Wall clock time and date at job start Tue Mar 31 2020 06:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 113.99919 * 2 1 4 4 C 1.53001 * 109.46910 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.47422 * 51.46296 * 4 3 2 6 6 C 1.36873 * 120.00185 * 180.15748 * 5 4 3 7 7 H 1.07997 * 120.00008 * 59.39640 * 6 5 4 8 8 C 1.39006 * 119.99939 * 239.38781 * 6 5 4 9 9 N 1.31394 * 120.00060 * 42.26826 * 8 6 5 10 10 Si 1.86799 * 120.00146 * 222.26610 * 8 6 5 11 11 H 1.48504 * 109.47050 * 65.00266 * 10 8 6 12 12 H 1.48501 * 109.47244 * 185.00141 * 10 8 6 13 13 H 1.48500 * 109.46891 * 305.00175 * 10 8 6 14 14 C 1.34780 * 119.99510 * 0.15945 * 5 4 3 15 15 O 1.21739 * 119.99626 * 218.67589 * 14 5 4 16 16 C 1.46531 * 120.00276 * 38.67481 * 14 5 4 17 17 C 1.38027 * 126.23135 * 206.74588 * 16 14 5 18 18 C 1.39856 * 107.09725 * 179.97438 * 17 16 14 19 19 Cl 1.73592 * 126.06676 * 179.97438 * 18 17 16 20 20 C 1.35562 * 107.86397 * 359.77241 * 18 17 16 21 21 N 1.35682 * 108.85908 * 0.36920 * 20 18 17 22 22 C 1.46501 * 125.67792 * 179.89087 * 21 20 18 23 23 H 1.08997 * 109.47063 * 59.99997 * 1 2 3 24 24 H 1.09002 * 109.47478 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.47164 * 300.00540 * 1 2 3 26 26 H 1.08997 * 109.47472 * 59.99730 * 3 2 1 27 27 H 1.08998 * 109.46921 * 299.99490 * 3 2 1 28 28 H 1.09001 * 109.47367 * 291.46355 * 4 3 2 29 29 H 1.09005 * 109.46879 * 171.46056 * 4 3 2 30 30 H 0.97005 * 120.00575 * 184.97965 * 9 8 6 31 31 H 1.08001 * 126.45139 * 0.02562 * 17 16 14 32 32 H 1.07999 * 125.56724 * 180.22758 * 20 18 17 33 33 H 1.09000 * 109.47139 * 222.68022 * 22 21 20 34 34 H 1.08996 * 109.47320 * 102.67780 * 22 21 20 35 35 H 1.08996 * 109.47003 * 342.67546 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9548 0.2880 -1.0794 6 6 5.2838 0.0238 -1.2724 7 1 5.8657 -0.4249 -0.4809 8 6 5.8846 0.3329 -2.4872 9 7 5.6114 1.4708 -3.0846 10 14 7.0806 -0.8695 -3.2705 11 1 6.3600 -2.1142 -3.6404 12 1 7.6704 -0.2583 -4.4886 13 1 8.1619 -1.1917 -2.3050 14 6 3.0318 -0.2767 -1.8830 15 8 3.1698 -1.4282 -2.2532 16 6 1.8622 0.4954 -2.3111 17 6 0.6305 -0.0179 -2.6640 18 6 -0.1852 1.0666 -3.0022 19 17 -1.8395 0.9785 -3.5210 20 6 0.5438 2.1992 -2.8488 21 7 1.7916 1.8647 -2.4339 22 6 2.8806 2.8047 -2.1567 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.6886 1.8464 0.8899 27 1 1.6886 1.8463 -0.8900 28 1 3.8676 0.7812 0.9572 29 1 3.9779 2.1690 -0.1520 30 1 5.9734 1.6555 -3.9654 31 1 0.3493 -1.0606 -2.6758 32 1 0.1900 3.2034 -3.0296 33 1 3.8110 2.4147 -2.5694 34 1 2.9859 2.9312 -1.0793 35 1 2.6550 3.7674 -2.6154 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457179571.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:26 Heat of formation + Delta-G solvation = 33.652051 kcal Electronic energy + Delta-G solvation = -22586.197270 eV Core-core repulsion = 19228.576247 eV Total energy + Delta-G solvation = -3357.621023 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.087 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.38364 -39.86446 -38.39233 -37.33322 -36.67461 -34.49663 -33.51833 -30.58632 -30.19148 -27.94409 -26.75630 -26.45109 -24.42604 -22.71457 -21.48048 -20.41336 -19.04838 -18.68178 -18.12546 -17.45327 -16.74211 -16.45328 -15.93027 -15.62171 -15.40767 -15.10369 -14.99726 -14.64501 -14.22583 -13.99772 -13.82924 -13.67688 -13.42588 -13.20414 -12.77927 -12.73097 -12.56647 -12.44801 -12.20198 -12.10323 -11.70842 -11.68922 -10.72335 -10.58986 -10.28540 -9.38543 -9.23097 -8.97127 -8.38503 -6.16055 0.62392 1.20390 1.31193 1.40205 1.51794 1.57041 2.03789 2.25407 2.51397 2.74224 2.95574 3.26752 3.94252 4.03789 4.12981 4.17360 4.34497 4.39836 4.41565 4.53266 4.63407 4.67293 4.85050 4.88664 4.94992 4.99337 5.06471 5.18692 5.52558 5.57156 5.87350 6.19788 6.25619 6.36039 6.90103 7.11972 7.37243 8.03654 8.42413 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.022413 B = 0.006925 C = 0.006500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.960944 B = 4042.590140 C = 4306.932834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.401 6.401 3 C -0.022 4.022 4 C 0.106 3.894 5 N -0.484 5.484 6 C -0.369 4.369 7 H 0.055 0.945 8 C 0.055 3.945 9 N -0.828 5.828 10 Si 0.927 3.073 11 H -0.298 1.298 12 H -0.269 1.269 13 H -0.258 1.258 14 C 0.593 3.407 15 O -0.601 6.601 16 C -0.009 4.009 17 C -0.132 4.132 18 C -0.132 4.132 19 Cl -0.044 7.044 20 C 0.022 3.978 21 N -0.404 5.404 22 C 0.014 3.986 23 H 0.064 0.936 24 H 0.078 0.922 25 H 0.049 0.951 26 H 0.066 0.934 27 H 0.117 0.883 28 H 0.048 0.952 29 H 0.086 0.914 30 H 0.276 0.724 31 H 0.132 0.868 32 H 0.214 0.786 33 H 0.119 0.881 34 H 0.096 0.904 35 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.004 9.002 1.874 14.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.319 6.319 3 C -0.098 4.098 4 C -0.016 4.016 5 N -0.208 5.208 6 C -0.494 4.494 7 H 0.073 0.927 8 C -0.156 4.156 9 N -0.460 5.460 10 Si 0.752 3.248 11 H -0.225 1.225 12 H -0.194 1.194 13 H -0.182 1.182 14 C 0.386 3.614 15 O -0.483 6.483 16 C -0.122 4.122 17 C -0.158 4.158 18 C -0.165 4.165 19 Cl -0.016 7.016 20 C -0.113 4.113 21 N -0.081 5.081 22 C -0.125 4.125 23 H 0.083 0.917 24 H 0.096 0.904 25 H 0.068 0.932 26 H 0.084 0.916 27 H 0.133 0.867 28 H 0.066 0.934 29 H 0.104 0.896 30 H 0.086 0.914 31 H 0.150 0.850 32 H 0.231 0.769 33 H 0.137 0.863 34 H 0.114 0.886 35 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -10.514 8.658 1.634 13.718 hybrid contribution 0.429 -0.821 -0.277 0.967 sum -10.085 7.838 1.358 12.844 Atomic orbital electron populations 1.23103 0.80306 1.02921 1.01378 1.87964 1.21100 1.28241 1.94639 1.24601 0.93185 0.86842 1.05205 1.22023 0.92617 0.95459 0.91544 1.42669 1.04128 1.43691 1.30335 1.18583 0.84979 1.43799 1.02076 0.92719 1.25813 0.97693 0.94088 0.98024 1.69824 1.43520 1.17586 1.15075 0.86046 0.79284 0.80654 0.78828 1.22485 1.19420 1.18206 1.17298 0.79955 0.84536 0.79632 1.90589 1.77176 1.18833 1.61720 1.20464 0.97200 0.83060 1.11447 1.20902 0.91251 0.98693 1.04958 1.19751 0.88170 0.93835 1.14758 1.98289 1.15012 1.98568 1.89707 1.22223 0.83333 1.00339 1.05380 1.44496 1.11272 1.05446 1.46927 1.23554 0.91100 0.92895 1.04941 0.91733 0.90372 0.93222 0.91553 0.86728 0.93371 0.89605 0.91382 0.84987 0.76935 0.86324 0.88573 0.86853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.57 9.55 113.37 1.08 1.65 16 2 O -0.40 -15.69 7.48 -148.98 -1.11 -16.81 16 3 C -0.02 -0.75 4.42 71.98 0.32 -0.44 16 4 C 0.11 4.22 5.45 86.38 0.47 4.69 16 5 N -0.48 -24.31 2.11 -640.20 -1.35 -25.66 16 6 C -0.37 -20.20 8.68 84.09 0.73 -19.47 16 7 H 0.06 3.10 8.06 -2.91 -0.02 3.08 16 8 C 0.05 2.87 5.02 84.94 0.43 3.29 16 9 N -0.83 -41.12 11.24 21.67 0.24 -40.88 16 10 Si 0.93 43.49 29.69 68.60 2.04 45.53 16 11 H -0.30 -15.50 7.11 99.48 0.71 -14.80 16 12 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 13 H -0.26 -11.48 7.11 99.48 0.71 -10.78 16 14 C 0.59 31.13 5.00 86.40 0.43 31.56 16 15 O -0.60 -37.03 17.35 -4.47 -0.08 -37.11 16 16 C -0.01 -0.37 3.53 40.34 0.14 -0.22 16 17 C -0.13 -4.99 7.60 22.61 0.17 -4.82 16 18 C -0.13 -3.93 5.02 22.04 0.11 -3.82 16 19 Cl -0.04 -1.10 29.30 -2.72 -0.08 -1.18 16 20 C 0.02 0.57 10.92 83.48 0.91 1.49 16 21 N -0.40 -13.42 1.63 -534.10 -0.87 -14.29 16 22 C 0.01 0.42 8.63 127.77 1.10 1.53 16 23 H 0.06 1.92 4.26 -2.39 -0.01 1.91 16 24 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 25 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 26 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.12 3.70 2.02 -102.67 -0.21 3.49 16 28 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.09 3.12 6.04 -2.38 -0.01 3.11 16 30 H 0.28 12.99 8.32 -92.70 -0.77 12.22 16 31 H 0.13 5.24 8.06 -2.91 -0.02 5.21 16 32 H 0.21 3.67 8.06 -2.91 -0.02 3.65 16 33 H 0.12 4.76 4.92 -2.39 -0.01 4.74 16 34 H 0.10 2.75 3.89 -2.39 -0.01 2.74 16 35 H 0.11 2.51 8.09 -2.39 -0.02 2.49 16 Total: -1.00 -67.23 288.23 5.62 -61.62 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: 0.93 Total: 13.34 kcal Atomic # 6 Polarization: 9.54 SS G_CDS: 5.90 Total: 15.44 kcal Atomic # 7 Polarization: -78.85 SS G_CDS: -1.98 Total: -80.83 kcal Atomic # 8 Polarization: -52.72 SS G_CDS: -1.19 Total: -53.91 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.04 Total: 45.53 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -0.08 Total: -1.18 kcal Total: -67.23 5.62 -61.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457179571.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.268 kcal (2) G-P(sol) polarization free energy of solvation -67.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds