Wall clock time and date at job start Tue Mar 31 2020 05:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30679 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48504 * 109.46881 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47057 * 299.99936 * 3 2 1 6 6 H 1.48495 * 109.47161 * 60.00233 * 3 2 1 7 7 C 1.40047 * 120.00057 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00275 * 179.97438 * 7 2 1 9 9 C 1.46372 * 119.99815 * 0.02562 * 7 2 1 10 10 O 1.21690 * 120.00307 * 359.97438 * 9 7 2 11 11 N 1.34783 * 119.99985 * 180.02562 * 9 7 2 12 12 C 1.46500 * 119.99877 * 179.97438 * 11 9 7 13 13 C 1.50701 * 109.46795 * 179.97438 * 12 11 9 14 14 C 1.38576 * 120.81144 * 259.99749 * 13 12 11 15 15 C 1.38215 * 119.22506 * 180.02562 * 14 13 12 16 16 N 1.31875 * 120.88410 * 359.97438 * 15 14 13 17 17 C 1.31806 * 121.78537 * 0.02562 * 16 15 14 18 18 C 1.38753 * 120.68012 * 359.97438 * 17 16 15 19 19 O 1.35912 * 120.47508 * 180.02562 * 18 17 16 20 20 C 1.42901 * 117.00171 * 359.97159 * 19 18 17 21 21 C 1.52996 * 109.47267 * 180.02562 * 20 19 18 22 22 F 1.39894 * 109.47208 * 300.00283 * 21 20 19 23 23 F 1.39902 * 109.47140 * 60.00378 * 21 20 19 24 24 H 0.96995 * 119.99633 * 359.97438 * 1 2 3 25 25 H 0.96998 * 119.99742 * 359.97438 * 11 9 7 26 26 H 1.08996 * 109.47264 * 60.00044 * 12 11 9 27 27 H 1.08996 * 109.47025 * 299.99744 * 12 11 9 28 28 H 1.07998 * 120.39172 * 0.04518 * 14 13 12 29 29 H 1.08000 * 119.55745 * 179.72267 * 15 14 13 30 30 H 1.08002 * 119.66472 * 179.97438 * 17 16 15 31 31 H 1.08998 * 109.47257 * 300.00490 * 20 19 18 32 32 H 1.09003 * 109.46779 * 60.00695 * 20 19 18 33 33 H 1.08996 * 109.47221 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.7008 1.3463 -0.0006 5 1 1.8820 2.3965 -1.2126 6 1 1.8821 2.3964 1.2125 7 6 2.0070 -1.2128 -0.0005 8 1 3.0870 -1.2129 -0.0010 9 6 1.2751 -2.4804 -0.0017 10 8 0.0583 -2.4805 -0.0017 11 7 1.9490 -3.6477 -0.0017 12 6 1.2165 -4.9164 -0.0022 13 6 2.1958 -6.0619 -0.0028 14 6 2.4999 -6.7352 -1.1751 15 6 3.4024 -7.7813 -1.1378 16 7 3.9736 -8.1425 -0.0054 17 6 3.7118 -7.5284 1.1311 18 6 2.8166 -6.4691 1.1735 19 8 2.5500 -5.8385 2.3476 20 6 3.2285 -6.3180 3.5102 21 6 2.8037 -5.4918 4.7258 22 9 3.1327 -4.1486 4.5147 23 9 1.4220 -5.6101 4.9103 24 1 -0.4849 0.8400 0.0004 25 1 2.9190 -3.6477 -0.0013 26 1 0.5902 -4.9740 -0.8924 27 1 0.5895 -4.9743 0.8875 28 1 2.0375 -6.4457 -2.1072 29 1 3.6400 -8.3127 -2.0476 30 1 4.1990 -7.8530 2.0387 31 1 2.9719 -7.3645 3.6750 32 1 4.3051 -6.2262 3.3663 33 1 3.3216 -5.8573 5.6125 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000442976816.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:29 Heat of formation + Delta-G solvation = -172.307086 kcal Electronic energy + Delta-G solvation = -22350.953383 eV Core-core repulsion = 18432.604621 eV Total energy + Delta-G solvation = -3918.348762 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.092 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.90466 -47.97964 -41.83366 -39.39846 -39.18623 -35.95919 -34.59799 -33.07063 -31.95893 -30.66580 -29.03713 -27.01016 -25.19765 -23.53935 -23.00410 -21.76175 -19.72292 -19.33551 -18.49051 -18.34932 -17.87993 -17.56999 -17.19066 -16.91062 -16.76035 -16.06778 -15.86238 -15.37580 -15.21984 -14.89813 -14.53575 -14.51312 -14.35388 -14.33398 -13.71541 -13.46074 -13.26607 -13.08185 -12.89628 -12.68401 -12.64609 -12.51668 -12.02151 -11.99472 -10.96328 -10.75190 -10.55339 -9.90202 -9.55358 -9.48360 -8.31039 -6.87966 0.02540 0.13819 1.38315 1.39162 1.57133 1.84953 2.23719 2.44865 2.67328 2.81151 3.23073 3.28749 3.41231 3.47858 3.53519 3.58925 3.75093 3.85541 3.94179 4.14079 4.31632 4.36645 4.51355 4.54544 4.72665 4.82188 5.19211 5.29785 5.50511 5.83517 6.09135 6.13640 6.22772 6.84335 6.87357 7.48047 8.45477 8.65051 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.013678 B = 0.005441 C = 0.004348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.665206 B = 5144.423366 C = 6438.517389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.028 3.972 3 Si 1.000 3.000 4 H -0.248 1.248 5 H -0.265 1.265 6 H -0.268 1.268 7 C -0.571 4.571 8 H 0.085 0.915 9 C 0.539 3.461 10 O -0.632 6.632 11 N -0.744 5.744 12 C 0.186 3.814 13 C -0.100 4.100 14 C -0.114 4.114 15 C 0.065 3.935 16 N -0.461 5.461 17 C 0.022 3.978 18 C 0.083 3.917 19 O -0.323 6.323 20 C -0.010 4.010 21 C 0.258 3.742 22 F -0.223 7.223 23 F -0.223 7.223 24 H 0.275 0.725 25 H 0.390 0.610 26 H 0.052 0.948 27 H 0.033 0.967 28 H 0.157 0.843 29 H 0.193 0.807 30 H 0.192 0.808 31 H 0.127 0.873 32 H 0.124 0.876 33 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.398 -16.060 6.053 21.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.187 4.187 3 Si 0.819 3.181 4 H -0.171 1.171 5 H -0.189 1.189 6 H -0.193 1.193 7 C -0.607 4.607 8 H 0.103 0.897 9 C 0.344 3.656 10 O -0.519 6.519 11 N -0.398 5.398 12 C 0.062 3.938 13 C -0.109 4.109 14 C -0.134 4.134 15 C -0.092 4.092 16 N -0.170 5.170 17 C -0.136 4.136 18 C 0.035 3.965 19 O -0.235 6.235 20 C -0.085 4.085 21 C 0.205 3.795 22 F -0.205 7.205 23 F -0.205 7.205 24 H 0.085 0.915 25 H 0.223 0.777 26 H 0.071 0.929 27 H 0.051 0.949 28 H 0.175 0.825 29 H 0.210 0.790 30 H 0.209 0.791 31 H 0.145 0.855 32 H 0.142 0.858 33 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 11.763 -16.489 6.115 21.158 hybrid contribution -0.484 1.508 0.079 1.586 sum 11.280 -14.980 6.193 19.749 Atomic orbital electron populations 1.70200 1.09571 1.28949 1.36439 1.27008 0.95566 1.05008 0.91136 0.84951 0.79271 0.75228 0.78689 1.17051 1.18922 1.19312 1.21411 0.94586 0.90008 1.54735 0.89712 1.18636 0.86829 0.84178 0.75979 1.90548 1.16177 1.87842 1.57379 1.45749 1.08853 1.04028 1.81157 1.19487 0.92447 0.81961 0.99884 1.19889 0.99764 0.98574 0.92681 1.22239 0.97932 0.95588 0.97666 1.23121 0.93724 0.95233 0.97126 1.67589 1.22956 1.27592 0.98895 1.23273 0.97956 0.93583 0.98795 1.20049 0.96471 0.93996 0.85939 1.86273 1.65367 1.56940 1.14915 1.24547 1.00410 1.00903 0.82652 1.22934 0.77630 0.78194 1.00732 1.93015 1.92160 1.38693 1.96592 1.92985 1.35173 1.95766 1.96535 0.91494 0.77678 0.92937 0.94903 0.82521 0.79017 0.79149 0.85540 0.85824 0.79008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -52.10 11.83 21.84 0.26 -51.84 16 2 C 0.03 1.60 5.50 85.30 0.47 2.07 16 3 Si 1.00 42.39 29.56 68.60 2.03 44.41 16 4 H -0.25 -9.72 7.11 99.48 0.71 -9.01 16 5 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 6 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 7 C -0.57 -33.93 9.54 24.83 0.24 -33.70 16 8 H 0.08 4.56 7.85 -2.91 -0.02 4.54 16 9 C 0.54 33.13 7.75 86.36 0.67 33.80 16 10 O -0.63 -44.51 15.02 -4.32 -0.06 -44.58 16 11 N -0.74 -36.26 5.54 -471.14 -2.61 -38.87 16 12 C 0.19 7.96 5.54 85.63 0.47 8.43 16 13 C -0.10 -3.19 5.30 -19.58 -0.10 -3.29 16 14 C -0.11 -2.84 9.78 22.34 0.22 -2.62 16 15 C 0.06 1.35 11.18 84.68 0.95 2.29 16 16 N -0.46 -10.46 10.35 -195.44 -2.02 -12.48 16 17 C 0.02 0.47 10.22 84.82 0.87 1.34 16 18 C 0.08 2.35 6.68 22.60 0.15 2.50 16 19 O -0.32 -9.72 9.39 -92.56 -0.87 -10.59 16 20 C -0.01 -0.17 4.97 71.98 0.36 0.19 16 21 C 0.26 4.92 5.63 71.98 0.41 5.32 16 22 F -0.22 -6.64 17.28 44.97 0.78 -5.86 16 23 F -0.22 -6.21 17.28 44.97 0.78 -5.43 16 24 H 0.28 15.68 8.29 -92.71 -0.77 14.91 16 25 H 0.39 17.08 8.44 -92.71 -0.78 16.29 16 26 H 0.05 2.28 8.04 -2.39 -0.02 2.26 16 27 H 0.03 1.59 7.93 -2.39 -0.02 1.57 16 28 H 0.16 3.39 8.06 -2.91 -0.02 3.37 16 29 H 0.19 2.58 8.06 -2.91 -0.02 2.55 16 30 H 0.19 2.52 6.32 -2.91 -0.02 2.50 16 31 H 0.13 1.22 7.68 -2.39 -0.02 1.20 16 32 H 0.12 1.31 7.68 -2.39 -0.02 1.29 16 33 H 0.19 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -89.88 306.16 3.35 -86.54 By element: Atomic # 1 Polarization: 21.97 SS G_CDS: 0.39 Total: 22.36 kcal Atomic # 6 Polarization: 11.65 SS G_CDS: 4.69 Total: 16.34 kcal Atomic # 7 Polarization: -98.81 SS G_CDS: -4.38 Total: -103.19 kcal Atomic # 8 Polarization: -54.24 SS G_CDS: -0.93 Total: -55.17 kcal Atomic # 9 Polarization: -12.85 SS G_CDS: 1.55 Total: -11.29 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.41 kcal Total: -89.88 3.35 -86.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000442976816.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.771 kcal (2) G-P(sol) polarization free energy of solvation -89.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds