Wall clock time and date at job start Tue Mar 31 2020 06:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38848 * 119.98353 * 2 1 4 4 C 1.38531 * 118.04217 * 179.97438 * 3 2 1 5 5 C 1.39544 * 117.90575 * 0.02562 * 4 3 2 6 6 S 1.76201 * 120.16384 * 180.02562 * 5 4 3 7 7 C 1.81401 * 102.99762 * 179.97438 * 6 5 4 8 8 C 1.50704 * 109.46796 * 180.02562 * 7 6 5 9 9 C 1.38639 * 119.74939 * 90.00095 * 8 7 6 10 10 C 1.37620 * 120.24897 * 180.27710 * 9 8 7 11 11 C 1.40715 * 119.74131 * 359.51904 * 10 9 8 12 12 C 1.41399 * 120.24183 * 180.22985 * 11 10 9 13 13 H 1.07996 * 120.00044 * 204.52621 * 12 11 10 14 14 C 1.39950 * 119.99773 * 24.53568 * 12 11 10 15 15 N 1.30821 * 119.99991 * 17.71280 * 14 12 11 16 16 Si 1.86800 * 119.99756 * 197.70913 * 14 12 11 17 17 H 1.48506 * 109.46742 * 59.99979 * 16 14 12 18 18 H 1.48505 * 109.46999 * 179.97438 * 16 14 12 19 19 H 1.48491 * 109.47336 * 300.00007 * 16 14 12 20 20 C 1.40715 * 119.51261 * 0.47567 * 11 10 9 21 21 C 1.37609 * 119.74608 * 359.75586 * 20 11 10 22 22 N 1.32555 * 119.67341 * 0.27453 * 5 4 3 23 23 N 1.28347 * 122.05675 * 359.39995 * 22 5 4 24 24 H 1.09005 * 109.47226 * 90.00292 * 1 2 3 25 25 H 1.09006 * 109.46879 * 209.99591 * 1 2 3 26 26 H 1.09000 * 109.47521 * 329.99677 * 1 2 3 27 27 H 1.08001 * 120.97464 * 0.02562 * 3 2 1 28 28 H 1.08002 * 121.04335 * 180.02562 * 4 3 2 29 29 H 1.08993 * 109.47418 * 60.00131 * 7 6 5 30 30 H 1.09002 * 109.46995 * 299.99405 * 7 6 5 31 31 H 1.08000 * 119.87572 * 359.97438 * 9 8 7 32 32 H 1.07993 * 120.12561 * 179.72165 * 10 9 8 33 33 H 0.97005 * 119.99803 * 180.02562 * 15 14 12 34 34 H 1.08000 * 120.12510 * 179.73128 * 20 11 10 35 35 H 1.08002 * 119.87647 * 179.97438 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2009 1.2027 0.0000 4 6 3.5854 1.1557 0.0005 5 6 4.1963 -0.0989 0.0005 6 16 5.9536 -0.2279 0.0019 7 6 6.2311 -2.0206 0.0021 8 6 7.7121 -2.2996 0.0039 9 6 8.3866 -2.4270 1.2084 10 6 9.7400 -2.6762 1.2220 11 6 10.4372 -2.8116 0.0072 12 6 11.8269 -3.0725 0.0089 13 1 12.4296 -2.7938 -0.8427 14 6 12.4212 -3.6920 1.1142 15 7 11.6809 -4.3362 1.9794 16 14 14.2714 -3.5991 1.3540 17 1 14.6841 -2.1777 1.4744 18 1 14.6475 -4.3298 2.5909 19 1 14.9532 -4.2154 0.1877 20 6 9.7421 -2.6803 -1.2092 21 6 8.3897 -2.4264 -1.1989 22 7 3.4482 -1.1931 -0.0056 23 7 2.1658 -1.1415 -0.0001 24 1 -0.3634 -0.0001 -1.0277 25 1 -0.3633 -0.8901 0.5138 26 1 -0.3634 0.8899 0.5139 27 1 1.6766 2.1469 0.0004 28 1 4.1734 2.0617 0.0010 29 1 5.7796 -2.4582 -0.8881 30 1 5.7782 -2.4581 0.8919 31 1 7.8489 -2.3255 2.1395 32 1 10.2643 -2.7706 2.1614 33 1 12.0929 -4.7652 2.7457 34 1 10.2682 -2.7781 -2.1473 35 1 7.8542 -2.3249 -2.1313 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712445172.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:44 Heat of formation + Delta-G solvation = 56.763811 kcal Electronic energy + Delta-G solvation = -18227.122537 eV Core-core repulsion = 15315.689436 eV Total energy + Delta-G solvation = -2911.433101 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.083 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.88348 -37.69948 -34.11015 -33.99418 -33.13134 -31.30093 -29.38886 -28.54525 -27.51987 -24.75931 -24.08788 -23.04685 -21.09209 -20.14176 -18.04378 -17.43841 -17.39870 -15.82831 -15.43057 -15.31899 -14.76540 -14.40719 -14.01111 -13.92007 -13.44885 -13.30381 -13.24261 -12.64376 -12.55606 -12.19962 -12.03035 -11.73902 -11.46636 -11.14056 -10.95285 -10.77036 -10.51981 -10.44746 -10.23858 -10.14724 -9.75436 -9.65331 -9.48376 -9.19833 -7.58758 -7.43875 -7.39208 -6.88047 -4.45578 0.72538 0.76555 1.51244 2.41167 2.87224 2.99919 3.01827 3.04107 3.28142 3.40429 3.84631 4.11613 4.40852 4.51279 4.55298 4.67160 4.89219 5.20777 5.27897 5.49779 5.59781 5.61509 5.62691 5.74468 5.89835 6.06259 6.24682 6.26186 6.32356 6.86843 6.96011 7.16639 7.24870 7.50661 7.73337 7.94475 7.99313 8.17858 8.52357 8.63940 8.76980 8.85352 10.05427 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.052588 B = 0.002800 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.311706 B = 9996.713686 C =10049.992673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.045 3.955 3 C -0.105 4.105 4 C -0.104 4.104 5 C 0.054 3.946 6 S -0.068 6.068 7 C -0.013 4.013 8 C -0.220 4.220 9 C -0.077 4.077 10 C -0.168 4.168 11 C 0.118 3.882 12 C -0.453 4.453 13 H 0.080 0.920 14 C 0.075 3.925 15 N -0.784 5.784 16 Si 0.911 3.089 17 H -0.262 1.262 18 H -0.277 1.277 19 H -0.264 1.264 20 C -0.228 4.228 21 C -0.064 4.064 22 N -0.250 5.250 23 N -0.233 5.233 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.150 0.850 28 H 0.152 0.848 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.120 0.880 33 H 0.284 0.716 34 H 0.095 0.905 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.058 9.425 -1.310 16.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.104 4.104 3 C -0.135 4.135 4 C -0.138 4.138 5 C -0.201 4.201 6 S 0.177 5.823 7 C -0.160 4.160 8 C -0.225 4.225 9 C -0.097 4.097 10 C -0.188 4.188 11 C 0.115 3.885 12 C -0.483 4.483 13 H 0.098 0.902 14 C -0.144 4.144 15 N -0.409 5.409 16 Si 0.735 3.265 17 H -0.187 1.187 18 H -0.202 1.202 19 H -0.189 1.189 20 C -0.248 4.248 21 C -0.085 4.085 22 N -0.096 5.096 23 N -0.076 5.076 24 H 0.098 0.902 25 H 0.098 0.902 26 H 0.095 0.905 27 H 0.168 0.832 28 H 0.169 0.831 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.108 0.892 32 H 0.138 0.862 33 H 0.095 0.905 34 H 0.113 0.887 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -13.270 8.453 -1.091 15.772 hybrid contribution -0.067 0.596 0.174 0.625 sum -13.337 9.050 -0.917 16.143 Atomic orbital electron populations 1.20610 0.87689 1.03751 1.03306 1.22763 0.98886 0.90523 0.98267 1.22151 0.94222 0.99727 0.97406 1.22033 0.95082 0.98079 0.98609 1.25300 1.03105 0.93621 0.98043 1.86229 0.91107 1.16323 1.88667 1.22197 0.98486 0.90022 1.05267 1.18417 0.91264 1.18552 0.94242 1.20545 0.94867 0.99162 0.95101 1.21300 0.92938 1.05722 0.98811 1.17687 0.93041 0.86812 0.90967 1.19667 0.93321 1.33440 1.01851 0.90159 1.25981 1.01041 0.92665 0.94751 1.69815 1.38326 1.22153 1.10566 0.86321 0.81938 0.79683 0.78582 1.18669 1.20219 1.18865 1.20953 0.93494 1.13221 0.97119 1.20393 0.94419 0.98437 0.95217 1.73610 0.99151 1.24903 1.11959 1.72728 1.01755 1.25005 1.08125 0.90192 0.90160 0.90540 0.83236 0.83051 0.89838 0.89776 0.89182 0.86244 0.90526 0.88692 0.89160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.70 10.19 36.00 0.37 -0.33 16 2 C 0.05 0.52 6.87 -82.38 -0.57 -0.04 16 3 C -0.10 -1.04 9.86 -39.25 -0.39 -1.42 16 4 C -0.10 -1.24 9.97 -38.99 -0.39 -1.63 16 5 C 0.05 0.83 7.08 -16.75 -0.12 0.72 16 6 S -0.07 -1.13 21.91 -107.50 -2.36 -3.49 16 7 C -0.01 -0.25 5.35 36.01 0.19 -0.05 16 8 C -0.22 -4.74 5.16 -104.33 -0.54 -5.28 16 9 C -0.08 -1.76 9.67 -39.66 -0.38 -2.14 16 10 C -0.17 -4.26 8.70 -38.87 -0.34 -4.60 16 11 C 0.12 3.07 5.57 -106.82 -0.60 2.48 16 12 C -0.45 -11.66 9.06 -37.74 -0.34 -12.00 16 13 H 0.08 1.97 7.91 -52.49 -0.41 1.56 16 14 C 0.07 1.82 5.14 -17.34 -0.09 1.73 16 15 N -0.78 -19.69 10.95 55.55 0.61 -19.08 16 16 Si 0.91 18.05 29.59 -169.99 -5.03 13.02 16 17 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 18 H -0.28 -5.36 7.11 56.52 0.40 -4.95 16 19 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 20 C -0.23 -5.47 9.80 -38.88 -0.38 -5.85 16 21 C -0.06 -1.42 9.67 -39.66 -0.38 -1.80 16 22 N -0.25 -4.27 10.61 31.49 0.33 -3.94 16 23 N -0.23 -3.62 11.41 33.62 0.38 -3.23 16 24 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.08 0.37 8.09 -51.93 -0.42 -0.05 16 27 H 0.15 0.87 8.06 -52.49 -0.42 0.44 16 28 H 0.15 1.42 8.06 -52.49 -0.42 1.00 16 29 H 0.08 1.53 8.08 -51.93 -0.42 1.11 16 30 H 0.08 1.56 8.08 -51.92 -0.42 1.14 16 31 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 32 H 0.12 3.12 6.16 -52.49 -0.32 2.79 16 33 H 0.28 6.47 8.30 -40.82 -0.34 6.13 16 34 H 0.09 2.14 8.06 -52.49 -0.42 1.71 16 35 H 0.09 1.78 8.06 -52.49 -0.42 1.35 16 LS Contribution 321.07 15.07 4.84 4.84 Total: -1.00 -28.40 321.07 -9.26 -37.66 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -4.09 Total: 4.44 kcal Atomic # 6 Polarization: -26.27 SS G_CDS: -3.95 Total: -30.22 kcal Atomic # 7 Polarization: -27.58 SS G_CDS: 1.33 Total: -26.25 kcal Atomic # 14 Polarization: 18.05 SS G_CDS: -5.03 Total: 13.02 kcal Atomic # 16 Polarization: -1.13 SS G_CDS: -2.36 Total: -3.49 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -28.40 -9.26 -37.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712445172.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.423 kcal (2) G-P(sol) polarization free energy of solvation -28.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds