Wall clock time and date at job start Tue Mar 31 2020 05:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00323 * 2 1 4 4 H 1.48506 * 109.46976 * 240.00075 * 3 2 1 5 5 H 1.48503 * 109.46910 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47365 * 119.99602 * 3 2 1 7 7 C 1.37883 * 120.00091 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99876 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99743 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.47202 * 180.02562 * 9 7 2 11 11 C 1.34774 * 120.00018 * 179.97438 * 10 9 7 12 12 O 1.21508 * 120.00133 * 359.97438 * 11 10 9 13 13 C 1.48180 * 119.99704 * 180.02562 * 11 10 9 14 14 C 1.39102 * 119.69704 * 179.97438 * 13 11 10 15 15 C 1.39240 * 118.98467 * 179.72098 * 14 13 11 16 16 O 1.35743 * 120.81649 * 180.25691 * 15 14 13 17 17 C 1.42900 * 117.00194 * 180.02562 * 16 15 14 18 18 C 1.52999 * 109.47015 * 179.97438 * 17 16 15 19 19 F 1.39905 * 109.47160 * 299.99800 * 18 17 16 20 20 F 1.39901 * 109.47354 * 60.00172 * 18 17 16 21 21 C 1.39213 * 118.36869 * 0.27855 * 15 14 13 22 22 C 1.38314 * 119.29120 * 359.97438 * 21 15 14 23 23 N 1.31609 * 120.96819 * 0.02562 * 22 21 15 24 24 H 0.97003 * 119.99568 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.46999 * 59.99973 * 9 7 2 26 26 H 1.09005 * 109.47342 * 300.00045 * 9 7 2 27 27 H 0.96996 * 119.99606 * 0.02562 * 10 9 7 28 28 H 1.08002 * 120.51064 * 0.02562 * 14 13 11 29 29 H 1.08995 * 109.47308 * 299.99901 * 17 16 15 30 30 H 1.09000 * 109.46848 * 59.99626 * 17 16 15 31 31 H 1.09005 * 109.47011 * 180.02562 * 18 17 16 32 32 H 1.08004 * 120.35270 * 179.97438 * 21 15 14 33 33 H 1.07994 * 119.51333 * 179.97438 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0017 10 7 2.2030 -3.6127 0.0027 11 6 1.7537 -4.8834 0.0044 12 8 0.5591 -5.1054 0.0055 13 6 2.7166 -6.0096 0.0059 14 6 2.2460 -7.3186 0.0082 15 6 3.1640 -8.3656 0.0037 16 8 2.7458 -9.6570 0.0005 17 6 3.7572 -10.6665 -0.0034 18 6 3.0992 -12.0478 -0.0060 19 9 2.3048 -12.1880 1.1370 20 9 2.3017 -12.1823 -1.1476 21 6 4.5211 -8.0555 0.0031 22 6 4.9121 -6.7288 0.0064 23 7 4.0210 -5.7602 0.0106 24 1 -0.4850 0.8401 -0.0004 25 1 0.6241 -2.5574 -0.8880 26 1 0.6247 -2.5563 0.8920 27 1 3.1566 -3.4355 0.0029 28 1 1.1849 -7.5199 0.0084 29 1 4.3764 -10.5570 -0.8937 30 1 4.3783 -10.5619 0.8862 31 1 3.8707 -12.8178 -0.0086 32 1 5.2608 -8.8425 0.0001 33 1 5.9639 -6.4841 0.0064 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427631106.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:51 Heat of formation + Delta-G solvation = -169.834943 kcal Electronic energy + Delta-G solvation = -21225.129774 eV Core-core repulsion = 17306.888213 eV Total energy + Delta-G solvation = -3918.241562 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.092 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.91191 -47.97712 -41.94311 -40.50175 -39.13564 -36.27208 -34.43777 -33.02964 -32.57558 -30.91906 -29.43990 -26.26521 -24.71053 -24.47298 -23.53071 -21.73259 -20.25889 -18.91545 -18.50497 -18.40156 -18.03252 -17.52245 -17.15640 -16.84385 -16.71273 -16.35048 -16.30717 -16.21916 -15.34807 -14.90321 -14.74235 -14.66624 -14.62253 -14.34133 -14.03195 -13.86154 -13.56692 -12.96781 -12.69025 -12.65833 -12.65379 -12.24880 -11.99295 -11.53959 -11.34294 -10.80769 -10.67824 -10.42125 -10.08512 -9.88858 -8.29413 -6.46474 -0.48537 0.17821 1.43444 1.48498 1.56219 1.60123 1.69849 2.26705 2.45809 2.78434 2.80140 3.05246 3.18977 3.30209 3.49286 3.53394 3.78349 3.90800 3.96744 4.13292 4.24727 4.37815 4.48977 4.69528 4.84681 5.03953 5.18890 5.32981 5.41262 5.62655 5.80861 5.98908 6.58664 6.63180 6.90001 7.17821 7.32550 8.82773 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.042483 B = 0.002749 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.936522 B =10184.209843 C =10658.024320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.005 3.995 3 Si 0.988 3.012 4 H -0.262 1.262 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.559 4.559 8 H 0.083 0.917 9 C 0.263 3.737 10 N -0.682 5.682 11 C 0.546 3.454 12 O -0.588 6.588 13 C 0.107 3.893 14 C -0.162 4.162 15 C 0.164 3.836 16 O -0.322 6.322 17 C -0.012 4.012 18 C 0.262 3.738 19 F -0.221 7.221 20 F -0.221 7.221 21 C -0.218 4.218 22 C 0.138 3.862 23 N -0.499 5.499 24 H 0.270 0.730 25 H -0.006 1.006 26 H -0.006 1.006 27 H 0.414 0.586 28 H 0.132 0.868 29 H 0.130 0.870 30 H 0.129 0.871 31 H 0.193 0.807 32 H 0.198 0.802 33 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.140 -25.408 -0.023 31.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.195 4.195 3 Si 0.810 3.190 4 H -0.186 1.186 5 H -0.209 1.209 6 H -0.186 1.186 7 C -0.597 4.597 8 H 0.101 0.899 9 C 0.141 3.859 10 N -0.330 5.330 11 C 0.331 3.669 12 O -0.470 6.470 13 C -0.028 4.028 14 C -0.185 4.185 15 C 0.110 3.890 16 O -0.234 6.234 17 C -0.087 4.087 18 C 0.209 3.791 19 F -0.202 7.202 20 F -0.202 7.202 21 C -0.238 4.238 22 C -0.021 4.021 23 N -0.214 5.214 24 H 0.079 0.921 25 H 0.012 0.988 26 H 0.012 0.988 27 H 0.251 0.749 28 H 0.150 0.850 29 H 0.147 0.853 30 H 0.147 0.853 31 H 0.209 0.791 32 H 0.215 0.785 33 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 17.124 -24.651 -0.017 30.016 hybrid contribution -0.547 0.144 0.000 0.566 sum 16.577 -24.507 -0.017 29.587 Atomic orbital electron populations 1.70131 1.08258 1.28761 1.49690 1.26084 0.95829 1.03910 0.93650 0.85166 0.77906 0.76333 0.79564 1.18601 1.20861 1.18597 1.21549 0.94290 0.90421 1.53397 0.89947 1.18708 0.88603 0.83949 0.94652 1.46101 1.11968 1.04905 1.70003 1.18531 0.87396 0.83752 0.77229 1.90713 1.17645 1.85356 1.53269 1.20540 0.91061 0.91324 0.99923 1.21307 1.01665 0.90758 1.04740 1.19043 0.93106 0.83519 0.93289 1.86130 1.36912 1.12323 1.88046 1.24688 0.91253 0.84445 1.08294 1.22871 0.87287 0.98888 0.70067 1.92999 1.78079 1.97034 1.52133 1.92997 1.77915 1.97090 1.52235 1.22857 0.94120 1.00772 1.06099 1.23441 1.00629 0.87212 0.90844 1.67607 1.00661 1.39224 1.13942 0.92110 0.98775 0.98796 0.74903 0.84990 0.85263 0.85270 0.79086 0.78505 0.77203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.21 13.29 21.45 0.28 -56.92 16 2 C 0.00 0.28 5.46 84.66 0.46 0.75 16 3 Si 0.99 43.25 29.54 68.60 2.03 45.28 16 4 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 5 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 6 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 7 C -0.56 -31.74 9.28 25.60 0.24 -31.50 16 8 H 0.08 4.28 7.60 -2.91 -0.02 4.26 16 9 C 0.26 15.27 5.43 85.63 0.46 15.74 16 10 N -0.68 -32.72 5.54 -469.39 -2.60 -35.31 16 11 C 0.55 25.45 7.81 86.89 0.68 26.13 16 12 O -0.59 -31.90 16.32 -3.74 -0.06 -31.96 16 13 C 0.11 3.85 6.75 41.85 0.28 4.14 16 14 C -0.16 -5.18 9.60 22.72 0.22 -4.97 16 15 C 0.16 3.62 6.73 22.75 0.15 3.78 16 16 O -0.32 -6.42 10.04 -90.67 -0.91 -7.33 16 17 C -0.01 -0.08 4.99 71.98 0.36 0.28 16 18 C 0.26 2.10 5.63 71.98 0.41 2.50 16 19 F -0.22 -3.62 17.28 44.97 0.78 -2.84 16 20 F -0.22 -3.62 17.28 44.97 0.78 -2.84 16 21 C -0.22 -2.96 9.12 22.52 0.21 -2.75 16 22 C 0.14 2.40 11.17 84.74 0.95 3.35 16 23 N -0.50 -14.52 9.54 -185.15 -1.77 -16.29 16 24 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 25 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 26 H -0.01 -0.38 8.14 -2.38 -0.02 -0.40 16 27 H 0.41 17.61 7.65 -92.71 -0.71 16.90 16 28 H 0.13 4.71 7.64 -2.91 -0.02 4.69 16 29 H 0.13 0.07 7.71 -2.39 -0.02 0.06 16 30 H 0.13 0.07 7.71 -2.39 -0.02 0.06 16 31 H 0.19 -0.75 8.14 -2.38 -0.02 -0.77 16 32 H 0.20 0.40 6.45 -2.91 -0.02 0.38 16 33 H 0.21 1.67 8.06 -2.91 -0.02 1.65 16 Total: -1.00 -84.84 307.63 3.40 -81.44 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: 0.46 Total: 9.37 kcal Atomic # 6 Polarization: 13.01 SS G_CDS: 4.41 Total: 17.42 kcal Atomic # 7 Polarization: -104.44 SS G_CDS: -4.08 Total: -108.52 kcal Atomic # 8 Polarization: -38.33 SS G_CDS: -0.97 Total: -39.30 kcal Atomic # 9 Polarization: -7.24 SS G_CDS: 1.55 Total: -5.69 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -84.84 3.40 -81.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427631106.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.399 kcal (2) G-P(sol) polarization free energy of solvation -84.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds