Wall clock time and date at job start Tue Mar 31 2020 06:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47466 * 2 1 4 4 C 1.38374 * 119.84584 * 269.73013 * 3 2 1 5 5 C 1.37934 * 120.15368 * 179.72101 * 4 3 2 6 6 C 1.39671 * 119.84258 * 0.57054 * 5 4 3 7 7 C 1.47666 * 120.15223 * 179.72744 * 6 5 4 8 8 C 1.36607 * 125.64656 * 359.68877 * 7 6 5 9 9 C 1.39766 * 107.11507 * 179.87942 * 8 7 6 10 10 C 1.37965 * 106.76362 * 0.38412 * 9 8 7 11 11 C 1.46244 * 125.97115 * 179.76365 * 10 9 8 12 12 O 1.21691 * 119.99948 * 0.02562 * 11 10 9 13 13 O 1.34911 * 120.00151 * 180.02562 * 11 10 9 14 14 C 1.34819 * 117.00075 * 179.97438 * 13 11 10 15 15 H 1.07996 * 120.00412 * 359.97438 * 14 13 11 16 16 C 1.38811 * 120.00163 * 180.02562 * 14 13 11 17 17 N 1.31420 * 119.99751 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 120.00258 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47280 * 59.99291 * 18 16 14 20 20 H 1.48497 * 109.47174 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.46807 * 299.99447 * 18 16 14 22 22 O 1.34361 * 125.64629 * 180.02562 * 7 6 5 23 23 C 1.39664 * 119.69290 * 359.69923 * 6 5 4 24 24 C 1.37932 * 119.84613 * 0.02562 * 23 6 5 25 25 H 1.09002 * 109.47153 * 59.99773 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99964 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 120.00227 * 2 1 3 29 29 H 1.08998 * 109.47533 * 239.99856 * 2 1 3 30 30 H 1.07998 * 119.92450 * 359.97438 * 4 3 2 31 31 H 1.07995 * 120.08346 * 180.27100 * 5 4 3 32 32 H 1.07999 * 126.44566 * 0.03120 * 8 7 6 33 33 H 1.08003 * 126.61577 * 180.14483 * 9 8 7 34 34 H 0.96999 * 120.00443 * 180.02562 * 17 16 14 35 35 H 1.08001 * 120.07384 * 180.02562 * 23 6 5 36 36 H 1.08000 * 119.92274 * 179.97438 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2673 2.0681 -1.2002 5 6 2.7217 3.3704 -1.2076 6 6 2.9561 4.0317 0.0001 7 6 3.4483 5.4239 0.0001 8 6 3.7189 6.1727 -1.1100 9 6 4.1559 7.4237 -0.6658 10 6 4.1420 7.3835 0.7132 11 6 4.5281 8.4737 1.6083 12 8 4.9032 9.5356 1.1472 13 8 4.4683 8.3022 2.9451 14 6 4.8386 9.3464 3.7133 15 1 5.1647 10.2671 3.2525 16 6 4.8017 9.2379 5.0967 17 7 4.4054 8.1174 5.6575 18 14 5.3140 10.6849 6.1611 19 1 4.4390 11.8486 5.8690 20 1 5.1845 10.3159 7.5937 21 1 6.7255 11.0406 5.8667 22 8 3.7102 6.1618 1.0919 23 6 2.7221 3.3703 1.2077 24 6 2.2623 2.0699 1.2003 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 2.0906 1.5539 -2.1333 31 1 2.9005 3.8760 -2.1450 32 1 3.6126 5.8580 -2.1377 33 1 4.4514 8.2593 -1.2830 34 1 4.3792 8.0416 6.6242 35 1 2.9009 3.8759 2.1452 36 1 2.0814 1.5571 2.1334 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000745595359.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:54 Heat of formation + Delta-G solvation = -51.363787 kcal Electronic energy + Delta-G solvation = -20869.779911 eV Core-core repulsion = 17478.612423 eV Total energy + Delta-G solvation = -3391.167488 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.104 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.19388 -39.38175 -38.81197 -35.34267 -34.62951 -32.78583 -32.28184 -31.00579 -30.85970 -28.22600 -25.71367 -24.35957 -23.09539 -22.41208 -21.29538 -20.56177 -19.85337 -17.98459 -17.78118 -16.77250 -15.96584 -15.65720 -15.49248 -15.05673 -14.43782 -14.29474 -14.17733 -13.92639 -13.63394 -13.46318 -13.04835 -12.90308 -12.62188 -12.51731 -12.24506 -12.02995 -11.69794 -11.42834 -11.31193 -11.08775 -10.93857 -10.57114 -10.52515 -10.01349 -9.83097 -9.39683 -9.27983 -9.04306 -8.70269 -7.67583 -6.55305 -4.17805 0.66412 1.33025 1.78509 2.71007 2.95685 3.13652 3.14005 3.18360 3.77668 3.85321 3.87916 4.39294 4.54144 4.64788 4.78578 4.90982 5.00137 5.04458 5.11417 5.14810 5.30878 5.31237 5.41801 5.63376 5.72768 5.75850 5.85203 5.91718 5.95233 6.00366 6.03879 6.30239 6.38572 6.49153 6.65368 6.70028 6.85677 7.24426 7.35682 7.78443 8.51525 8.91009 9.67253 10.61145 Molecular weight = 286.10amu Principal moments of inertia in cm(-1) A = 0.022429 B = 0.003398 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.077017 B = 8237.070885 C = 9386.174462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 C -0.082 4.082 4 C -0.117 4.117 5 C -0.095 4.095 6 C -0.016 4.016 7 C 0.029 3.971 8 C -0.195 4.195 9 C -0.149 4.149 10 C -0.001 4.001 11 C 0.462 3.538 12 O -0.535 6.535 13 O -0.192 6.192 14 C -0.376 4.376 15 H 0.102 0.898 16 C 0.042 3.958 17 N -0.849 5.849 18 Si 0.950 3.050 19 H -0.267 1.267 20 H -0.277 1.277 21 H -0.267 1.267 22 O -0.140 6.140 23 C -0.095 4.095 24 C -0.114 4.114 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.125 0.875 31 H 0.128 0.872 32 H 0.154 0.846 33 H 0.160 0.840 34 H 0.274 0.726 35 H 0.134 0.866 36 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.802 -15.099 -11.317 19.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.122 4.122 3 C -0.082 4.082 4 C -0.135 4.135 5 C -0.114 4.114 6 C -0.016 4.016 7 C -0.023 4.023 8 C -0.214 4.214 9 C -0.169 4.169 10 C -0.052 4.052 11 C 0.310 3.690 12 O -0.435 6.435 13 O -0.098 6.098 14 C -0.452 4.452 15 H 0.119 0.881 16 C -0.164 4.164 17 N -0.485 5.485 18 Si 0.774 3.226 19 H -0.192 1.192 20 H -0.202 1.202 21 H -0.192 1.192 22 O -0.034 6.034 23 C -0.113 4.113 24 C -0.132 4.132 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.143 0.857 31 H 0.146 0.854 32 H 0.172 0.828 33 H 0.178 0.822 34 H 0.084 0.916 35 H 0.152 0.848 36 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -5.779 -15.029 -10.854 19.418 hybrid contribution 0.276 0.768 0.391 0.905 sum -5.503 -14.262 -10.463 18.524 Atomic orbital electron populations 1.21757 0.94669 1.01642 1.02412 1.20555 0.96221 0.92580 1.02884 1.20017 0.98681 0.96311 0.93178 1.20852 1.00666 0.94391 0.97626 1.21025 0.99105 0.94591 0.96632 1.17793 1.00960 0.88558 0.94299 1.20636 1.04689 0.92340 0.84632 1.21570 1.06905 0.94008 0.98908 1.21910 1.03814 0.98858 0.92288 1.21816 1.06293 0.83831 0.93295 1.18861 0.82209 0.84959 0.82976 1.90746 1.49545 1.25961 1.77209 1.83998 1.69563 1.41757 1.14499 1.21371 1.44159 0.92607 0.87014 0.88078 1.25482 0.96173 0.98682 0.96043 1.69995 1.41552 1.25135 1.11774 0.85640 0.79587 0.79475 0.77918 1.19188 1.20169 1.19183 1.84230 1.63553 1.22099 1.33533 1.21437 0.97238 0.94661 0.97938 1.20974 0.99930 0.94557 0.97759 0.92522 0.92393 0.92450 0.90941 0.91035 0.85676 0.85370 0.82826 0.82188 0.91584 0.84785 0.85616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.89 37.16 0.37 -0.66 16 2 C -0.09 -0.64 6.06 -27.89 -0.17 -0.81 16 3 C -0.08 -0.83 5.14 -104.52 -0.54 -1.37 16 4 C -0.12 -1.17 9.68 -39.64 -0.38 -1.55 16 5 C -0.10 -1.10 9.56 -39.16 -0.37 -1.47 16 6 C -0.02 -0.23 5.87 -104.98 -0.62 -0.85 16 7 C 0.03 0.50 7.02 -36.32 -0.25 0.25 16 8 C -0.19 -3.02 10.21 -39.60 -0.40 -3.42 16 9 C -0.15 -2.72 10.65 -39.11 -0.42 -3.14 16 10 C 0.00 -0.01 7.21 -36.47 -0.26 -0.28 16 11 C 0.46 12.36 7.86 33.95 0.27 12.63 16 12 O -0.53 -14.88 16.12 -19.42 -0.31 -15.19 16 13 O -0.19 -5.76 9.75 -23.54 -0.23 -5.99 16 14 C -0.38 -11.19 9.65 30.94 0.30 -10.89 16 15 H 0.10 2.96 6.86 -52.49 -0.36 2.60 16 16 C 0.04 1.19 5.50 -17.52 -0.10 1.09 16 17 N -0.85 -24.78 13.67 55.49 0.76 -24.02 16 18 Si 0.95 20.95 29.55 -169.99 -5.02 15.93 16 19 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 20 H -0.28 -5.83 7.11 56.52 0.40 -5.42 16 21 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 22 O -0.14 -3.00 10.40 3.31 0.03 -2.97 16 23 C -0.09 -1.35 9.72 -39.16 -0.38 -1.73 16 24 C -0.11 -1.33 9.68 -39.64 -0.38 -1.71 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 29 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 30 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 31 H 0.13 1.19 6.96 -52.49 -0.37 0.83 16 32 H 0.15 1.75 7.23 -52.49 -0.38 1.37 16 33 H 0.16 2.63 8.06 -52.48 -0.42 2.21 16 34 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 35 H 0.13 2.06 7.90 -52.49 -0.41 1.64 16 36 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 LS Contribution 326.53 15.07 4.92 4.92 Total: -1.00 -33.20 326.53 -7.23 -40.43 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -4.03 Total: 0.81 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: -3.35 Total: -13.91 kcal Atomic # 7 Polarization: -24.78 SS G_CDS: 0.76 Total: -24.02 kcal Atomic # 8 Polarization: -23.65 SS G_CDS: -0.51 Total: -24.15 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.20 -7.23 -40.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745595359.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.938 kcal (2) G-P(sol) polarization free energy of solvation -33.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds