Wall clock time and date at job start Tue Mar 31 2020 06:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36088 * 116.99773 * 2 1 4 4 C 1.38823 * 119.99938 * 90.00102 * 3 2 1 5 5 F 1.35099 * 120.00113 * 359.97438 * 4 3 2 6 6 C 1.38319 * 119.99921 * 180.02562 * 4 3 2 7 7 C 1.38830 * 119.99941 * 0.02562 * 6 4 3 8 8 N 1.40129 * 119.99685 * 179.97438 * 7 6 4 9 9 C 1.34779 * 120.00249 * 35.10125 * 8 7 6 10 10 O 1.21587 * 119.99496 * 355.37820 * 9 8 7 11 11 N 1.34771 * 119.99915 * 175.37834 * 9 8 7 12 12 C 1.46502 * 119.99901 * 179.97438 * 11 9 8 13 13 C 1.50700 * 109.47203 * 180.02562 * 12 11 9 14 14 H 1.07997 * 120.00016 * 0.02562 * 13 12 11 15 15 C 1.37882 * 119.99989 * 179.97438 * 13 12 11 16 16 N 1.31521 * 119.99752 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 119.99916 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.46703 * 90.00729 * 17 15 13 19 19 H 1.48504 * 109.47212 * 209.99902 * 17 15 13 20 20 H 1.48496 * 109.47538 * 330.00586 * 17 15 13 21 21 C 1.38823 * 119.99752 * 0.25674 * 7 6 4 22 22 C 1.38316 * 120.00285 * 359.45022 * 21 7 6 23 23 F 1.35095 * 120.00276 * 180.30069 * 22 21 7 24 24 H 1.09001 * 109.46993 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47208 * 299.99712 * 1 2 3 26 26 H 1.08998 * 109.47237 * 60.00259 * 1 2 3 27 27 H 1.07998 * 119.99954 * 180.02562 * 6 4 3 28 28 H 0.97002 * 120.00079 * 215.09668 * 8 7 6 29 29 H 0.96998 * 120.00327 * 359.72490 * 11 9 8 30 30 H 1.09004 * 109.47097 * 300.00240 * 12 11 9 31 31 H 1.09005 * 109.47464 * 60.00052 * 12 11 9 32 32 H 0.96997 * 119.99570 * 179.97438 * 16 15 13 33 33 H 1.08003 * 119.99461 * 179.72272 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0468 1.2126 0.0000 4 6 2.3619 1.8310 1.2023 5 9 2.0548 1.2294 2.3722 6 6 2.9893 3.0637 1.2022 7 6 3.3035 3.6827 -0.0001 8 7 3.9386 4.9318 0.0000 9 6 4.8427 5.2281 0.9546 10 8 5.0458 4.4460 1.8632 11 7 5.5216 6.3911 0.9021 12 6 6.5039 6.7134 1.9400 13 6 7.1167 8.0596 1.6512 14 1 6.8053 8.6193 0.7816 15 6 8.0742 8.5772 2.4976 16 7 8.4531 7.8957 3.5568 17 14 8.8343 10.2454 2.1391 18 1 8.0329 11.3067 2.8000 19 1 10.2246 10.2782 2.6600 20 1 8.8496 10.4776 0.6725 21 6 2.9830 3.0669 -1.2023 22 6 2.3611 1.8315 -1.2023 23 9 2.0547 1.2294 -2.3722 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 3.2348 3.5447 2.1375 28 1 3.7277 5.5832 -0.6871 29 1 5.3625 7.0132 0.1751 30 1 6.0104 6.7402 2.9116 31 1 7.2848 5.9530 1.9501 32 1 9.1270 8.2597 4.1520 33 1 3.2234 3.5505 -2.1375 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000488388341.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:36 Heat of formation + Delta-G solvation = -148.434463 kcal Electronic energy + Delta-G solvation = -21725.628469 eV Core-core repulsion = 17808.314902 eV Total energy + Delta-G solvation = -3917.313567 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.092 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.16045 -50.11446 -41.76703 -40.34436 -38.69029 -36.22803 -35.51831 -34.31801 -31.57491 -30.67724 -29.08193 -27.64031 -25.11034 -24.39369 -23.57926 -22.06413 -20.17526 -19.75198 -19.06152 -18.61126 -18.01448 -17.56398 -17.31529 -16.94621 -16.57193 -16.46181 -16.37039 -16.16295 -15.88565 -15.69774 -15.54244 -14.97869 -14.32310 -14.09178 -14.04317 -13.86623 -13.37740 -13.18060 -12.89632 -12.72205 -12.65477 -12.21237 -11.47759 -11.42260 -11.29166 -11.14345 -10.80189 -9.97048 -9.96678 -9.28100 -8.27791 -6.43827 -0.38026 -0.23131 1.41214 1.47721 1.48913 1.59446 1.80724 2.21293 2.38463 2.47138 2.71880 3.08118 3.17646 3.28818 3.66030 3.84762 3.99589 4.34768 4.36718 4.40226 4.58396 4.68504 4.70766 4.95387 5.04206 5.11148 5.26880 5.44494 5.51451 5.59876 5.83019 6.08067 6.19524 6.67101 7.10143 7.25853 7.51965 8.84239 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.039548 B = 0.003070 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.831487 B = 9116.921349 C = 9671.171459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.339 6.339 3 C 0.002 3.998 4 C 0.120 3.880 5 F -0.131 7.131 6 C -0.169 4.169 7 C 0.225 3.775 8 N -0.665 5.665 9 C 0.692 3.308 10 O -0.622 6.622 11 N -0.709 5.709 12 C 0.283 3.717 13 C -0.554 4.554 14 H 0.087 0.913 15 C 0.005 3.995 16 N -0.930 5.930 17 Si 0.984 3.016 18 H -0.272 1.272 19 H -0.287 1.287 20 H -0.254 1.254 21 C -0.157 4.157 22 C 0.133 3.867 23 F -0.119 7.119 24 H 0.121 0.879 25 H 0.051 0.949 26 H 0.060 0.940 27 H 0.140 0.860 28 H 0.433 0.567 29 H 0.410 0.590 30 H -0.008 1.008 31 H -0.009 1.009 32 H 0.268 0.732 33 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.470 -8.389 -13.294 22.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.256 6.256 3 C -0.045 4.045 4 C 0.099 3.901 5 F -0.109 7.109 6 C -0.191 4.191 7 C 0.127 3.873 8 N -0.315 5.315 9 C 0.393 3.607 10 O -0.502 6.502 11 N -0.362 5.362 12 C 0.160 3.840 13 C -0.592 4.592 14 H 0.105 0.895 15 C -0.195 4.195 16 N -0.569 5.569 17 Si 0.807 3.193 18 H -0.197 1.197 19 H -0.213 1.213 20 H -0.178 1.178 21 C -0.179 4.179 22 C 0.112 3.888 23 F -0.097 7.097 24 H 0.139 0.861 25 H 0.069 0.931 26 H 0.079 0.921 27 H 0.158 0.842 28 H 0.274 0.726 29 H 0.247 0.753 30 H 0.010 0.990 31 H 0.008 0.992 32 H 0.077 0.923 33 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -16.031 -9.193 -12.313 22.207 hybrid contribution 0.233 0.987 0.071 1.016 sum -15.798 -8.207 -12.243 21.606 Atomic orbital electron populations 1.23376 0.76651 1.05466 1.01544 1.86140 1.22341 1.22888 1.94185 1.18537 1.05540 0.89949 0.90489 1.17495 1.00171 0.91680 0.80743 1.91496 1.90893 1.82887 1.45644 1.21270 1.01465 0.95541 1.00799 1.16842 0.92431 0.85997 0.92036 1.42370 1.41465 1.15768 1.31889 1.16217 0.79545 0.82717 0.82264 1.90899 1.70817 1.51008 1.37484 1.45297 1.41923 1.18570 1.30409 1.18511 0.85200 0.95057 0.85238 1.21599 1.23029 1.02969 1.11586 0.89503 1.26027 0.96785 1.02391 0.94317 1.70136 1.31595 1.40271 1.14898 0.85172 0.77089 0.77764 0.79284 1.19723 1.21268 1.17802 1.20924 1.03856 0.93912 0.99204 1.17162 0.99917 0.91561 0.80124 1.91537 1.90810 1.82856 1.44487 0.86111 0.93069 0.92083 0.84185 0.72647 0.75332 0.99043 0.99152 0.92278 0.79401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 11.13 113.37 1.26 1.63 16 2 O -0.34 -8.36 10.14 -94.55 -0.96 -9.32 16 3 C 0.00 0.04 5.74 22.55 0.13 0.17 16 4 C 0.12 3.43 7.30 22.43 0.16 3.59 16 5 F -0.13 -4.01 17.11 44.97 0.77 -3.24 16 6 C -0.17 -5.10 8.67 22.43 0.19 -4.91 16 7 C 0.22 5.58 6.30 38.10 0.24 5.82 16 8 N -0.66 -16.34 5.35 -317.09 -1.70 -18.04 16 9 C 0.69 25.67 8.41 179.06 1.51 27.17 16 10 O -0.62 -29.23 13.78 -3.99 -0.05 -29.28 16 11 N -0.71 -27.21 5.55 -482.29 -2.68 -29.89 16 12 C 0.28 14.68 5.43 85.63 0.46 15.14 16 13 C -0.55 -28.56 9.28 25.60 0.24 -28.32 16 14 H 0.09 3.98 7.60 -2.91 -0.02 3.95 16 15 C 0.00 0.25 5.46 84.65 0.46 0.71 16 16 N -0.93 -54.68 13.29 21.45 0.28 -54.40 16 17 Si 0.98 40.84 29.54 68.60 2.03 42.86 16 18 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 19 H -0.29 -11.96 7.11 99.48 0.71 -11.25 16 20 H -0.25 -9.74 7.11 99.48 0.71 -9.03 16 21 C -0.16 -2.93 9.94 22.43 0.22 -2.71 16 22 C 0.13 2.87 7.30 22.43 0.16 3.04 16 23 F -0.12 -2.46 17.11 44.97 0.77 -1.69 16 24 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.14 5.08 6.22 -2.91 -0.02 5.07 16 28 H 0.43 6.53 8.84 -92.71 -0.82 5.71 16 29 H 0.41 12.28 8.34 -92.71 -0.77 11.51 16 30 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 31 H -0.01 -0.56 8.14 -2.38 -0.02 -0.58 16 32 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 33 H 0.19 2.08 8.06 -2.91 -0.02 2.05 16 Total: -1.00 -71.16 306.20 3.11 -68.06 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -0.40 Total: 13.60 kcal Atomic # 6 Polarization: 16.28 SS G_CDS: 5.05 Total: 21.33 kcal Atomic # 7 Polarization: -98.24 SS G_CDS: -4.09 Total: -102.33 kcal Atomic # 8 Polarization: -37.58 SS G_CDS: -1.01 Total: -38.60 kcal Atomic # 9 Polarization: -6.47 SS G_CDS: 1.54 Total: -4.93 kcal Atomic # 14 Polarization: 40.84 SS G_CDS: 2.03 Total: 42.86 kcal Total: -71.16 3.11 -68.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488388341.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.375 kcal (2) G-P(sol) polarization free energy of solvation -71.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds