Wall clock time and date at job start Tue Mar 31 2020 06:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.30015 * 127.33672 * 2 1 4 4 O 1.20651 * 112.32205 * 180.28932 * 3 2 1 5 5 C 1.33521 * 113.15807 * 359.72562 * 4 3 2 6 6 C 1.50701 * 126.83617 * 180.02562 * 5 4 3 7 7 F 1.39899 * 109.47056 * 30.00278 * 6 5 4 8 8 F 1.39894 * 109.47248 * 150.00348 * 6 5 4 9 9 C 1.37423 * 106.33011 * 0.02562 * 5 4 3 10 10 C 1.47314 * 128.57071 * 179.97438 * 9 5 4 11 11 O 1.21638 * 119.99958 * 90.00458 * 10 9 5 12 12 N 1.34774 * 120.00341 * 269.99740 * 10 9 5 13 13 C 1.36967 * 120.00425 * 180.02562 * 12 10 9 14 14 H 1.08005 * 119.99888 * 222.16972 * 13 12 10 15 15 C 1.38979 * 119.99901 * 42.44233 * 13 12 10 16 16 N 1.31410 * 120.00179 * 19.26939 * 15 13 12 17 17 Si 1.86808 * 120.00043 * 199.26184 * 15 13 12 18 18 H 1.48498 * 109.46914 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47034 * 120.00290 * 17 15 13 20 20 H 1.48500 * 109.46947 * 240.00422 * 17 15 13 21 21 C 1.46502 * 119.99575 * 0.02562 * 12 10 9 22 22 C 1.53007 * 117.49662 * 183.39463 * 21 12 10 23 23 C 1.53000 * 117.49916 * 114.73854 * 21 12 10 24 24 H 1.09004 * 109.47043 * 270.13838 * 1 2 3 25 25 H 1.09005 * 109.47534 * 30.13378 * 1 2 3 26 26 H 1.08997 * 109.47375 * 150.13360 * 1 2 3 27 27 H 1.09000 * 109.47494 * 270.00735 * 6 5 4 28 28 H 0.96993 * 120.00289 * 174.73755 * 16 15 13 29 29 H 1.09001 * 115.55168 * 329.06371 * 21 12 10 30 30 H 1.08999 * 117.50018 * 0.02562 * 22 21 12 31 31 H 1.09002 * 117.49395 * 145.01957 * 22 21 12 32 32 H 1.09005 * 117.49610 * 214.97959 * 23 21 12 33 33 H 1.09000 * 117.50032 * 359.97178 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7212 -0.0056 5 6 3.6499 -0.6006 -0.0046 6 6 4.9719 -1.3241 -0.0098 7 9 5.9325 -0.5450 0.6439 8 9 4.8357 -2.5490 0.6521 9 6 2.3992 -1.1699 0.0023 10 6 2.0404 -2.5987 0.0057 11 8 1.8974 -3.1874 1.0605 12 7 1.8704 -3.2536 -1.1599 13 6 1.5363 -4.5819 -1.1568 14 1 2.0102 -5.2595 -1.8516 15 6 0.5833 -5.0566 -0.2635 16 7 -0.2599 -4.2226 0.3025 17 14 0.5010 -6.8804 0.1326 18 1 1.5524 -7.6004 -0.6298 19 1 0.7199 -7.0813 1.5875 20 1 -0.8345 -7.4090 -0.2448 21 6 2.0429 -2.5446 -2.4303 22 6 1.7587 -3.3218 -3.7173 23 6 3.2001 -2.9807 -3.3312 24 1 -0.3633 0.0025 1.0277 25 1 -0.3634 0.8888 -0.5159 26 1 -0.3634 -0.8911 -0.5117 27 1 5.2858 -1.5000 -1.0387 28 1 -0.9728 -4.5617 0.8660 29 1 1.7883 -1.4849 -2.4157 30 1 1.4430 -4.3604 -3.6188 31 1 1.3174 -2.7732 -4.5494 32 1 3.7066 -2.2079 -3.9095 33 1 3.8334 -3.7948 -2.9785 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610431404.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:01 Heat of formation + Delta-G solvation = -46.064027 kcal Electronic energy + Delta-G solvation = -23900.941607 eV Core-core repulsion = 19988.067155 eV Total energy + Delta-G solvation = -3912.874452 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.092 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.20118 -48.23114 -46.03248 -40.40267 -37.82361 -35.70747 -34.81414 -34.00210 -32.75732 -29.83590 -28.32215 -27.15845 -25.06986 -23.16652 -22.82012 -21.93548 -21.25603 -19.58800 -19.22568 -18.36507 -18.26248 -18.13438 -17.92024 -16.73639 -16.57467 -16.12493 -15.57602 -15.07827 -14.90175 -14.80580 -14.51664 -14.47652 -14.37669 -14.02887 -13.81982 -13.76466 -13.06696 -12.86687 -12.79378 -12.60837 -12.40017 -12.21855 -12.05708 -11.72765 -11.29598 -11.03025 -10.87687 -10.79872 -10.18935 -9.08109 -8.24140 -6.00589 -0.03892 0.74626 1.29453 1.38703 1.46747 1.53588 1.95549 2.30503 2.62603 2.75114 2.95096 3.07865 3.10883 3.28691 3.54064 3.69572 3.77300 4.03752 4.09313 4.11269 4.24977 4.43062 4.49211 4.51568 4.64256 4.88694 4.99045 5.08478 5.25465 5.45775 5.50546 6.15511 6.93823 6.95111 7.08911 7.56786 8.20775 8.84299 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.016642 B = 0.007387 C = 0.007083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.074808 B = 3789.735042 C = 3952.443540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.039 3.961 3 N -0.351 5.351 4 O 0.124 5.876 5 C -0.093 4.093 6 C 0.368 3.632 7 F -0.187 7.187 8 F -0.192 7.192 9 C -0.176 4.176 10 C 0.541 3.459 11 O -0.569 6.569 12 N -0.416 5.416 13 C -0.354 4.354 14 H 0.091 0.909 15 C 0.024 3.976 16 N -0.860 5.860 17 Si 0.968 3.032 18 H -0.254 1.254 19 H -0.299 1.299 20 H -0.272 1.272 21 C 0.035 3.965 22 C -0.163 4.163 23 C -0.176 4.176 24 H 0.083 0.917 25 H 0.107 0.893 26 H 0.072 0.928 27 H 0.195 0.805 28 H 0.262 0.738 29 H 0.106 0.894 30 H 0.089 0.911 31 H 0.116 0.884 32 H 0.127 0.873 33 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.825 6.988 -7.913 12.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.121 4.121 3 N -0.054 5.054 4 O 0.057 5.943 5 C -0.158 4.158 6 C 0.314 3.686 7 F -0.168 7.168 8 F -0.173 7.173 9 C -0.184 4.184 10 C 0.327 3.673 11 O -0.449 6.449 12 N -0.134 5.134 13 C -0.481 4.481 14 H 0.108 0.892 15 C -0.184 4.184 16 N -0.495 5.495 17 Si 0.793 3.207 18 H -0.178 1.178 19 H -0.226 1.226 20 H -0.198 1.198 21 C -0.070 4.070 22 C -0.200 4.200 23 C -0.215 4.215 24 H 0.101 0.899 25 H 0.126 0.874 26 H 0.091 0.909 27 H 0.211 0.789 28 H 0.071 0.929 29 H 0.124 0.876 30 H 0.107 0.893 31 H 0.134 0.866 32 H 0.145 0.855 33 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 6.438 7.995 -7.186 12.530 hybrid contribution -0.619 -1.650 0.913 1.985 sum 5.819 6.345 -6.273 10.652 Atomic orbital electron populations 1.20200 0.83746 1.04505 1.04090 1.25183 0.99784 0.86056 1.01127 1.73491 0.89287 1.23015 1.19583 1.84501 1.21237 1.20849 1.67690 1.25326 0.97621 0.85321 1.07506 1.20034 0.78668 0.73705 0.96188 1.93043 1.64252 1.75103 1.84437 1.93133 1.95718 1.44277 1.84179 1.22592 0.92569 0.96698 1.06547 1.16772 0.82222 0.83561 0.84695 1.90644 1.53739 1.68179 1.32387 1.42748 1.59653 1.08913 1.02134 1.19202 1.22573 0.83427 1.22913 0.89184 1.26034 0.93888 1.02416 0.96057 1.69914 1.13455 1.36802 1.29290 0.85279 0.78543 0.79425 0.77409 1.17776 1.22574 1.19795 1.21896 1.05870 0.95580 0.83624 1.23148 0.98840 1.01654 0.96406 1.23431 0.91389 1.04050 1.02594 0.89889 0.87424 0.90904 0.78901 0.92917 0.87649 0.89280 0.86624 0.85537 0.89529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.27 10.49 71.23 0.75 -1.52 16 2 C 0.04 1.47 7.52 45.16 0.34 1.81 16 3 N -0.35 -12.10 12.01 -44.73 -0.54 -12.64 16 4 O 0.12 4.04 11.06 76.75 0.85 4.88 16 5 C -0.09 -3.17 7.14 25.49 0.18 -2.99 16 6 C 0.37 10.35 5.81 71.24 0.41 10.77 16 7 F -0.19 -5.05 17.32 44.97 0.78 -4.27 16 8 F -0.19 -7.23 16.11 44.97 0.72 -6.50 16 9 C -0.18 -7.32 4.50 -18.75 -0.08 -7.41 16 10 C 0.54 27.41 5.74 86.63 0.50 27.91 16 11 O -0.57 -34.80 14.72 -4.15 -0.06 -34.86 16 12 N -0.42 -19.81 2.85 -616.89 -1.76 -21.56 16 13 C -0.35 -18.39 8.00 84.07 0.67 -17.72 16 14 H 0.09 4.44 7.17 -2.91 -0.02 4.41 16 15 C 0.02 1.29 4.35 84.93 0.37 1.66 16 16 N -0.86 -50.03 11.64 21.67 0.25 -49.78 16 17 Si 0.97 44.08 29.60 68.60 2.03 46.11 16 18 H -0.25 -10.77 7.11 99.48 0.71 -10.06 16 19 H -0.30 -14.44 7.11 99.48 0.71 -13.74 16 20 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 21 C 0.04 1.27 5.89 44.99 0.26 1.54 16 22 C -0.16 -5.03 9.79 30.62 0.30 -4.73 16 23 C -0.18 -4.85 10.36 30.62 0.32 -4.54 16 24 H 0.08 2.75 8.14 -2.38 -0.02 2.73 16 25 H 0.11 2.79 8.14 -2.38 -0.02 2.77 16 26 H 0.07 2.78 8.14 -2.39 -0.02 2.77 16 27 H 0.19 3.40 8.14 -2.39 -0.02 3.38 16 28 H 0.26 14.68 8.32 -92.71 -0.77 13.91 16 29 H 0.11 3.65 7.26 -2.39 -0.02 3.63 16 30 H 0.09 3.15 6.68 -2.39 -0.02 3.13 16 31 H 0.12 2.85 8.14 -2.39 -0.02 2.83 16 32 H 0.13 2.50 8.14 -2.38 -0.02 2.48 16 33 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 Total: -1.00 -71.51 302.63 7.46 -64.05 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: 1.16 Total: 9.79 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: 4.02 Total: 4.78 kcal Atomic # 7 Polarization: -81.93 SS G_CDS: -2.04 Total: -83.97 kcal Atomic # 8 Polarization: -30.77 SS G_CDS: 0.79 Total: -29.98 kcal Atomic # 9 Polarization: -12.28 SS G_CDS: 1.50 Total: -10.78 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -71.51 7.46 -64.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610431404.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.989 kcal (2) G-P(sol) polarization free energy of solvation -71.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds