Wall clock time and date at job start Tue Mar 31 2020 06:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38848 * 119.98353 * 2 1 4 4 C 1.38531 * 118.04217 * 179.97438 * 3 2 1 5 5 C 1.39544 * 117.90575 * 0.02562 * 4 3 2 6 6 S 1.76201 * 120.16384 * 180.02562 * 5 4 3 7 7 C 1.81401 * 102.99762 * 179.97438 * 6 5 4 8 8 C 1.50704 * 109.46796 * 180.02562 * 7 6 5 9 9 C 1.38639 * 119.74939 * 90.00095 * 8 7 6 10 10 C 1.37620 * 120.24897 * 180.27710 * 9 8 7 11 11 C 1.40715 * 119.74131 * 359.51904 * 10 9 8 12 12 C 1.41399 * 120.24183 * 180.22985 * 11 10 9 13 13 H 1.07996 * 120.00044 * 204.52621 * 12 11 10 14 14 C 1.39950 * 119.99773 * 24.53568 * 12 11 10 15 15 N 1.30821 * 119.99991 * 17.71280 * 14 12 11 16 16 Si 1.86800 * 119.99756 * 197.70913 * 14 12 11 17 17 H 1.48506 * 109.46742 * 59.99979 * 16 14 12 18 18 H 1.48505 * 109.46999 * 179.97438 * 16 14 12 19 19 H 1.48491 * 109.47336 * 300.00007 * 16 14 12 20 20 C 1.40715 * 119.51261 * 0.47567 * 11 10 9 21 21 C 1.37609 * 119.74608 * 359.75586 * 20 11 10 22 22 N 1.32555 * 119.67341 * 0.27453 * 5 4 3 23 23 N 1.28347 * 122.05675 * 359.39995 * 22 5 4 24 24 H 1.09005 * 109.47226 * 90.00292 * 1 2 3 25 25 H 1.09006 * 109.46879 * 209.99591 * 1 2 3 26 26 H 1.09000 * 109.47521 * 329.99677 * 1 2 3 27 27 H 1.08001 * 120.97464 * 0.02562 * 3 2 1 28 28 H 1.08002 * 121.04335 * 180.02562 * 4 3 2 29 29 H 1.08993 * 109.47418 * 60.00131 * 7 6 5 30 30 H 1.09002 * 109.46995 * 299.99405 * 7 6 5 31 31 H 1.08000 * 119.87572 * 359.97438 * 9 8 7 32 32 H 1.07993 * 120.12561 * 179.72165 * 10 9 8 33 33 H 0.97005 * 119.99803 * 180.02562 * 15 14 12 34 34 H 1.08000 * 120.12510 * 179.73128 * 20 11 10 35 35 H 1.08002 * 119.87647 * 179.97438 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2009 1.2027 0.0000 4 6 3.5854 1.1557 0.0005 5 6 4.1963 -0.0989 0.0005 6 16 5.9536 -0.2279 0.0019 7 6 6.2311 -2.0206 0.0021 8 6 7.7121 -2.2996 0.0039 9 6 8.3866 -2.4270 1.2084 10 6 9.7400 -2.6762 1.2220 11 6 10.4372 -2.8116 0.0072 12 6 11.8269 -3.0725 0.0089 13 1 12.4296 -2.7938 -0.8427 14 6 12.4212 -3.6920 1.1142 15 7 11.6809 -4.3362 1.9794 16 14 14.2714 -3.5991 1.3540 17 1 14.6841 -2.1777 1.4744 18 1 14.6475 -4.3298 2.5909 19 1 14.9532 -4.2154 0.1877 20 6 9.7421 -2.6803 -1.2092 21 6 8.3897 -2.4264 -1.1989 22 7 3.4482 -1.1931 -0.0056 23 7 2.1658 -1.1415 -0.0001 24 1 -0.3634 -0.0001 -1.0277 25 1 -0.3633 -0.8901 0.5138 26 1 -0.3634 0.8899 0.5139 27 1 1.6766 2.1469 0.0004 28 1 4.1734 2.0617 0.0010 29 1 5.7796 -2.4582 -0.8881 30 1 5.7782 -2.4581 0.8919 31 1 7.8489 -2.3255 2.1395 32 1 10.2643 -2.7706 2.1614 33 1 12.0929 -4.7652 2.7457 34 1 10.2682 -2.7781 -2.1473 35 1 7.8542 -2.3249 -2.1313 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712445172.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:44 Heat of formation + Delta-G solvation = 42.323778 kcal Electronic energy + Delta-G solvation = -18227.748704 eV Core-core repulsion = 15315.689436 eV Total energy + Delta-G solvation = -2912.059268 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.083 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.88613 -39.52882 -35.89461 -34.91906 -34.09956 -33.06812 -31.24148 -29.59436 -29.02828 -25.83906 -25.71646 -24.00853 -22.94878 -21.92047 -19.26274 -19.16720 -18.45680 -17.21775 -16.73195 -16.36276 -16.08093 -15.90971 -15.69698 -15.63805 -14.61065 -14.26679 -14.11764 -14.09948 -13.86298 -13.67377 -13.47043 -13.19877 -12.92942 -12.76702 -12.60377 -12.27991 -12.05800 -11.63412 -11.54872 -11.42837 -11.31616 -11.05561 -11.00986 -10.68471 -9.42694 -9.24959 -8.73676 -8.68101 -6.37154 -0.22530 -0.17657 0.17766 0.92068 1.10892 1.32170 1.39096 1.50574 1.63842 2.19409 2.41913 2.71848 3.23584 3.54445 3.70531 3.71429 3.81896 4.05788 4.07336 4.08961 4.47699 4.54462 4.60937 4.65417 4.70413 4.78424 4.99860 5.01164 5.09596 5.11708 5.30251 5.35510 5.39255 5.65106 5.88239 6.05571 6.13718 6.31948 6.64154 6.88680 6.97178 7.61190 8.27959 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.052588 B = 0.002800 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.311706 B = 9996.713686 C =10049.992673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.048 3.952 3 C -0.087 4.087 4 C -0.105 4.105 5 C 0.034 3.966 6 S -0.064 6.064 7 C -0.010 4.010 8 C -0.209 4.209 9 C -0.082 4.082 10 C -0.190 4.190 11 C 0.087 3.913 12 C -0.492 4.492 13 H 0.080 0.920 14 C 0.035 3.965 15 N -0.819 5.819 16 Si 0.984 3.016 17 H -0.260 1.260 18 H -0.267 1.267 19 H -0.258 1.258 20 C -0.242 4.242 21 C -0.068 4.068 22 N -0.288 5.288 23 N -0.276 5.276 24 H 0.095 0.905 25 H 0.073 0.927 26 H 0.110 0.890 27 H 0.203 0.797 28 H 0.178 0.822 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.290 0.710 34 H 0.102 0.898 35 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.254 11.715 -1.601 20.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.102 4.102 3 C -0.117 4.117 4 C -0.138 4.138 5 C -0.222 4.222 6 S 0.178 5.822 7 C -0.157 4.157 8 C -0.213 4.213 9 C -0.102 4.102 10 C -0.210 4.210 11 C 0.084 3.916 12 C -0.522 4.522 13 H 0.098 0.902 14 C -0.181 4.181 15 N -0.444 5.444 16 Si 0.805 3.195 17 H -0.184 1.184 18 H -0.192 1.192 19 H -0.182 1.182 20 C -0.262 4.262 21 C -0.087 4.087 22 N -0.133 5.133 23 N -0.118 5.118 24 H 0.114 0.886 25 H 0.092 0.908 26 H 0.129 0.871 27 H 0.220 0.780 28 H 0.196 0.804 29 H 0.104 0.896 30 H 0.099 0.901 31 H 0.122 0.878 32 H 0.122 0.878 33 H 0.101 0.899 34 H 0.121 0.879 35 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -15.480 10.713 -1.390 18.877 hybrid contribution 0.181 0.027 0.225 0.290 sum -15.299 10.740 -1.165 18.729 Atomic orbital electron populations 1.20795 0.84576 1.05189 1.04682 1.23565 1.00928 0.90200 0.95476 1.22734 0.93290 1.01162 0.94491 1.22416 0.96409 0.97448 0.97552 1.25225 1.01749 0.95122 1.00099 1.85939 0.93343 1.12902 1.90046 1.21962 0.96188 0.92265 1.05284 1.18680 0.92713 1.16348 0.93549 1.20737 0.94248 0.98797 0.96458 1.21264 0.93990 1.07515 0.98209 1.18024 0.93847 0.87906 0.91835 1.19905 0.93736 1.35403 1.03117 0.90190 1.26830 1.05792 0.91592 0.93920 1.69869 1.40390 1.22929 1.11249 0.85218 0.75768 0.79708 0.78850 1.18384 1.19165 1.18215 1.21157 0.94487 1.13611 0.96906 1.20667 0.93895 0.97651 0.96532 1.73492 1.00293 1.26200 1.13313 1.72661 1.01217 1.27423 1.10454 0.88628 0.90778 0.87097 0.78029 0.80430 0.89592 0.90099 0.87761 0.87821 0.89891 0.87943 0.86590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.00 10.19 71.24 0.73 -0.27 16 2 C 0.05 0.96 6.87 42.71 0.29 1.25 16 3 C -0.09 -1.31 9.86 22.49 0.22 -1.09 16 4 C -0.10 -2.16 9.97 22.65 0.23 -1.93 16 5 C 0.03 1.01 7.08 84.90 0.60 1.61 16 6 S -0.06 -2.10 21.91 -56.49 -1.24 -3.34 16 7 C -0.01 -0.36 5.35 71.24 0.38 0.02 16 8 C -0.21 -9.10 5.16 -19.67 -0.10 -9.20 16 9 C -0.08 -3.89 9.67 22.22 0.21 -3.68 16 10 C -0.19 -10.09 8.70 22.73 0.20 -9.89 16 11 C 0.09 4.72 5.57 -21.29 -0.12 4.60 16 12 C -0.49 -26.41 9.06 23.46 0.21 -26.19 16 13 H 0.08 4.10 7.91 -2.91 -0.02 4.08 16 14 C 0.03 1.73 5.14 85.26 0.44 2.17 16 15 N -0.82 -42.70 10.95 21.83 0.24 -42.46 16 16 Si 0.98 37.70 29.59 68.60 2.03 39.73 16 17 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 18 H -0.27 -9.68 7.11 99.48 0.71 -8.98 16 19 H -0.26 -9.53 7.11 99.48 0.71 -8.83 16 20 C -0.24 -11.93 9.80 22.73 0.22 -11.70 16 21 C -0.07 -3.00 9.67 22.22 0.21 -2.78 16 22 N -0.29 -9.69 10.61 -54.28 -0.58 -10.26 16 23 N -0.28 -8.22 11.41 -47.55 -0.54 -8.77 16 24 H 0.10 0.79 8.14 -2.38 -0.02 0.77 16 25 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 26 H 0.11 0.45 8.09 -2.39 -0.02 0.43 16 27 H 0.20 0.91 8.06 -2.91 -0.02 0.89 16 28 H 0.18 2.61 8.06 -2.91 -0.02 2.59 16 29 H 0.09 3.13 8.08 -2.39 -0.02 3.11 16 30 H 0.08 3.03 8.08 -2.39 -0.02 3.02 16 31 H 0.10 4.50 8.06 -2.91 -0.02 4.48 16 32 H 0.10 5.73 6.16 -2.91 -0.02 5.71 16 33 H 0.29 13.66 8.30 -92.70 -0.77 12.90 16 34 H 0.10 4.74 8.06 -2.91 -0.02 4.72 16 35 H 0.12 4.47 8.06 -2.91 -0.02 4.45 16 Total: -1.00 -65.73 321.07 4.74 -60.99 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: 1.10 Total: 21.21 kcal Atomic # 6 Polarization: -60.83 SS G_CDS: 3.73 Total: -57.10 kcal Atomic # 7 Polarization: -60.61 SS G_CDS: -0.88 Total: -61.49 kcal Atomic # 14 Polarization: 37.70 SS G_CDS: 2.03 Total: 39.73 kcal Atomic # 16 Polarization: -2.10 SS G_CDS: -1.24 Total: -3.34 kcal Total: -65.73 4.74 -60.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712445172.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.314 kcal (2) G-P(sol) polarization free energy of solvation -65.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds