Wall clock time and date at job start Tue Mar 31 2020 06:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46497 * 109.46636 * 146.88602 * 3 2 1 5 5 C 1.36822 * 119.99681 * 263.35951 * 4 3 2 6 6 H 1.07994 * 120.00157 * 33.17906 * 5 4 3 7 7 C 1.39052 * 119.99839 * 213.17165 * 5 4 3 8 8 N 1.31365 * 120.00246 * 22.07690 * 7 5 4 9 9 Si 1.86797 * 119.99859 * 202.08071 * 7 5 4 10 10 H 1.48504 * 109.47282 * 90.00107 * 9 7 5 11 11 H 1.48504 * 109.47145 * 210.00069 * 9 7 5 12 12 H 1.48500 * 109.47212 * 329.99964 * 9 7 5 13 13 C 1.34780 * 120.00280 * 83.36984 * 4 3 2 14 14 O 1.21707 * 120.00070 * 182.42526 * 13 4 3 15 15 C 1.46833 * 119.99607 * 2.41792 * 13 4 3 16 16 C 1.36040 * 125.44780 * 166.62225 * 15 13 4 17 17 C 1.41479 * 107.73231 * 179.97438 * 16 15 13 18 18 C 1.40878 * 107.01553 * 0.02562 * 17 16 15 19 19 C 1.39140 * 119.53977 * 179.97438 * 18 17 16 20 20 C 1.37750 * 120.01097 * 0.02562 * 19 18 17 21 21 C 1.38843 * 120.68623 * 359.95699 * 20 19 18 22 22 C 1.37724 * 120.44151 * 0.29900 * 21 20 19 23 23 F 1.35102 * 120.17433 * 179.69665 * 22 21 20 24 24 N 1.37567 * 107.38649 * 0.02562 * 18 17 16 25 25 H 0.97002 * 125.61406 * 179.97438 * 24 18 17 26 26 H 4.40633 * 5.51576 * 180.02562 * 4 1 2 27 27 H 1.09000 * 109.47184 * 26.88238 * 3 2 1 28 28 H 1.08998 * 109.46854 * 266.88258 * 3 2 1 29 29 H 0.97003 * 120.00571 * 184.98119 * 8 7 5 30 30 H 1.08002 * 126.12932 * 359.97438 * 16 15 13 31 31 H 1.08001 * 119.99566 * 180.02562 * 19 18 17 32 32 H 1.08001 * 119.65330 * 179.97438 * 20 19 18 33 33 H 1.08003 * 119.77707 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.1578 -0.7546 5 6 3.4909 1.0169 -2.0678 6 1 2.9696 0.3102 -2.6964 7 6 4.5251 1.7837 -2.5931 8 7 5.4290 2.3032 -1.7939 9 14 4.6289 2.0753 -4.4353 10 1 3.8726 3.3043 -4.7854 11 1 6.0508 2.2395 -4.8311 12 1 4.0461 0.9138 -5.1539 13 6 3.2307 2.3610 -0.1552 14 8 3.5937 3.3315 -0.7937 15 6 2.8981 2.5011 1.2682 16 6 3.1937 3.5779 2.0452 17 6 2.7037 3.3176 3.3467 18 6 2.1051 2.0428 3.3145 19 6 1.5331 1.5241 4.4720 20 6 1.5541 2.2562 5.6386 21 6 2.1430 3.5129 5.6760 22 6 2.7115 4.0511 4.5429 23 9 3.2777 5.2771 4.5838 24 7 2.2356 1.5595 2.0331 25 1 1.9150 0.6999 1.7181 26 1 -1.0502 -0.0001 0.0003 27 1 3.0097 -0.9158 -0.4647 28 1 3.0092 0.0567 1.0261 29 1 6.1082 2.8969 -2.1506 30 1 3.7098 4.4713 1.7258 31 1 1.0725 0.5473 4.4557 32 1 1.1080 1.8482 6.5336 33 1 2.1516 4.0741 6.5988 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491014708.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:34 Heat of formation + Delta-G solvation = 59.702955 kcal Electronic energy + Delta-G solvation = -21877.439605 eV Core-core repulsion = 18399.920779 eV Total energy + Delta-G solvation = -3477.518827 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.086 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.82685 -42.66941 -40.18124 -37.59295 -36.94399 -34.63296 -33.23447 -32.83542 -30.66915 -29.73418 -28.44318 -26.96917 -24.46722 -23.28330 -22.31006 -21.38509 -19.57531 -19.51739 -18.84106 -17.96390 -17.14743 -16.83728 -16.70141 -16.56456 -16.34979 -16.06196 -15.81634 -15.17195 -15.07247 -14.72630 -14.27292 -14.02661 -13.91119 -13.79424 -13.33008 -12.90702 -12.80886 -12.48380 -12.42738 -12.29831 -12.13501 -11.69999 -11.31641 -11.09771 -10.79529 -10.48771 -9.42856 -9.32681 -8.70276 -8.31326 -6.07989 -0.25261 0.50227 1.17153 1.37634 1.46362 1.50981 1.59436 1.66804 2.02732 2.32100 2.63623 2.74149 3.01322 3.13646 3.30438 3.41660 3.73880 3.91553 4.01568 4.10857 4.13880 4.33797 4.48090 4.50062 4.75879 4.83475 4.96437 5.12686 5.28153 5.32750 5.41767 5.52007 5.56081 5.97032 6.06096 6.40015 6.53979 6.75778 6.97728 7.39649 8.05772 8.73692 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.022198 B = 0.005397 C = 0.004518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.071455 B = 5187.283434 C = 6196.536408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.261 4.261 3 C 0.186 3.814 4 N -0.446 5.446 5 C -0.360 4.360 6 H 0.099 0.901 7 C 0.012 3.988 8 N -0.843 5.843 9 Si 0.976 3.024 10 H -0.291 1.291 11 H -0.281 1.281 12 H -0.248 1.248 13 C 0.498 3.502 14 O -0.558 6.558 15 C 0.050 3.950 16 C -0.161 4.161 17 C -0.168 4.168 18 C 0.111 3.889 19 C -0.133 4.133 20 C -0.059 4.059 21 C -0.170 4.170 22 C 0.113 3.887 23 F -0.151 7.151 24 N -0.572 5.572 25 H 0.432 0.568 26 H 0.259 0.741 27 H 0.118 0.882 28 H 0.096 0.904 29 H 0.263 0.737 30 H 0.127 0.873 31 H 0.161 0.839 32 H 0.184 0.816 33 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.366 -6.403 14.348 18.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.262 4.262 3 C 0.063 3.937 4 N -0.165 5.165 5 C -0.487 4.487 6 H 0.117 0.883 7 C -0.196 4.196 8 N -0.478 5.478 9 Si 0.800 3.200 10 H -0.218 1.218 11 H -0.207 1.207 12 H -0.171 1.171 13 C 0.288 3.712 14 O -0.437 6.437 15 C -0.061 4.061 16 C -0.188 4.188 17 C -0.173 4.173 18 C 0.000 4.000 19 C -0.153 4.153 20 C -0.078 4.078 21 C -0.189 4.189 22 C 0.093 3.907 23 F -0.129 7.129 24 N -0.187 5.187 25 H 0.283 0.717 26 H 0.275 0.725 27 H 0.136 0.864 28 H 0.113 0.887 29 H 0.073 0.927 30 H 0.145 0.855 31 H 0.178 0.822 32 H 0.201 0.799 33 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -9.952 -6.009 13.866 18.095 hybrid contribution 0.560 0.623 -1.471 1.693 sum -9.392 -5.385 12.395 16.458 Atomic orbital electron populations 1.25856 0.96531 0.97235 0.96967 1.23831 0.95398 1.03359 1.03615 1.18997 0.84643 0.92378 0.97720 1.43425 1.56856 1.05164 1.11035 1.19548 1.15455 1.28131 0.85566 0.88341 1.26035 0.92947 0.97202 1.03456 1.70049 1.12113 1.26901 1.38709 0.85212 0.77210 0.78820 0.78747 1.21832 1.20678 1.17083 1.17230 0.85046 0.84007 0.84965 1.90633 1.49279 1.38980 1.64810 1.20543 1.01799 0.91628 0.92180 1.20636 1.06580 0.99206 0.92381 1.18289 1.07909 0.97419 0.93662 1.18645 1.01097 0.93204 0.87033 1.20559 1.03056 1.02568 0.89155 1.21162 0.96481 0.92005 0.98132 1.21226 1.02236 0.98604 0.96862 1.17579 0.98741 0.80540 0.93848 1.91429 1.83099 1.41279 1.97124 1.43427 1.49494 1.18312 1.07475 0.71686 0.72475 0.86435 0.88704 0.92701 0.85495 0.82163 0.79861 0.81884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.79 19.25 74.32 1.43 -2.36 16 2 C -0.26 -8.42 11.25 31.13 0.35 -8.07 16 3 C 0.19 6.96 5.46 84.58 0.46 7.42 16 4 N -0.45 -22.59 2.55 -649.81 -1.66 -24.25 16 5 C -0.36 -19.63 9.34 84.11 0.79 -18.84 16 6 H 0.10 5.00 7.92 -2.91 -0.02 4.97 16 7 C 0.01 0.68 4.29 84.96 0.36 1.05 16 8 N -0.84 -51.63 11.02 21.68 0.24 -51.39 16 9 Si 0.98 45.02 29.61 68.60 2.03 47.05 16 10 H -0.29 -14.04 7.11 99.48 0.71 -13.34 16 11 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 12 H -0.25 -10.27 7.11 99.48 0.71 -9.56 16 13 C 0.50 27.46 6.85 86.49 0.59 28.05 16 14 O -0.56 -35.76 13.81 -4.37 -0.06 -35.82 16 15 C 0.05 2.30 6.53 39.87 0.26 2.56 16 16 C -0.16 -7.33 10.56 22.56 0.24 -7.10 16 17 C -0.17 -6.25 6.14 -21.33 -0.13 -6.38 16 18 C 0.11 3.51 7.25 39.11 0.28 3.80 16 19 C -0.13 -2.80 10.06 22.37 0.23 -2.57 16 20 C -0.06 -0.98 10.01 22.30 0.22 -0.76 16 21 C -0.17 -3.67 10.00 22.29 0.22 -3.44 16 22 C 0.11 3.57 7.35 22.66 0.17 3.74 16 23 F -0.15 -5.14 17.28 44.97 0.78 -4.36 16 24 N -0.57 -20.40 4.85 -177.19 -0.86 -21.26 16 25 H 0.43 13.47 3.55 -92.71 -0.33 13.14 16 26 H 0.26 3.98 7.80 -4.41 -0.03 3.94 16 27 H 0.12 4.03 7.99 -2.39 -0.02 4.01 16 28 H 0.10 3.28 5.16 -2.39 -0.01 3.26 16 29 H 0.26 15.63 8.32 -92.71 -0.77 14.86 16 30 H 0.13 6.15 8.06 -2.91 -0.02 6.12 16 31 H 0.16 2.22 8.06 -2.91 -0.02 2.20 16 32 H 0.18 1.32 8.06 -2.91 -0.02 1.29 16 33 H 0.16 2.48 8.06 -2.91 -0.02 2.46 16 Total: -1.00 -78.27 297.77 6.78 -71.49 By element: Atomic # 1 Polarization: 20.62 SS G_CDS: 0.84 Total: 21.46 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: 5.47 Total: -2.91 kcal Atomic # 7 Polarization: -94.63 SS G_CDS: -2.28 Total: -96.91 kcal Atomic # 8 Polarization: -35.76 SS G_CDS: -0.06 Total: -35.82 kcal Atomic # 9 Polarization: -5.14 SS G_CDS: 0.78 Total: -4.36 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -78.27 6.78 -71.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491014708.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.197 kcal (2) G-P(sol) polarization free energy of solvation -78.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds