Wall clock time and date at job start Tue Mar 31 2020 05:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30679 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48504 * 109.46881 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47057 * 299.99936 * 3 2 1 6 6 H 1.48495 * 109.47161 * 60.00233 * 3 2 1 7 7 C 1.40047 * 120.00057 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00275 * 179.97438 * 7 2 1 9 9 C 1.46372 * 119.99815 * 0.02562 * 7 2 1 10 10 O 1.21690 * 120.00307 * 359.97438 * 9 7 2 11 11 N 1.34783 * 119.99985 * 180.02562 * 9 7 2 12 12 C 1.46500 * 119.99877 * 179.97438 * 11 9 7 13 13 C 1.50701 * 109.46795 * 179.97438 * 12 11 9 14 14 C 1.38576 * 120.81144 * 259.99749 * 13 12 11 15 15 C 1.38215 * 119.22506 * 180.02562 * 14 13 12 16 16 N 1.31875 * 120.88410 * 359.97438 * 15 14 13 17 17 C 1.31806 * 121.78537 * 0.02562 * 16 15 14 18 18 C 1.38753 * 120.68012 * 359.97438 * 17 16 15 19 19 O 1.35912 * 120.47508 * 180.02562 * 18 17 16 20 20 C 1.42901 * 117.00171 * 359.97159 * 19 18 17 21 21 C 1.52996 * 109.47267 * 180.02562 * 20 19 18 22 22 F 1.39894 * 109.47208 * 300.00283 * 21 20 19 23 23 F 1.39902 * 109.47140 * 60.00378 * 21 20 19 24 24 H 0.96995 * 119.99633 * 359.97438 * 1 2 3 25 25 H 0.96998 * 119.99742 * 359.97438 * 11 9 7 26 26 H 1.08996 * 109.47264 * 60.00044 * 12 11 9 27 27 H 1.08996 * 109.47025 * 299.99744 * 12 11 9 28 28 H 1.07998 * 120.39172 * 0.04518 * 14 13 12 29 29 H 1.08000 * 119.55745 * 179.72267 * 15 14 13 30 30 H 1.08002 * 119.66472 * 179.97438 * 17 16 15 31 31 H 1.08998 * 109.47257 * 300.00490 * 20 19 18 32 32 H 1.09003 * 109.46779 * 60.00695 * 20 19 18 33 33 H 1.08996 * 109.47221 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.7008 1.3463 -0.0006 5 1 1.8820 2.3965 -1.2126 6 1 1.8821 2.3964 1.2125 7 6 2.0070 -1.2128 -0.0005 8 1 3.0870 -1.2129 -0.0010 9 6 1.2751 -2.4804 -0.0017 10 8 0.0583 -2.4805 -0.0017 11 7 1.9490 -3.6477 -0.0017 12 6 1.2165 -4.9164 -0.0022 13 6 2.1958 -6.0619 -0.0028 14 6 2.4999 -6.7352 -1.1751 15 6 3.4024 -7.7813 -1.1378 16 7 3.9736 -8.1425 -0.0054 17 6 3.7118 -7.5284 1.1311 18 6 2.8166 -6.4691 1.1735 19 8 2.5500 -5.8385 2.3476 20 6 3.2285 -6.3180 3.5102 21 6 2.8037 -5.4918 4.7258 22 9 3.1327 -4.1486 4.5147 23 9 1.4220 -5.6101 4.9103 24 1 -0.4849 0.8400 0.0004 25 1 2.9190 -3.6477 -0.0013 26 1 0.5902 -4.9740 -0.8924 27 1 0.5895 -4.9743 0.8875 28 1 2.0375 -6.4457 -2.1072 29 1 3.6400 -8.3127 -2.0476 30 1 4.1990 -7.8530 2.0387 31 1 2.9719 -7.3645 3.6750 32 1 4.3051 -6.2262 3.3663 33 1 3.3216 -5.8573 5.6125 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000442976816.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:30 Heat of formation + Delta-G solvation = -142.015097 kcal Electronic energy + Delta-G solvation = -22349.639824 eV Core-core repulsion = 18432.604621 eV Total energy + Delta-G solvation = -3917.035203 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.092 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.96327 -46.99581 -40.79616 -38.25511 -37.21684 -34.28673 -32.44902 -31.43140 -31.07184 -29.70169 -27.11521 -25.25846 -24.26589 -22.54314 -21.84615 -19.65926 -18.69474 -17.59336 -17.51457 -17.32749 -16.88008 -16.16336 -15.87688 -15.80378 -15.24593 -14.49045 -14.29774 -14.00813 -13.82462 -13.54841 -13.47800 -13.36957 -13.32262 -12.52407 -12.38088 -12.15014 -11.87358 -11.70475 -11.30829 -11.21715 -11.10821 -10.85821 -10.43343 -10.16821 -9.60419 -9.52499 -8.81582 -8.54462 -7.55763 -7.47041 -6.14168 -4.58914 1.05332 1.19624 2.68575 3.16323 3.24110 3.28921 3.56064 3.69890 3.92628 4.15602 4.18611 4.33696 4.51187 4.58858 4.63734 4.79127 4.82392 4.93427 5.08990 5.17749 5.37639 5.48960 5.67229 5.86299 5.99788 6.33028 6.50674 6.55159 7.04118 7.48150 7.84992 7.95450 8.10691 8.37264 9.07186 9.56616 10.64406 10.82855 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.013678 B = 0.005441 C = 0.004348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.665206 B = 5144.423366 C = 6438.517389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.087 3.913 3 Si 0.907 3.093 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.542 4.542 8 H 0.067 0.933 9 C 0.557 3.443 10 O -0.580 6.580 11 N -0.758 5.758 12 C 0.177 3.823 13 C -0.072 4.072 14 C -0.118 4.118 15 C 0.059 3.941 16 N -0.454 5.454 17 C 0.011 3.989 18 C 0.090 3.910 19 O -0.281 6.281 20 C 0.001 3.999 21 C 0.274 3.726 22 F -0.190 7.190 23 F -0.196 7.196 24 H 0.267 0.733 25 H 0.379 0.621 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.145 0.855 29 H 0.158 0.842 30 H 0.155 0.845 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.365 -15.083 5.849 18.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.579 4.579 8 H 0.085 0.915 9 C 0.361 3.639 10 O -0.463 6.463 11 N -0.414 5.414 12 C 0.052 3.948 13 C -0.081 4.081 14 C -0.138 4.138 15 C -0.099 4.099 16 N -0.164 5.164 17 C -0.147 4.147 18 C 0.042 3.958 19 O -0.193 6.193 20 C -0.076 4.076 21 C 0.221 3.779 22 F -0.172 7.172 23 F -0.178 7.178 24 H 0.078 0.922 25 H 0.210 0.790 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.163 0.837 29 H 0.175 0.825 30 H 0.172 0.828 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 8.683 -15.453 5.911 18.685 hybrid contribution 0.445 1.342 0.102 1.417 sum 9.128 -14.111 6.014 17.850 Atomic orbital electron populations 1.70037 1.07034 1.27089 1.35562 1.25702 0.94610 1.00246 0.92634 0.86326 0.80494 0.81808 0.78180 1.18808 1.20179 1.20146 1.20883 0.93558 0.89253 1.54208 0.91463 1.18229 0.87188 0.82241 0.76221 1.90600 1.14075 1.86638 1.54948 1.46115 1.08413 1.03964 1.82862 1.19658 0.91657 0.81534 1.01911 1.20156 0.98831 0.98776 0.90346 1.22077 0.97874 0.95653 0.98207 1.22617 0.95052 0.96070 0.96136 1.67466 1.22912 1.27599 0.98425 1.22786 0.99195 0.95097 0.97649 1.19943 0.96101 0.93332 0.86446 1.86319 1.63916 1.55591 1.13450 1.24082 0.99107 0.99429 0.84992 1.21946 0.78635 0.79691 0.97676 1.93089 1.92020 1.35833 1.96216 1.93045 1.32646 1.95774 1.96292 0.92200 0.78965 0.92077 0.91718 0.83723 0.82456 0.82819 0.88946 0.88761 0.85366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.59 11.83 55.55 0.66 -22.93 16 2 C 0.09 2.51 5.50 -17.36 -0.10 2.41 16 3 Si 0.91 20.65 29.56 -169.99 -5.02 15.62 16 4 H -0.26 -5.80 7.11 56.52 0.40 -5.40 16 5 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 6 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.54 -15.78 9.54 -35.63 -0.34 -16.12 16 8 H 0.07 1.81 7.85 -52.49 -0.41 1.40 16 9 C 0.56 16.37 7.75 -12.99 -0.10 16.26 16 10 O -0.58 -19.29 15.02 5.20 0.08 -19.22 16 11 N -0.76 -17.72 5.54 -62.90 -0.35 -18.07 16 12 C 0.18 3.57 5.54 -5.19 -0.03 3.54 16 13 C -0.07 -1.14 5.30 -104.18 -0.55 -1.69 16 14 C -0.12 -1.54 9.78 -39.47 -0.39 -1.92 16 15 C 0.06 0.70 11.18 -17.54 -0.20 0.50 16 16 N -0.45 -5.92 10.35 -13.12 -0.14 -6.06 16 17 C 0.01 0.13 10.22 -17.37 -0.18 -0.05 16 18 C 0.09 1.31 6.68 -39.07 -0.26 1.05 16 19 O -0.28 -4.27 9.39 -19.46 -0.18 -4.45 16 20 C 0.00 0.01 4.97 37.16 0.18 0.19 16 21 C 0.27 2.81 5.63 37.16 0.21 3.01 16 22 F -0.19 -2.82 17.28 2.25 0.04 -2.78 16 23 F -0.20 -2.71 17.28 2.25 0.04 -2.67 16 24 H 0.27 7.41 8.29 -40.82 -0.34 7.07 16 25 H 0.38 8.10 8.44 -40.82 -0.34 7.75 16 26 H 0.06 1.24 8.04 -51.93 -0.42 0.82 16 27 H 0.06 1.44 7.93 -51.93 -0.41 1.03 16 28 H 0.15 1.64 8.06 -52.49 -0.42 1.22 16 29 H 0.16 1.38 8.06 -52.49 -0.42 0.95 16 30 H 0.15 1.37 6.32 -52.49 -0.33 1.04 16 31 H 0.09 0.61 7.68 -51.93 -0.40 0.21 16 32 H 0.09 0.67 7.68 -51.93 -0.40 0.27 16 33 H 0.13 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 306.16 15.07 4.61 4.61 Total: -1.00 -38.57 306.16 -5.13 -43.70 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -3.12 Total: 5.05 kcal Atomic # 6 Polarization: 8.93 SS G_CDS: -1.74 Total: 7.19 kcal Atomic # 7 Polarization: -47.23 SS G_CDS: 0.17 Total: -47.06 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: -0.10 Total: -23.67 kcal Atomic # 9 Polarization: -5.52 SS G_CDS: 0.08 Total: -5.44 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -38.57 -5.13 -43.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000442976816.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.316 kcal (2) G-P(sol) polarization free energy of solvation -38.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds