Wall clock time and date at job start Tue Mar 31 2020 05:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00151 * 2 1 4 4 H 1.48497 * 109.46973 * 272.58068 * 3 2 1 5 5 H 1.48501 * 109.47133 * 32.58482 * 3 2 1 6 6 H 1.48505 * 109.47121 * 152.58307 * 3 2 1 7 7 C 1.37879 * 119.99886 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99965 * 354.05934 * 7 2 1 9 9 C 1.50697 * 120.00332 * 174.05868 * 7 2 1 10 10 C 1.53001 * 115.56365 * 90.75810 * 9 7 2 11 11 S 1.81002 * 109.46637 * 40.05263 * 10 9 7 12 12 C 1.76203 * 99.99647 * 184.36560 * 11 10 9 13 13 N 1.32254 * 120.63058 * 0.02562 * 12 11 10 14 14 N 1.28093 * 123.21831 * 179.97438 * 13 12 11 15 15 C 1.31315 * 123.52291 * 359.97438 * 14 13 12 16 16 C 1.40733 * 119.11578 * 0.02562 * 15 14 13 17 17 C 1.40080 * 122.73129 * 180.02562 * 16 15 14 18 18 C 1.36345 * 119.37794 * 179.23243 * 17 16 15 19 19 C 1.39276 * 121.05529 * 0.71599 * 18 17 16 20 20 C 1.36399 * 121.05249 * 359.53221 * 19 18 17 21 21 C 1.39843 * 119.40854 * 359.97438 * 20 19 18 22 22 C 1.53002 * 117.49644 * 305.07357 * 9 7 2 23 23 C 1.52996 * 60.03215 * 252.49807 * 22 9 7 24 24 H 0.96999 * 119.99865 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.46754 * 160.05144 * 10 9 7 26 26 H 1.08996 * 109.47025 * 280.05578 * 10 9 7 27 27 H 1.07994 * 120.44269 * 180.02562 * 15 14 13 28 28 H 1.08003 * 120.31103 * 359.97376 * 17 16 15 29 29 H 1.08008 * 119.47418 * 180.20494 * 18 17 16 30 30 H 1.08001 * 119.47767 * 179.51280 * 19 18 17 31 31 H 1.08002 * 120.30154 * 180.02562 * 20 19 18 32 32 H 1.09004 * 117.49814 * 359.97438 * 22 9 7 33 33 H 1.09000 * 117.50138 * 144.99415 * 22 9 7 34 34 H 1.08996 * 117.50011 * 107.50430 * 23 22 9 35 35 H 1.08997 * 117.49587 * 252.52164 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4421 2.0778 -1.3986 5 1 1.4750 2.6362 0.7540 6 1 3.5730 1.4249 0.6447 7 6 2.0045 -1.1941 0.0005 8 1 1.4688 -2.1269 0.0978 9 6 3.5054 -1.1978 -0.1345 10 6 4.2867 -1.1456 1.1799 11 16 3.4728 -2.1975 2.4076 12 6 4.4742 -1.8546 3.8162 13 7 5.4905 -1.0125 3.7316 14 7 6.2496 -0.7269 4.7231 15 6 6.0985 -1.2383 5.9231 16 6 5.0521 -2.1513 6.1515 17 6 4.8214 -2.7418 7.4006 18 6 3.7773 -3.6061 7.5493 19 6 2.9473 -3.9215 6.4763 20 6 3.1474 -3.3683 5.2457 21 6 4.2029 -2.4698 5.0601 22 6 4.1076 -0.4787 -1.3433 23 6 4.1099 -2.0075 -1.2844 24 1 -0.4850 0.8400 -0.0004 25 1 5.3031 -1.5019 1.0127 26 1 4.3169 -0.1187 1.5441 27 1 6.7681 -0.9620 6.7240 28 1 5.4571 -2.5055 8.2411 29 1 3.5960 -4.0597 8.5126 30 1 2.1324 -4.6154 6.6207 31 1 2.4961 -3.6211 4.4221 32 1 3.4182 -0.0033 -2.0411 33 1 5.0602 0.0319 -1.2021 34 1 3.4221 -2.5376 -1.9431 35 1 5.0640 -2.5027 -1.1039 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594888751.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:10 Heat of formation + Delta-G solvation = 77.475007 kcal Electronic energy + Delta-G solvation = -19304.770370 eV Core-core repulsion = 16394.235373 eV Total energy + Delta-G solvation = -2910.534997 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.083 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.16036 -38.96980 -38.76079 -34.42617 -34.25574 -32.72846 -31.49671 -29.73251 -27.55610 -26.17437 -25.19074 -23.56393 -23.33001 -21.07405 -19.51046 -19.27333 -18.59840 -18.00629 -17.02836 -16.78396 -16.23745 -15.71816 -15.67049 -15.48314 -15.01205 -14.93598 -14.72893 -14.64708 -13.79478 -13.57016 -13.19857 -13.07829 -12.72913 -12.49314 -12.30390 -12.15527 -12.05522 -11.98194 -11.75452 -11.25087 -10.92615 -10.71837 -10.65521 -10.38606 -10.23035 -9.74973 -8.56605 -8.32405 -6.36535 -0.79870 -0.36069 0.48037 0.73008 1.28619 1.31682 1.34932 1.46700 1.92816 2.32872 2.88767 3.01806 3.14860 3.28107 3.44550 3.63097 3.72861 3.83155 3.97377 4.19032 4.22385 4.26883 4.36327 4.47661 4.49537 4.67243 4.72393 4.82411 4.83336 4.94594 5.00434 5.19197 5.27135 5.33086 5.39268 5.44269 5.66123 5.79316 6.26437 6.69244 7.32030 7.77540 8.82329 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.021417 B = 0.005145 C = 0.004881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.043182 B = 5441.189108 C = 5735.379815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.039 3.961 3 Si 0.919 3.081 4 H -0.263 1.263 5 H -0.300 1.300 6 H -0.247 1.247 7 C -0.475 4.475 8 H 0.046 0.954 9 C -0.025 4.025 10 C -0.059 4.059 11 S 0.015 5.985 12 C 0.064 3.936 13 N -0.321 5.321 14 N -0.297 5.297 15 C 0.072 3.928 16 C -0.086 4.086 17 C -0.084 4.084 18 C -0.089 4.089 19 C -0.089 4.089 20 C -0.111 4.111 21 C -0.090 4.090 22 C -0.186 4.186 23 C -0.155 4.155 24 H 0.266 0.734 25 H 0.085 0.915 26 H 0.069 0.931 27 H 0.218 0.782 28 H 0.181 0.819 29 H 0.177 0.823 30 H 0.163 0.837 31 H 0.129 0.871 32 H 0.080 0.920 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.276 -7.826 16.866 21.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.160 4.160 3 Si 0.745 3.255 4 H -0.188 1.188 5 H -0.227 1.227 6 H -0.170 1.170 7 C -0.514 4.514 8 H 0.064 0.936 9 C -0.027 4.027 10 C -0.208 4.208 11 S 0.257 5.743 12 C -0.201 4.201 13 N -0.159 5.159 14 N -0.127 5.127 15 C -0.109 4.109 16 C -0.094 4.094 17 C -0.104 4.104 18 C -0.108 4.108 19 C -0.108 4.108 20 C -0.131 4.131 21 C -0.101 4.101 22 C -0.225 4.225 23 C -0.192 4.192 24 H 0.075 0.925 25 H 0.104 0.896 26 H 0.088 0.912 27 H 0.234 0.766 28 H 0.198 0.802 29 H 0.194 0.806 30 H 0.181 0.819 31 H 0.147 0.853 32 H 0.099 0.901 33 H 0.116 0.884 34 H 0.105 0.895 35 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 10.069 -7.344 15.556 19.933 hybrid contribution 0.073 1.048 0.422 1.132 sum 10.142 -6.296 15.978 19.945 Atomic orbital electron populations 1.70000 1.07877 1.27889 1.51737 1.25555 0.94959 1.01838 0.93647 0.86189 0.80179 0.80059 0.79031 1.18832 1.22707 1.17047 1.20216 0.88427 0.93139 1.49574 0.93557 1.19089 0.93269 1.04479 0.85896 1.23321 1.00098 1.00785 0.96596 1.86094 1.35349 1.54342 0.98541 1.25987 0.97945 0.96279 0.99925 1.73030 1.04256 1.14731 1.23871 1.72073 1.20682 1.20997 0.98907 1.25129 0.96408 0.92744 0.96623 1.19174 0.96049 0.98729 0.95483 1.21436 0.98674 0.95501 0.94797 1.21622 0.92942 0.95826 1.00395 1.21527 0.99806 0.98193 0.91321 1.21121 0.95999 0.95963 1.00011 1.18701 0.99042 0.99842 0.92485 1.23021 1.01802 0.95903 1.01795 1.22972 1.01676 0.92681 1.01860 0.92510 0.89627 0.91239 0.76592 0.80168 0.80560 0.81942 0.85272 0.90143 0.88371 0.89503 0.87819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.61 13.96 21.45 0.30 -57.31 16 2 C 0.04 2.26 5.46 84.66 0.46 2.72 16 3 Si 0.92 45.47 25.06 68.60 1.72 47.19 16 4 H -0.26 -12.33 7.11 99.48 0.71 -11.62 16 5 H -0.30 -15.05 7.11 99.48 0.71 -14.35 16 6 H -0.25 -11.76 5.40 99.48 0.54 -11.22 16 7 C -0.47 -26.23 8.14 25.60 0.21 -26.02 16 8 H 0.05 2.84 8.06 -2.91 -0.02 2.82 16 9 C -0.03 -1.16 1.11 -52.90 -0.06 -1.22 16 10 C -0.06 -2.59 4.88 71.98 0.35 -2.24 16 11 S 0.01 0.63 19.58 -56.49 -1.11 -0.48 16 12 C 0.06 2.48 7.12 85.41 0.61 3.09 16 13 N -0.32 -13.18 10.22 -53.23 -0.54 -13.72 16 14 N -0.30 -10.62 11.39 -56.20 -0.64 -11.26 16 15 C 0.07 1.84 11.20 85.38 0.96 2.80 16 16 C -0.09 -2.12 5.75 -21.31 -0.12 -2.24 16 17 C -0.08 -1.20 9.84 22.28 0.22 -0.99 16 18 C -0.09 -1.08 9.95 22.08 0.22 -0.86 16 19 C -0.09 -1.52 9.95 22.09 0.22 -1.30 16 20 C -0.11 -2.94 9.46 22.23 0.21 -2.73 16 21 C -0.09 -2.86 5.76 -21.20 -0.12 -2.98 16 22 C -0.19 -7.63 7.62 30.59 0.23 -7.40 16 23 C -0.15 -6.02 9.89 30.62 0.30 -5.72 16 24 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 25 H 0.09 3.43 7.95 -2.40 -0.02 3.42 16 26 H 0.07 3.29 6.27 -2.40 -0.02 3.27 16 27 H 0.22 3.11 8.06 -2.91 -0.02 3.08 16 28 H 0.18 1.00 8.06 -2.91 -0.02 0.98 16 29 H 0.18 0.63 8.06 -2.91 -0.02 0.61 16 30 H 0.16 1.75 8.06 -2.91 -0.02 1.73 16 31 H 0.13 3.68 7.07 -2.91 -0.02 3.66 16 32 H 0.08 3.47 7.16 -2.38 -0.02 3.45 16 33 H 0.10 3.57 8.14 -2.39 -0.02 3.55 16 34 H 0.09 3.42 8.14 -2.39 -0.02 3.40 16 35 H 0.10 3.43 8.09 -2.39 -0.02 3.41 16 Total: -1.00 -74.11 307.36 4.35 -69.76 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: 0.93 Total: 10.91 kcal Atomic # 6 Polarization: -48.77 SS G_CDS: 3.69 Total: -45.08 kcal Atomic # 7 Polarization: -81.40 SS G_CDS: -0.88 Total: -82.29 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 1.72 Total: 47.19 kcal Atomic # 16 Polarization: 0.63 SS G_CDS: -1.11 Total: -0.48 kcal Total: -74.11 4.35 -69.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594888751.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.233 kcal (2) G-P(sol) polarization free energy of solvation -74.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds