Wall clock time and date at job start Tue Mar 31 2020 05:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00151 * 2 1 4 4 H 1.48497 * 109.46973 * 272.58068 * 3 2 1 5 5 H 1.48501 * 109.47133 * 32.58482 * 3 2 1 6 6 H 1.48505 * 109.47121 * 152.58307 * 3 2 1 7 7 C 1.37879 * 119.99886 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99965 * 354.05934 * 7 2 1 9 9 C 1.50697 * 120.00332 * 174.05868 * 7 2 1 10 10 C 1.53001 * 115.56365 * 90.75810 * 9 7 2 11 11 S 1.81002 * 109.46637 * 40.05263 * 10 9 7 12 12 C 1.76203 * 99.99647 * 184.36560 * 11 10 9 13 13 N 1.32254 * 120.63058 * 0.02562 * 12 11 10 14 14 N 1.28093 * 123.21831 * 179.97438 * 13 12 11 15 15 C 1.31315 * 123.52291 * 359.97438 * 14 13 12 16 16 C 1.40733 * 119.11578 * 0.02562 * 15 14 13 17 17 C 1.40080 * 122.73129 * 180.02562 * 16 15 14 18 18 C 1.36345 * 119.37794 * 179.23243 * 17 16 15 19 19 C 1.39276 * 121.05529 * 0.71599 * 18 17 16 20 20 C 1.36399 * 121.05249 * 359.53221 * 19 18 17 21 21 C 1.39843 * 119.40854 * 359.97438 * 20 19 18 22 22 C 1.53002 * 117.49644 * 305.07357 * 9 7 2 23 23 C 1.52996 * 60.03215 * 252.49807 * 22 9 7 24 24 H 0.96999 * 119.99865 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.46754 * 160.05144 * 10 9 7 26 26 H 1.08996 * 109.47025 * 280.05578 * 10 9 7 27 27 H 1.07994 * 120.44269 * 180.02562 * 15 14 13 28 28 H 1.08003 * 120.31103 * 359.97376 * 17 16 15 29 29 H 1.08008 * 119.47418 * 180.20494 * 18 17 16 30 30 H 1.08001 * 119.47767 * 179.51280 * 19 18 17 31 31 H 1.08002 * 120.30154 * 180.02562 * 20 19 18 32 32 H 1.09004 * 117.49814 * 359.97438 * 22 9 7 33 33 H 1.09000 * 117.50138 * 144.99415 * 22 9 7 34 34 H 1.08996 * 117.50011 * 107.50430 * 23 22 9 35 35 H 1.08997 * 117.49587 * 252.52164 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4421 2.0778 -1.3986 5 1 1.4750 2.6362 0.7540 6 1 3.5730 1.4249 0.6447 7 6 2.0045 -1.1941 0.0005 8 1 1.4688 -2.1269 0.0978 9 6 3.5054 -1.1978 -0.1345 10 6 4.2867 -1.1456 1.1799 11 16 3.4728 -2.1975 2.4076 12 6 4.4742 -1.8546 3.8162 13 7 5.4905 -1.0125 3.7316 14 7 6.2496 -0.7269 4.7231 15 6 6.0985 -1.2383 5.9231 16 6 5.0521 -2.1513 6.1515 17 6 4.8214 -2.7418 7.4006 18 6 3.7773 -3.6061 7.5493 19 6 2.9473 -3.9215 6.4763 20 6 3.1474 -3.3683 5.2457 21 6 4.2029 -2.4698 5.0601 22 6 4.1076 -0.4787 -1.3433 23 6 4.1099 -2.0075 -1.2844 24 1 -0.4850 0.8400 -0.0004 25 1 5.3031 -1.5019 1.0127 26 1 4.3169 -0.1187 1.5441 27 1 6.7681 -0.9620 6.7240 28 1 5.4571 -2.5055 8.2411 29 1 3.5960 -4.0597 8.5126 30 1 2.1324 -4.6154 6.6207 31 1 2.4961 -3.6211 4.4221 32 1 3.4182 -0.0033 -2.0411 33 1 5.0602 0.0319 -1.2021 34 1 3.4221 -2.5376 -1.9431 35 1 5.0640 -2.5027 -1.1039 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594888751.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:11 Heat of formation + Delta-G solvation = 96.371397 kcal Electronic energy + Delta-G solvation = -19303.950961 eV Core-core repulsion = 16394.235373 eV Total energy + Delta-G solvation = -2909.715588 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.083 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.05029 -37.93077 -37.03109 -33.31160 -32.16245 -31.72146 -30.43958 -28.08523 -25.59945 -24.98086 -24.12743 -22.57534 -21.67871 -19.27407 -18.38911 -18.12622 -17.20654 -16.41289 -15.75346 -15.07661 -14.89560 -14.74816 -14.42252 -13.88841 -13.84190 -13.52676 -13.15617 -12.67150 -12.55787 -12.37448 -12.09851 -11.61045 -11.27049 -11.02245 -10.82747 -10.61615 -10.43745 -10.23808 -10.01551 -9.65694 -9.41767 -9.41527 -9.09839 -8.74813 -8.64783 -8.45742 -7.08731 -6.18721 -4.21819 0.24426 0.67105 1.73920 1.90048 2.85722 2.94163 3.27291 3.37777 3.43799 3.94441 4.37464 4.38611 4.45382 4.58490 4.66648 4.80948 4.84440 4.99375 5.10300 5.11967 5.46675 5.63998 5.66057 5.71726 5.78571 5.87770 6.08265 6.15052 6.19683 6.25000 6.28878 6.43236 6.44486 6.61174 6.67235 6.91885 7.07315 7.63909 8.38598 8.83432 9.01205 9.44801 10.92121 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.021417 B = 0.005145 C = 0.004881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.043182 B = 5441.189108 C = 5735.379815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.088 3.912 3 Si 0.872 3.128 4 H -0.277 1.277 5 H -0.292 1.292 6 H -0.256 1.256 7 C -0.489 4.489 8 H 0.084 0.916 9 C 0.004 3.996 10 C -0.074 4.074 11 S 0.052 5.948 12 C 0.079 3.921 13 N -0.289 5.289 14 N -0.248 5.248 15 C 0.046 3.954 16 C -0.064 4.064 17 C -0.101 4.101 18 C -0.098 4.098 19 C -0.110 4.110 20 C -0.076 4.076 21 C -0.068 4.068 22 C -0.190 4.190 23 C -0.176 4.176 24 H 0.266 0.734 25 H 0.073 0.927 26 H 0.092 0.908 27 H 0.170 0.830 28 H 0.136 0.864 29 H 0.130 0.870 30 H 0.132 0.868 31 H 0.144 0.856 32 H 0.091 0.909 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.169 -6.920 13.469 17.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.116 4.116 3 Si 0.700 3.300 4 H -0.203 1.203 5 H -0.219 1.219 6 H -0.180 1.180 7 C -0.528 4.528 8 H 0.102 0.898 9 C 0.001 3.999 10 C -0.223 4.223 11 S 0.296 5.704 12 C -0.185 4.185 13 N -0.129 5.129 14 N -0.079 5.079 15 C -0.136 4.136 16 C -0.073 4.073 17 C -0.121 4.121 18 C -0.117 4.117 19 C -0.130 4.130 20 C -0.096 4.096 21 C -0.079 4.079 22 C -0.229 4.229 23 C -0.213 4.213 24 H 0.076 0.924 25 H 0.092 0.908 26 H 0.110 0.890 27 H 0.187 0.813 28 H 0.154 0.846 29 H 0.148 0.852 30 H 0.150 0.850 31 H 0.161 0.839 32 H 0.109 0.891 33 H 0.093 0.907 34 H 0.108 0.892 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 7.914 -6.451 12.164 15.881 hybrid contribution 0.699 0.976 1.132 1.650 sum 8.613 -5.475 13.296 16.761 Atomic orbital electron populations 1.69885 1.06364 1.27314 1.48806 1.24914 0.94486 0.98912 0.93321 0.86963 0.81032 0.83550 0.78493 1.20268 1.21915 1.17995 1.20166 0.86232 0.94872 1.51506 0.89847 1.19161 0.95265 1.01161 0.84282 1.23619 0.99706 1.01771 0.97211 1.86182 1.33337 1.53578 0.97286 1.26232 0.97630 0.94872 0.99734 1.73195 1.03564 1.14068 1.22071 1.72153 1.19671 1.18502 0.97528 1.24318 0.96920 0.95228 0.97095 1.18812 0.96217 0.97828 0.94417 1.20896 0.98417 0.97198 0.95595 1.21051 0.94463 0.97048 0.99160 1.21040 0.99648 0.99811 0.92505 1.21083 0.95675 0.94384 0.98485 1.18446 0.97557 0.99117 0.92804 1.22983 1.01340 0.94968 1.03649 1.22930 1.00909 0.93063 1.04442 0.92392 0.90789 0.88998 0.81310 0.84630 0.85248 0.84974 0.83873 0.89052 0.90668 0.89187 0.90758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.08 13.96 55.43 0.77 -25.30 16 2 C 0.09 2.43 5.46 -17.82 -0.10 2.34 16 3 Si 0.87 21.52 25.06 -169.99 -4.26 17.26 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.26 -6.13 5.40 56.52 0.31 -5.83 16 7 C -0.49 -12.93 8.14 -34.44 -0.28 -13.21 16 8 H 0.08 2.40 8.06 -52.48 -0.42 1.98 16 9 C 0.00 0.08 1.11 -155.62 -0.17 -0.09 16 10 C -0.07 -1.58 4.88 37.16 0.18 -1.40 16 11 S 0.05 1.02 19.58 -107.50 -2.11 -1.08 16 12 C 0.08 1.48 7.12 -16.17 -0.12 1.36 16 13 N -0.29 -5.78 10.22 31.82 0.33 -5.46 16 14 N -0.25 -4.47 11.39 30.89 0.35 -4.12 16 15 C 0.05 0.65 11.20 -16.83 -0.19 0.46 16 16 C -0.06 -0.88 5.75 -106.86 -0.61 -1.50 16 17 C -0.10 -1.00 9.84 -39.57 -0.39 -1.39 16 18 C -0.10 -0.88 9.95 -39.88 -0.40 -1.28 16 19 C -0.11 -1.13 9.95 -39.86 -0.40 -1.53 16 20 C -0.08 -1.03 9.46 -39.64 -0.37 -1.40 16 21 C -0.07 -1.09 5.76 -106.69 -0.61 -1.71 16 22 C -0.19 -3.98 7.62 -26.73 -0.20 -4.19 16 23 C -0.18 -3.49 9.89 -26.70 -0.26 -3.76 16 24 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 25 H 0.07 1.46 7.95 -51.92 -0.41 1.05 16 26 H 0.09 2.11 6.27 -51.92 -0.33 1.78 16 27 H 0.17 1.62 8.06 -52.49 -0.42 1.20 16 28 H 0.14 0.90 8.06 -52.48 -0.42 0.48 16 29 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 30 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 31 H 0.14 1.92 7.07 -52.49 -0.37 1.55 16 32 H 0.09 2.00 7.16 -51.93 -0.37 1.63 16 33 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 34 H 0.09 1.79 8.14 -51.93 -0.42 1.36 16 35 H 0.07 1.31 8.09 -51.93 -0.42 0.89 16 LS Contribution 307.36 15.07 4.63 4.63 Total: -1.00 -31.18 307.36 -8.30 -39.49 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -4.09 Total: 1.87 kcal Atomic # 6 Polarization: -23.36 SS G_CDS: -3.93 Total: -27.29 kcal Atomic # 7 Polarization: -36.34 SS G_CDS: 1.45 Total: -34.88 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.26 Total: 17.26 kcal Atomic # 16 Polarization: 1.02 SS G_CDS: -2.11 Total: -1.08 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.18 -8.30 -39.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594888751.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.856 kcal (2) G-P(sol) polarization free energy of solvation -31.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds