Wall clock time and date at job start Tue Mar 31 2020 06:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.30015 * 127.33672 * 2 1 4 4 O 1.20651 * 112.32205 * 180.28932 * 3 2 1 5 5 C 1.33521 * 113.15807 * 359.72562 * 4 3 2 6 6 C 1.50701 * 126.83617 * 180.02562 * 5 4 3 7 7 F 1.39899 * 109.47056 * 30.00278 * 6 5 4 8 8 F 1.39894 * 109.47248 * 150.00348 * 6 5 4 9 9 C 1.37423 * 106.33011 * 0.02562 * 5 4 3 10 10 C 1.47314 * 128.57071 * 179.97438 * 9 5 4 11 11 O 1.21638 * 119.99958 * 90.00458 * 10 9 5 12 12 N 1.34774 * 120.00341 * 269.99740 * 10 9 5 13 13 C 1.36967 * 120.00425 * 180.02562 * 12 10 9 14 14 H 1.08005 * 119.99888 * 222.16972 * 13 12 10 15 15 C 1.38979 * 119.99901 * 42.44233 * 13 12 10 16 16 N 1.31410 * 120.00179 * 19.26939 * 15 13 12 17 17 Si 1.86808 * 120.00043 * 199.26184 * 15 13 12 18 18 H 1.48498 * 109.46914 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47034 * 120.00290 * 17 15 13 20 20 H 1.48500 * 109.46947 * 240.00422 * 17 15 13 21 21 C 1.46502 * 119.99575 * 0.02562 * 12 10 9 22 22 C 1.53007 * 117.49662 * 183.39463 * 21 12 10 23 23 C 1.53000 * 117.49916 * 114.73854 * 21 12 10 24 24 H 1.09004 * 109.47043 * 270.13838 * 1 2 3 25 25 H 1.09005 * 109.47534 * 30.13378 * 1 2 3 26 26 H 1.08997 * 109.47375 * 150.13360 * 1 2 3 27 27 H 1.09000 * 109.47494 * 270.00735 * 6 5 4 28 28 H 0.96993 * 120.00289 * 174.73755 * 16 15 13 29 29 H 1.09001 * 115.55168 * 329.06371 * 21 12 10 30 30 H 1.08999 * 117.50018 * 0.02562 * 22 21 12 31 31 H 1.09002 * 117.49395 * 145.01957 * 22 21 12 32 32 H 1.09005 * 117.49610 * 214.97959 * 23 21 12 33 33 H 1.09000 * 117.50032 * 359.97178 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7212 -0.0056 5 6 3.6499 -0.6006 -0.0046 6 6 4.9719 -1.3241 -0.0098 7 9 5.9325 -0.5450 0.6439 8 9 4.8357 -2.5490 0.6521 9 6 2.3992 -1.1699 0.0023 10 6 2.0404 -2.5987 0.0057 11 8 1.8974 -3.1874 1.0605 12 7 1.8704 -3.2536 -1.1599 13 6 1.5363 -4.5819 -1.1568 14 1 2.0102 -5.2595 -1.8516 15 6 0.5833 -5.0566 -0.2635 16 7 -0.2599 -4.2226 0.3025 17 14 0.5010 -6.8804 0.1326 18 1 1.5524 -7.6004 -0.6298 19 1 0.7199 -7.0813 1.5875 20 1 -0.8345 -7.4090 -0.2448 21 6 2.0429 -2.5446 -2.4303 22 6 1.7587 -3.3218 -3.7173 23 6 3.2001 -2.9807 -3.3312 24 1 -0.3633 0.0025 1.0277 25 1 -0.3634 0.8888 -0.5159 26 1 -0.3634 -0.8911 -0.5117 27 1 5.2858 -1.5000 -1.0387 28 1 -0.9728 -4.5617 0.8660 29 1 1.7883 -1.4849 -2.4157 30 1 1.4430 -4.3604 -3.6188 31 1 1.3174 -2.7732 -4.5494 32 1 3.7066 -2.2079 -3.9095 33 1 3.8334 -3.7948 -2.9785 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610431404.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:02 Heat of formation + Delta-G solvation = -26.684392 kcal Electronic energy + Delta-G solvation = -23900.101243 eV Core-core repulsion = 19988.067155 eV Total energy + Delta-G solvation = -3912.034088 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.092 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.91541 -46.92779 -44.55974 -38.66016 -36.20450 -34.20274 -32.99056 -32.47341 -30.93752 -28.42693 -26.83372 -25.44720 -23.42826 -21.85006 -21.28246 -20.45063 -19.63018 -18.09002 -17.78101 -16.99213 -16.89749 -16.67543 -16.23041 -15.09204 -14.80106 -14.52049 -13.87421 -13.74657 -13.36437 -13.28583 -13.15201 -13.03419 -12.93783 -12.51785 -12.41906 -12.05885 -11.34920 -11.31222 -11.10302 -11.03109 -10.93223 -10.63966 -10.24510 -10.14031 -9.89982 -9.59078 -9.33268 -8.91183 -8.31803 -7.22289 -6.25683 -4.00012 1.42511 2.25905 2.70748 3.23209 3.34012 3.36562 3.68187 3.90289 4.09805 4.20340 4.34329 4.56794 4.67187 4.81566 4.99399 5.11102 5.20030 5.44740 5.51841 5.55520 5.65462 5.84263 5.89112 5.96127 6.02386 6.08340 6.30629 6.47919 6.59469 6.79708 7.49452 8.10068 8.41084 8.85537 8.96117 9.45994 10.06418 10.83039 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.016642 B = 0.007387 C = 0.007083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.074808 B = 3789.735042 C = 3952.443540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.044 3.956 3 N -0.354 5.354 4 O 0.111 5.889 5 C -0.117 4.117 6 C 0.370 3.630 7 F -0.193 7.193 8 F -0.167 7.167 9 C -0.140 4.140 10 C 0.542 3.458 11 O -0.506 6.506 12 N -0.409 5.409 13 C -0.348 4.348 14 H 0.085 0.915 15 C 0.073 3.927 16 N -0.826 5.826 17 Si 0.915 3.085 18 H -0.270 1.270 19 H -0.279 1.279 20 H -0.285 1.285 21 C 0.069 3.931 22 C -0.167 4.167 23 C -0.209 4.209 24 H 0.083 0.917 25 H 0.074 0.926 26 H 0.096 0.904 27 H 0.140 0.860 28 H 0.267 0.733 29 H 0.098 0.902 30 H 0.110 0.890 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.403 6.079 -5.822 10.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.117 4.117 3 N -0.057 5.057 4 O 0.044 5.956 5 C -0.180 4.180 6 C 0.315 3.685 7 F -0.174 7.174 8 F -0.148 7.148 9 C -0.148 4.148 10 C 0.327 3.673 11 O -0.382 6.382 12 N -0.129 5.129 13 C -0.474 4.474 14 H 0.102 0.898 15 C -0.138 4.138 16 N -0.459 5.459 17 Si 0.741 3.259 18 H -0.194 1.194 19 H -0.205 1.205 20 H -0.211 1.211 21 C -0.037 4.037 22 C -0.205 4.205 23 C -0.248 4.248 24 H 0.101 0.899 25 H 0.093 0.907 26 H 0.115 0.885 27 H 0.157 0.843 28 H 0.077 0.923 29 H 0.116 0.884 30 H 0.128 0.872 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 5.008 7.073 -5.024 10.017 hybrid contribution -0.258 -1.449 0.322 1.507 sum 4.749 5.624 -4.702 8.734 Atomic orbital electron populations 1.20206 0.84763 1.04120 1.03961 1.24974 0.98981 0.86542 1.01207 1.73504 0.89229 1.23546 1.19466 1.84495 1.21506 1.21228 1.68396 1.24923 0.97303 0.85498 1.10315 1.19391 0.79840 0.75128 0.94110 1.93031 1.64831 1.75329 1.84196 1.93176 1.95646 1.42585 1.83369 1.22972 0.90687 0.98105 1.03005 1.16420 0.83331 0.82269 0.85274 1.90700 1.50902 1.66261 1.30304 1.42602 1.60643 1.09125 1.00490 1.18934 1.23276 0.81903 1.23335 0.89785 1.25246 0.93770 0.98920 0.95901 1.69810 1.12613 1.35336 1.28104 0.86110 0.77644 0.83192 0.78911 1.19409 1.20500 1.21092 1.21681 1.01837 0.95278 0.84891 1.23079 0.97529 1.02831 0.97050 1.23375 0.92305 1.03958 1.05176 0.89864 0.90735 0.88543 0.84269 0.92336 0.88395 0.87186 0.89627 0.89645 0.88732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.23 10.49 36.00 0.38 -0.85 16 2 C 0.04 0.84 7.52 -79.76 -0.60 0.24 16 3 N -0.35 -6.44 12.01 34.79 0.42 -6.02 16 4 O 0.11 1.93 11.06 18.58 0.21 2.14 16 5 C -0.12 -2.09 7.14 -34.60 -0.25 -2.34 16 6 C 0.37 5.68 5.81 36.01 0.21 5.89 16 7 F -0.19 -2.86 17.32 2.25 0.04 -2.82 16 8 F -0.17 -3.20 16.11 2.25 0.04 -3.17 16 9 C -0.14 -2.93 4.50 -102.90 -0.46 -3.40 16 10 C 0.54 13.49 5.74 -12.57 -0.07 13.42 16 11 O -0.51 -14.87 14.72 5.24 0.08 -14.79 16 12 N -0.41 -9.70 2.85 -108.96 -0.31 -10.01 16 13 C -0.35 -8.95 8.00 -14.98 -0.12 -9.07 16 14 H 0.08 2.07 7.17 -52.48 -0.38 1.70 16 15 C 0.07 1.96 4.35 -17.46 -0.08 1.88 16 16 N -0.83 -23.12 11.64 55.50 0.65 -22.48 16 17 Si 0.91 21.06 29.60 -169.99 -5.03 16.03 16 18 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 C 0.07 1.32 5.89 -67.93 -0.40 0.92 16 22 C -0.17 -2.79 9.79 -26.69 -0.26 -3.05 16 23 C -0.21 -3.26 10.36 -26.69 -0.28 -3.54 16 24 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 25 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 26 H 0.10 1.79 8.14 -51.93 -0.42 1.37 16 27 H 0.14 1.54 8.14 -51.93 -0.42 1.12 16 28 H 0.27 7.15 8.32 -40.82 -0.34 6.81 16 29 H 0.10 1.78 7.26 -51.93 -0.38 1.41 16 30 H 0.11 2.01 6.68 -51.93 -0.35 1.67 16 31 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 LS Contribution 302.63 15.07 4.56 4.56 Total: -1.00 -31.61 302.63 -4.48 -36.09 By element: Atomic # 1 Polarization: 3.55 SS G_CDS: -3.19 Total: 0.36 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: -1.93 Total: 0.11 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: 0.75 Total: -38.50 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: 0.28 Total: -12.66 kcal Atomic # 9 Polarization: -6.06 SS G_CDS: 0.08 Total: -5.99 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.03 Total: 16.03 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.61 -4.48 -36.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610431404.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.410 kcal (2) G-P(sol) polarization free energy of solvation -31.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds