Wall clock time and date at job start Tue Mar 31 2020 06:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36088 * 116.99773 * 2 1 4 4 C 1.38823 * 119.99938 * 90.00102 * 3 2 1 5 5 F 1.35099 * 120.00113 * 359.97438 * 4 3 2 6 6 C 1.38319 * 119.99921 * 180.02562 * 4 3 2 7 7 C 1.38830 * 119.99941 * 0.02562 * 6 4 3 8 8 N 1.40129 * 119.99685 * 179.97438 * 7 6 4 9 9 C 1.34779 * 120.00249 * 35.10125 * 8 7 6 10 10 O 1.21587 * 119.99496 * 355.37820 * 9 8 7 11 11 N 1.34771 * 119.99915 * 175.37834 * 9 8 7 12 12 C 1.46502 * 119.99901 * 179.97438 * 11 9 8 13 13 C 1.50700 * 109.47203 * 180.02562 * 12 11 9 14 14 H 1.07997 * 120.00016 * 0.02562 * 13 12 11 15 15 C 1.37882 * 119.99989 * 179.97438 * 13 12 11 16 16 N 1.31521 * 119.99752 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 119.99916 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.46703 * 90.00729 * 17 15 13 19 19 H 1.48504 * 109.47212 * 209.99902 * 17 15 13 20 20 H 1.48496 * 109.47538 * 330.00586 * 17 15 13 21 21 C 1.38823 * 119.99752 * 0.25674 * 7 6 4 22 22 C 1.38316 * 120.00285 * 359.45022 * 21 7 6 23 23 F 1.35095 * 120.00276 * 180.30069 * 22 21 7 24 24 H 1.09001 * 109.46993 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47208 * 299.99712 * 1 2 3 26 26 H 1.08998 * 109.47237 * 60.00259 * 1 2 3 27 27 H 1.07998 * 119.99954 * 180.02562 * 6 4 3 28 28 H 0.97002 * 120.00079 * 215.09668 * 8 7 6 29 29 H 0.96998 * 120.00327 * 359.72490 * 11 9 8 30 30 H 1.09004 * 109.47097 * 300.00240 * 12 11 9 31 31 H 1.09005 * 109.47464 * 60.00052 * 12 11 9 32 32 H 0.96997 * 119.99570 * 179.97438 * 16 15 13 33 33 H 1.08003 * 119.99461 * 179.72272 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0468 1.2126 0.0000 4 6 2.3619 1.8310 1.2023 5 9 2.0548 1.2294 2.3722 6 6 2.9893 3.0637 1.2022 7 6 3.3035 3.6827 -0.0001 8 7 3.9386 4.9318 0.0000 9 6 4.8427 5.2281 0.9546 10 8 5.0458 4.4460 1.8632 11 7 5.5216 6.3911 0.9021 12 6 6.5039 6.7134 1.9400 13 6 7.1167 8.0596 1.6512 14 1 6.8053 8.6193 0.7816 15 6 8.0742 8.5772 2.4976 16 7 8.4531 7.8957 3.5568 17 14 8.8343 10.2454 2.1391 18 1 8.0329 11.3067 2.8000 19 1 10.2246 10.2782 2.6600 20 1 8.8496 10.4776 0.6725 21 6 2.9830 3.0669 -1.2023 22 6 2.3611 1.8315 -1.2023 23 9 2.0547 1.2294 -2.3722 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 3.2348 3.5447 2.1375 28 1 3.7277 5.5832 -0.6871 29 1 5.3625 7.0132 0.1751 30 1 6.0104 6.7402 2.9116 31 1 7.2848 5.9530 1.9501 32 1 9.1270 8.2597 4.1520 33 1 3.2234 3.5505 -2.1375 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000488388341.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:36 Heat of formation + Delta-G solvation = -125.793554 kcal Electronic energy + Delta-G solvation = -21724.646686 eV Core-core repulsion = 17808.314902 eV Total energy + Delta-G solvation = -3916.331784 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.092 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.16852 -49.02314 -40.47397 -39.21557 -37.54197 -34.47615 -34.18219 -32.42794 -30.53015 -29.50563 -27.46419 -26.59172 -23.58044 -23.22404 -22.18036 -20.59425 -18.77815 -18.55927 -18.06890 -17.41422 -16.57565 -16.32677 -15.92466 -15.73288 -15.42211 -15.18520 -15.05976 -14.86502 -14.71177 -14.68225 -14.17493 -13.32628 -13.09872 -12.97543 -12.42252 -12.32622 -12.08637 -12.02189 -11.72844 -11.04938 -10.96394 -10.41323 -10.31048 -10.14118 -9.68582 -9.48815 -8.92229 -8.85508 -8.36890 -7.95635 -6.24237 -4.31928 0.66328 0.80362 2.72325 2.93106 3.19627 3.26346 3.28366 3.39584 3.64209 3.74663 4.22130 4.24874 4.61064 4.65688 4.86792 5.01322 5.05310 5.11358 5.12325 5.28733 5.41875 5.63201 5.73529 5.98071 6.20020 6.63772 6.80104 7.13681 7.22700 7.36540 7.41360 7.67096 7.88449 8.52501 8.70440 8.98647 9.34836 10.85814 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.039548 B = 0.003070 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.831487 B = 9116.921349 C = 9671.171459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.318 6.318 3 C -0.005 4.005 4 C 0.135 3.865 5 F -0.121 7.121 6 C -0.157 4.157 7 C 0.239 3.761 8 N -0.691 5.691 9 C 0.690 3.310 10 O -0.577 6.577 11 N -0.716 5.716 12 C 0.265 3.735 13 C -0.546 4.546 14 H 0.064 0.936 15 C 0.065 3.935 16 N -0.884 5.884 17 Si 0.906 3.094 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.273 1.273 21 C -0.190 4.190 22 C 0.133 3.867 23 F -0.124 7.124 24 H 0.098 0.902 25 H 0.049 0.951 26 H 0.048 0.952 27 H 0.169 0.831 28 H 0.410 0.590 29 H 0.390 0.610 30 H 0.029 0.971 31 H 0.029 0.971 32 H 0.267 0.733 33 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.571 -9.353 -10.334 20.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.235 6.235 3 C -0.051 4.051 4 C 0.115 3.885 5 F -0.099 7.099 6 C -0.179 4.179 7 C 0.140 3.860 8 N -0.339 5.339 9 C 0.390 3.610 10 O -0.454 6.454 11 N -0.367 5.367 12 C 0.144 3.856 13 C -0.585 4.585 14 H 0.082 0.918 15 C -0.139 4.139 16 N -0.521 5.521 17 Si 0.733 3.267 18 H -0.204 1.204 19 H -0.209 1.209 20 H -0.197 1.197 21 C -0.213 4.213 22 C 0.112 3.888 23 F -0.102 7.102 24 H 0.116 0.884 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.186 0.814 28 H 0.246 0.754 29 H 0.223 0.777 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.077 0.923 33 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -15.061 -10.161 -9.267 20.396 hybrid contribution 0.077 1.441 -0.823 1.662 sum -14.984 -8.720 -10.091 20.059 Atomic orbital electron populations 1.23111 0.78898 1.03617 1.00833 1.86188 1.20161 1.23004 1.94105 1.18431 1.06131 0.90096 0.90477 1.17458 0.99064 0.91513 0.80505 1.91530 1.90666 1.82724 1.44993 1.21425 1.00500 0.94973 1.00990 1.16812 0.91509 0.85925 0.91755 1.42878 1.43082 1.15103 1.32814 1.16158 0.79220 0.83639 0.82012 1.90909 1.69414 1.49739 1.35350 1.45808 1.42527 1.17538 1.30847 1.19120 0.85448 0.95868 0.85162 1.21179 1.23328 1.02909 1.11036 0.91820 1.24945 0.96194 0.98103 0.94702 1.69971 1.30658 1.37954 1.13473 0.86385 0.78556 0.83204 0.78584 1.20422 1.20945 1.19741 1.20731 1.06703 0.94957 0.98870 1.17187 0.99860 0.91291 0.80441 1.91517 1.90865 1.82877 1.44967 0.88405 0.93241 0.93344 0.81360 0.75427 0.77679 0.95291 0.95299 0.92308 0.83242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.13 101.05 1.13 1.39 16 2 O -0.32 -4.13 10.14 -20.02 -0.20 -4.33 16 3 C 0.00 -0.06 5.74 -39.15 -0.22 -0.29 16 4 C 0.14 1.92 7.30 -39.33 -0.29 1.63 16 5 F -0.12 -1.78 17.11 2.25 0.04 -1.74 16 6 C -0.16 -2.33 8.67 -39.33 -0.34 -2.67 16 7 C 0.24 3.14 6.30 -83.63 -0.53 2.62 16 8 N -0.69 -9.09 5.35 -14.20 -0.08 -9.16 16 9 C 0.69 12.75 8.41 -86.92 -0.73 12.02 16 10 O -0.58 -13.00 13.78 5.29 0.07 -12.93 16 11 N -0.72 -13.80 5.55 -66.41 -0.37 -14.17 16 12 C 0.26 6.64 5.43 -5.19 -0.03 6.61 16 13 C -0.55 -14.13 9.28 -34.44 -0.32 -14.45 16 14 H 0.06 1.53 7.60 -52.49 -0.40 1.13 16 15 C 0.06 1.73 5.46 -17.81 -0.10 1.64 16 16 N -0.88 -25.29 13.29 55.43 0.74 -24.55 16 17 Si 0.91 20.18 29.54 -169.99 -5.02 15.16 16 18 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 19 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 20 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 21 C -0.19 -2.09 9.94 -39.34 -0.39 -2.48 16 22 C 0.13 1.61 7.30 -39.33 -0.29 1.32 16 23 F -0.12 -1.48 17.11 2.25 0.04 -1.44 16 24 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.17 2.85 6.22 -52.49 -0.33 2.53 16 28 H 0.41 3.76 8.84 -40.82 -0.36 3.40 16 29 H 0.39 6.20 8.34 -40.82 -0.34 5.86 16 30 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 33 H 0.15 1.23 8.06 -52.48 -0.42 0.81 16 LS Contribution 306.20 15.07 4.61 4.61 Total: -1.00 -31.49 306.20 -5.37 -36.86 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -3.10 Total: 4.36 kcal Atomic # 6 Polarization: 9.44 SS G_CDS: -2.11 Total: 7.33 kcal Atomic # 7 Polarization: -48.17 SS G_CDS: 0.29 Total: -47.88 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: -0.13 Total: -17.26 kcal Atomic # 9 Polarization: -3.27 SS G_CDS: 0.08 Total: -3.19 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.49 -5.37 -36.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488388341.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.932 kcal (2) G-P(sol) polarization free energy of solvation -31.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds