Wall clock time and date at job start Tue Mar 31 2020 05:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86799 * 119.99835 * 2 1 4 4 H 1.48495 * 109.47205 * 274.41365 * 3 2 1 5 5 H 1.48499 * 109.47345 * 34.42162 * 3 2 1 6 6 H 1.48506 * 109.46957 * 154.41543 * 3 2 1 7 7 C 1.38807 * 120.00031 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00080 * 164.40545 * 7 2 1 9 9 N 1.36941 * 120.00066 * 344.40869 * 7 2 1 10 10 C 1.47066 * 121.12557 * 155.85548 * 9 7 2 11 11 C 1.52995 * 109.06826 * 115.16869 * 10 9 7 12 12 C 1.52312 * 109.18456 * 47.22001 * 11 10 9 13 13 N 1.32352 * 123.18597 * 161.08100 * 12 11 10 14 14 C 1.29725 * 118.03917 * 179.97438 * 13 12 11 15 15 C 1.47871 * 125.49588 * 179.91044 * 14 13 12 16 16 C 1.39554 * 120.14114 * 179.71899 * 15 14 13 17 17 C 1.37965 * 119.85403 * 179.97438 * 16 15 14 18 18 C 1.38349 * 120.14290 * 0.02562 * 17 16 15 19 19 C 1.38349 * 120.28964 * 359.97438 * 18 17 16 20 20 C 1.37966 * 120.14163 * 0.02562 * 19 18 17 21 21 S 1.76079 * 109.00415 * 359.64905 * 14 13 12 22 22 C 1.34829 * 122.72935 * 340.72007 * 12 11 10 23 23 C 1.47275 * 121.12206 * 335.82772 * 9 7 2 24 24 H 0.97006 * 119.99610 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.53646 * 235.04288 * 10 9 7 26 26 H 1.08997 * 109.54032 * 355.21225 * 10 9 7 27 27 H 1.09001 * 109.51531 * 167.12842 * 11 10 9 28 28 H 1.09003 * 109.51859 * 287.24359 * 11 10 9 29 29 H 1.08000 * 120.06738 * 0.02562 * 16 15 14 30 30 H 1.07997 * 119.92492 * 180.02562 * 17 16 15 31 31 H 1.08005 * 119.85330 * 179.72724 * 18 17 16 32 32 H 1.07996 * 119.92841 * 179.97438 * 19 18 17 33 33 H 1.07996 * 120.07105 * 180.02562 * 20 19 18 34 34 H 1.09005 * 109.84628 * 103.82915 * 23 9 7 35 35 H 1.09001 * 109.84850 * 342.84461 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4044 2.1003 -1.3959 5 1 1.4975 2.6239 0.7914 6 1 3.5914 1.4150 0.6046 7 6 2.0103 -1.2021 0.0005 8 1 3.0605 -1.2194 -0.2509 9 7 1.3634 -2.3661 0.3198 10 6 1.8610 -3.6667 -0.1531 11 6 2.2982 -4.5026 1.0515 12 6 1.2138 -4.4465 2.1196 13 7 1.1179 -5.3287 3.1016 14 6 0.1543 -5.1854 3.9582 15 6 -0.1072 -6.0717 5.1126 16 6 -1.1765 -5.8087 5.9699 17 6 -1.4153 -6.6398 7.0449 18 6 -0.5971 -7.7316 7.2743 19 6 0.4646 -7.9978 6.4282 20 6 0.7143 -7.1746 5.3496 21 16 -0.7876 -3.7611 3.5286 22 6 0.2691 -3.4850 2.1497 23 6 0.1462 -2.3578 1.1488 24 1 -0.4850 0.8401 -0.0004 25 1 1.0677 -4.1874 -0.6894 26 1 2.7104 -3.5121 -0.8184 27 1 2.4507 -5.5363 0.7413 28 1 3.2285 -4.1021 1.4543 29 1 -1.8161 -4.9569 5.7916 30 1 -2.2428 -6.4376 7.7088 31 1 -0.7857 -8.3766 8.1198 32 1 1.0998 -8.8515 6.6129 33 1 1.5431 -7.3837 4.6896 34 1 -0.7306 -2.5147 0.5205 35 1 0.0615 -1.4055 1.6724 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595713040.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:17 Heat of formation + Delta-G solvation = 72.819143 kcal Electronic energy + Delta-G solvation = -19179.825097 eV Core-core repulsion = 16269.088207 eV Total energy + Delta-G solvation = -2910.736890 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.083 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.97766 -39.84957 -37.80296 -34.45356 -32.88628 -31.91790 -31.69201 -30.70037 -27.37047 -25.63851 -24.87752 -23.74434 -23.17130 -21.80136 -19.86885 -19.00169 -18.40355 -17.39664 -16.93241 -16.45620 -16.23942 -15.70653 -15.59706 -15.19546 -15.00513 -14.76897 -14.38333 -14.34483 -13.85436 -13.61914 -13.30479 -13.16545 -12.88087 -12.70619 -12.50181 -12.30053 -12.21713 -12.01022 -11.83687 -11.64121 -10.82781 -10.69908 -10.39759 -10.12756 -9.91458 -8.99409 -8.91277 -7.98192 -5.40021 -0.69106 0.27352 0.45171 0.58262 0.71296 1.45804 1.47607 1.57429 1.83720 2.46394 2.84727 2.90132 3.22479 3.52369 3.83528 4.00207 4.07311 4.12196 4.23497 4.29244 4.45781 4.50535 4.53844 4.58394 4.85665 4.91678 4.92335 5.00775 5.07991 5.12677 5.32930 5.35169 5.51692 5.52377 5.56559 5.58506 6.00606 6.23043 6.70556 7.00157 7.68255 8.23679 9.12447 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.031671 B = 0.004008 C = 0.003759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.876261 B = 6983.867577 C = 7447.759266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.050 4.050 3 Si 0.972 3.028 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.270 1.270 7 C -0.264 4.264 8 H 0.079 0.921 9 N -0.607 5.607 10 C 0.142 3.858 11 C -0.045 4.045 12 C 0.051 3.949 13 N -0.479 5.479 14 C 0.100 3.900 15 C -0.045 4.045 16 C -0.110 4.110 17 C -0.116 4.116 18 C -0.100 4.100 19 C -0.120 4.120 20 C -0.090 4.090 21 S 0.087 5.913 22 C -0.233 4.233 23 C 0.262 3.738 24 H 0.253 0.747 25 H 0.030 0.970 26 H 0.081 0.919 27 H 0.097 0.903 28 H 0.074 0.926 29 H 0.126 0.874 30 H 0.157 0.843 31 H 0.161 0.839 32 H 0.154 0.846 33 H 0.124 0.876 34 H 0.025 0.975 35 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.800 -15.075 13.880 20.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.245 4.245 3 Si 0.800 3.200 4 H -0.208 1.208 5 H -0.219 1.219 6 H -0.195 1.195 7 C -0.394 4.394 8 H 0.096 0.904 9 N -0.331 5.331 10 C 0.016 3.984 11 C -0.087 4.087 12 C -0.079 4.079 13 N -0.192 5.192 14 C -0.176 4.176 15 C -0.049 4.049 16 C -0.131 4.131 17 C -0.134 4.134 18 C -0.119 4.119 19 C -0.138 4.138 20 C -0.112 4.112 21 S 0.344 5.656 22 C -0.355 4.355 23 C 0.134 3.866 24 H 0.062 0.938 25 H 0.048 0.952 26 H 0.100 0.900 27 H 0.116 0.884 28 H 0.093 0.907 29 H 0.144 0.856 30 H 0.175 0.825 31 H 0.178 0.822 32 H 0.172 0.828 33 H 0.142 0.858 34 H 0.042 0.958 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.419 -14.773 14.272 20.684 hybrid contribution 0.764 1.327 -1.085 1.877 sum -1.656 -13.446 13.187 18.906 Atomic orbital electron populations 1.70138 1.06642 1.26241 1.55384 1.25810 0.96199 1.01597 1.00880 0.85190 0.78062 0.79182 0.77607 1.20799 1.21862 1.19486 1.19572 0.92991 0.85193 1.41603 0.90368 1.44359 1.29527 1.02707 1.56481 1.21077 0.98158 0.85377 0.93800 1.20915 0.93946 1.01530 0.92311 1.21016 0.99026 0.91066 0.96819 1.66074 1.21105 1.28090 1.03931 1.25962 0.94840 0.97720 0.99078 1.18040 0.98879 0.95431 0.92535 1.21363 0.96006 1.00490 0.95201 1.21406 1.00702 0.94550 0.96744 1.21749 0.93729 0.96962 0.99473 1.21465 0.98641 0.99795 0.93919 1.21372 0.98419 0.93217 0.98172 1.84331 1.33053 1.25725 1.22447 1.27404 1.00746 1.04859 1.02535 1.19000 0.88745 0.91311 0.87514 0.93751 0.95203 0.90038 0.88447 0.90736 0.85647 0.82502 0.82166 0.82826 0.85819 0.95768 0.91444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.96 11.08 21.65 0.24 -54.72 16 2 C -0.05 -2.75 5.00 84.86 0.42 -2.32 16 3 Si 0.97 44.60 29.58 68.60 2.03 46.63 16 4 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 5 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 6 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 7 C -0.26 -14.48 9.67 84.03 0.81 -13.67 16 8 H 0.08 4.10 7.88 -2.91 -0.02 4.08 16 9 N -0.61 -31.30 2.99 -701.91 -2.10 -33.40 16 10 C 0.14 5.94 6.41 86.27 0.55 6.49 16 11 C -0.05 -1.71 6.45 30.36 0.20 -1.51 16 12 C 0.05 2.12 6.75 42.22 0.28 2.41 16 13 N -0.48 -18.53 10.09 -175.13 -1.77 -20.29 16 14 C 0.10 3.50 7.35 87.56 0.64 4.14 16 15 C -0.04 -1.26 5.87 -20.09 -0.12 -1.38 16 16 C -0.11 -2.49 9.61 22.52 0.22 -2.27 16 17 C -0.12 -1.85 10.03 22.23 0.22 -1.63 16 18 C -0.10 -1.37 10.04 22.32 0.22 -1.15 16 19 C -0.12 -2.02 10.03 22.23 0.22 -1.79 16 20 C -0.09 -2.19 9.68 22.52 0.22 -1.97 16 21 S 0.09 3.17 22.38 -56.49 -1.26 1.91 16 22 C -0.23 -10.33 6.47 25.07 0.16 -10.17 16 23 C 0.26 13.43 5.35 85.66 0.46 13.89 16 24 H 0.25 14.33 8.31 -92.70 -0.77 13.56 16 25 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.08 3.15 7.95 -2.39 -0.02 3.13 16 27 H 0.10 3.09 8.14 -2.39 -0.02 3.08 16 28 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 29 H 0.13 2.72 7.31 -2.91 -0.02 2.70 16 30 H 0.16 1.53 8.06 -2.91 -0.02 1.50 16 31 H 0.16 1.06 8.06 -2.91 -0.02 1.04 16 32 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 33 H 0.12 3.17 7.82 -2.91 -0.02 3.15 16 34 H 0.02 1.34 8.14 -2.38 -0.02 1.32 16 35 H 0.07 3.82 6.43 -2.39 -0.02 3.81 16 Total: -1.00 -66.45 308.61 2.76 -63.69 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: 1.10 Total: 7.12 kcal Atomic # 6 Polarization: -15.45 SS G_CDS: 4.52 Total: -10.93 kcal Atomic # 7 Polarization: -104.78 SS G_CDS: -3.63 Total: -108.41 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Atomic # 16 Polarization: 3.17 SS G_CDS: -1.26 Total: 1.91 kcal Total: -66.45 2.76 -63.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595713040.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.507 kcal (2) G-P(sol) polarization free energy of solvation -66.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds