982 -0.018 27.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.581 4.581 8 H 0.083 0.917 9 C 0.126 3.874 10 N -0.330 5.330 11 C 0.330 3.670 12 O -0.423 6.423 13 C -0.005 4.005 14 C -0.166 4.166 15 C 0.107 3.893 16 O -0.207 6.207 17 C -0.074 4.074 18 C 0.220 3.780 19 F -0.177 7.177 20 F -0.177 7.177 21 C -0.275 4.275 22 C -0.023 4.023 23 N -0.192 5.192 24 H 0.076 0.924 25 H 0.049 0.951 26 H 0.049 0.951 27 H 0.238 0.762 28 H 0.175 0.825 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.151 0.849 32 H 0.158 0.842 33 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 12.430 -23.181 -0.012 26.303 hybrid contribution 0.831 -0.043 -0.002 0.832 sum 13.261 -23.224 -0.014 26.743 Atomic orbital electron populations 1.69966 1.06104 1.27436 1.48868 1.24947 0.94923 0.99442 0.94675 0.86450 0.79388 0.82191 0.78736 1.20034 1.21102 1.20030 1.21189 0.93388 0.90276 1.53282 0.91729 1.19238 0.88303 0.81788 0.98074 1.46387 1.12245 1.05289 1.69080 1.17795 0.86916 0.83019 0.79224 1.90763 1.15259 1.84548 1.51721 1.21463 0.90699 0.92910 0.95435 1.21455 1.01854 0.89959 1.03322 1.19115 0.92637 0.83556 0.93959 1.86146 1.33969 1.12215 1.88377 1.24111 0.91726 0.86350 1.05218 1.22018 0.87056 0.96955 0.71933 1.93049 1.77087 1.96847 1.50756 1.93047 1.76917 1.96904 1.50863 1.22308 0.94706 0.99885 1.10593 1.22606 0.99583 0.87300 0.92790 1.67705 1.01525 1.37032 1.12977 0.92380 0.95078 0.95093 0.76248 0.82540 0.88481 0.88490 0.84947 0.84222 0.81795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.31 13.29 55.43 0.74 -25.58 16 2 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 3 Si 0.91 21.10 29.54 -169.99 -5.02 16.08 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.54 -15.03 9.28 -34.44 -0.32 -15.35 16 8 H 0.06 1.68 7.60 -52.49 -0.40 1.28 16 9 C 0.25 6.68 5.43 -5.19 -0.03 6.65 16 10 N -0.68 -15.48 5.54 -62.32 -0.35 -15.83 16 11 C 0.55 11.91 7.81 -12.18 -0.10 11.82 16 12 O -0.54 -13.49 16.32 5.36 0.09 -13.40 16 13 C 0.13 2.30 6.75 -83.04 -0.56 1.74 16 14 C -0.14 -2.23 9.60 -38.89 -0.37 -2.60 16 15 C 0.16 1.94 6.73 -38.85 -0.26 1.68 16 16 O -0.30 -3.27 10.04 -18.94 -0.19 -3.46 16 17 C 0.00 0.01 4.99 37.16 0.19 0.20 16 18 C 0.27 1.54 5.63 37.16 0.21 1.75 16 19 F -0.20 -1.76 17.28 2.25 0.04 -1.72 16 20 F -0.20 -1.76 17.28 2.25 0.04 -1.72 16 21 C -0.25 -2.38 9.12 -39.19 -0.36 -2.74 16 22 C 0.14 1.49 11.17 -17.62 -0.20 1.29 16 23 N -0.48 -7.27 9.54 -9.87 -0.09 -7.37 16 24 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 25 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.40 8.31 7.65 -40.82 -0.31 8.00 16 28 H 0.16 2.51 7.64 -52.49 -0.40 2.11 16 29 H 0.10 0.33 7.71 -51.93 -0.40 -0.07 16 30 H 0.10 0.33 7.71 -51.93 -0.40 -0.07 16 31 H 0.13 0.08 8.14 -51.93 -0.42 -0.34 16 32 H 0.14 0.72 6.45 -52.48 -0.34 0.38 16 33 H 0.16 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 307.63 15.07 4.64 4.64 Total: -1.00 -34.94 307.63 -5.08 -40.02 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -3.08 Total: 2.19 kcal Atomic # 6 Polarization: 8.04 SS G_CDS: -1.89 Total: 6.14 kcal Atomic # 7 Polarization: -49.07 SS G_CDS: 0.30 Total: -48.77 kcal Atomic # 8 Polarization: -16.75 SS G_CDS: -0.10 Total: -16.86 kcal Atomic # 9 Polarization: -3.52 SS G_CDS: 0.08 Total: -3.44 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -34.94 -5.08 -40.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427631106.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.624 kcal (2) G-P(sol) polarization free energy of solvation -34.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds