Wall clock time and date at job start Tue Mar 31 2020 06:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47466 * 2 1 4 4 C 1.38374 * 119.84584 * 269.73013 * 3 2 1 5 5 C 1.37934 * 120.15368 * 179.72101 * 4 3 2 6 6 C 1.39671 * 119.84258 * 0.57054 * 5 4 3 7 7 C 1.47666 * 120.15223 * 179.72744 * 6 5 4 8 8 C 1.36607 * 125.64656 * 359.68877 * 7 6 5 9 9 C 1.39766 * 107.11507 * 179.87942 * 8 7 6 10 10 C 1.37965 * 106.76362 * 0.38412 * 9 8 7 11 11 C 1.46244 * 125.97115 * 179.76365 * 10 9 8 12 12 O 1.21691 * 119.99948 * 0.02562 * 11 10 9 13 13 O 1.34911 * 120.00151 * 180.02562 * 11 10 9 14 14 C 1.34819 * 117.00075 * 179.97438 * 13 11 10 15 15 H 1.07996 * 120.00412 * 359.97438 * 14 13 11 16 16 C 1.38811 * 120.00163 * 180.02562 * 14 13 11 17 17 N 1.31420 * 119.99751 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 120.00258 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47280 * 59.99291 * 18 16 14 20 20 H 1.48497 * 109.47174 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.46807 * 299.99447 * 18 16 14 22 22 O 1.34361 * 125.64629 * 180.02562 * 7 6 5 23 23 C 1.39664 * 119.69290 * 359.69923 * 6 5 4 24 24 C 1.37932 * 119.84613 * 0.02562 * 23 6 5 25 25 H 1.09002 * 109.47153 * 59.99773 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99964 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 120.00227 * 2 1 3 29 29 H 1.08998 * 109.47533 * 239.99856 * 2 1 3 30 30 H 1.07998 * 119.92450 * 359.97438 * 4 3 2 31 31 H 1.07995 * 120.08346 * 180.27100 * 5 4 3 32 32 H 1.07999 * 126.44566 * 0.03120 * 8 7 6 33 33 H 1.08003 * 126.61577 * 180.14483 * 9 8 7 34 34 H 0.96999 * 120.00443 * 180.02562 * 17 16 14 35 35 H 1.08001 * 120.07384 * 180.02562 * 23 6 5 36 36 H 1.08000 * 119.92274 * 179.97438 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2673 2.0681 -1.2002 5 6 2.7217 3.3704 -1.2076 6 6 2.9561 4.0317 0.0001 7 6 3.4483 5.4239 0.0001 8 6 3.7189 6.1727 -1.1100 9 6 4.1559 7.4237 -0.6658 10 6 4.1420 7.3835 0.7132 11 6 4.5281 8.4737 1.6083 12 8 4.9032 9.5356 1.1472 13 8 4.4683 8.3022 2.9451 14 6 4.8386 9.3464 3.7133 15 1 5.1647 10.2671 3.2525 16 6 4.8017 9.2379 5.0967 17 7 4.4054 8.1174 5.6575 18 14 5.3140 10.6849 6.1611 19 1 4.4390 11.8486 5.8690 20 1 5.1845 10.3159 7.5937 21 1 6.7255 11.0406 5.8667 22 8 3.7102 6.1618 1.0919 23 6 2.7221 3.3703 1.2077 24 6 2.2623 2.0699 1.2003 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 2.0906 1.5539 -2.1333 31 1 2.9005 3.8760 -2.1450 32 1 3.6126 5.8580 -2.1377 33 1 4.4514 8.2593 -1.2830 34 1 4.3792 8.0416 6.6242 35 1 2.9009 3.8759 2.1452 36 1 2.0814 1.5571 2.1334 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000745595359.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:53 Heat of formation + Delta-G solvation = -70.276940 kcal Electronic energy + Delta-G solvation = -20870.600047 eV Core-core repulsion = 17478.612423 eV Total energy + Delta-G solvation = -3391.987624 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.104 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.70600 -40.97876 -40.25636 -37.48206 -35.48290 -34.46429 -34.17048 -32.02882 -31.91018 -29.53409 -27.64099 -25.56778 -24.23596 -23.63099 -22.48532 -21.86508 -21.30777 -20.04144 -19.57845 -18.21964 -17.63039 -17.09954 -16.51588 -16.36461 -16.32759 -16.23759 -15.25757 -14.83535 -14.65775 -14.50028 -14.33326 -14.20316 -13.97855 -13.86625 -13.63118 -13.33231 -13.18503 -12.78430 -12.49176 -12.24715 -12.17555 -12.15650 -11.83959 -11.66324 -11.52752 -11.18277 -10.81365 -10.50376 -9.96535 -8.95745 -8.65553 -6.44445 -0.60278 0.36300 0.41106 1.28934 1.36792 1.44977 1.47735 1.53197 1.95398 2.07852 2.64063 2.80126 2.89921 3.42836 3.78994 3.83383 3.90258 4.00421 4.25637 4.34596 4.43670 4.47200 4.55549 4.55828 4.60859 4.67608 4.85610 4.99958 5.02656 5.04392 5.13029 5.15424 5.26778 5.38019 5.43288 5.48399 5.64904 5.66135 5.88449 5.95966 6.38120 6.76320 7.54289 8.54842 Molecular weight = 286.10amu Principal moments of inertia in cm(-1) A = 0.022429 B = 0.003398 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.077017 B = 8237.070885 C = 9386.174462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 C -0.070 4.070 4 C -0.113 4.113 5 C -0.082 4.082 6 C -0.053 4.053 7 C 0.044 3.956 8 C -0.187 4.187 9 C -0.108 4.108 10 C -0.074 4.074 11 C 0.468 3.532 12 O -0.556 6.556 13 O -0.231 6.231 14 C -0.425 4.425 15 H 0.093 0.907 16 C -0.005 4.005 17 N -0.897 5.897 18 Si 1.028 2.972 19 H -0.257 1.257 20 H -0.257 1.257 21 H -0.257 1.257 22 O -0.173 6.173 23 C -0.117 4.117 24 C -0.123 4.123 25 H 0.058 0.942 26 H 0.045 0.955 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.093 0.907 30 H 0.164 0.836 31 H 0.159 0.841 32 H 0.209 0.791 33 H 0.181 0.819 34 H 0.283 0.717 35 H 0.104 0.896 36 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.504 -17.235 -14.126 23.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 C -0.070 4.070 4 C -0.131 4.131 5 C -0.099 4.099 6 C -0.054 4.054 7 C -0.008 4.008 8 C -0.205 4.205 9 C -0.127 4.127 10 C -0.124 4.124 11 C 0.318 3.682 12 O -0.456 6.456 13 O -0.139 6.139 14 C -0.499 4.499 15 H 0.111 0.889 16 C -0.206 4.206 17 N -0.533 5.533 18 Si 0.845 3.155 19 H -0.181 1.181 20 H -0.181 1.181 21 H -0.181 1.181 22 O -0.069 6.069 23 C -0.135 4.135 24 C -0.141 4.141 25 H 0.077 0.923 26 H 0.064 0.936 27 H 0.091 0.909 28 H 0.096 0.904 29 H 0.111 0.889 30 H 0.182 0.818 31 H 0.177 0.823 32 H 0.225 0.775 33 H 0.198 0.802 34 H 0.093 0.907 35 H 0.122 0.878 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -6.486 -17.176 -13.687 22.900 hybrid contribution 0.361 1.068 0.988 1.499 sum -6.124 -16.108 -12.699 21.406 Atomic orbital electron populations 1.21756 0.94141 1.02591 1.01956 1.20648 0.96500 0.90730 1.04286 1.20445 0.96408 0.97513 0.92613 1.21328 0.98994 0.93767 0.98977 1.21390 0.97265 0.95053 0.96220 1.17991 1.03910 0.87642 0.95812 1.21565 1.01817 0.93161 0.84245 1.22069 1.05787 0.91945 1.00660 1.22361 0.99754 1.00304 0.90328 1.21353 1.12829 0.84334 0.93917 1.19596 0.80097 0.86002 0.82538 1.90678 1.50206 1.27289 1.77459 1.84028 1.71292 1.42428 1.16102 1.21664 1.47211 0.92867 0.88203 0.88950 1.26824 0.95053 1.02137 0.96605 1.70095 1.42888 1.27606 1.12674 0.84556 0.79566 0.75204 0.76174 1.18105 1.18084 1.18092 1.84178 1.64523 1.22300 1.35890 1.21388 0.98927 0.96066 0.97146 1.21151 0.99935 0.93582 0.99448 0.92293 0.93580 0.90880 0.90416 0.88880 0.81821 0.82299 0.77455 0.80157 0.90729 0.87822 0.84499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.89 71.98 0.71 -0.85 16 2 C -0.08 -0.94 6.06 29.85 0.18 -0.76 16 3 C -0.07 -1.19 5.14 -19.80 -0.10 -1.29 16 4 C -0.11 -1.72 9.68 22.23 0.22 -1.50 16 5 C -0.08 -1.55 9.56 22.54 0.22 -1.33 16 6 C -0.05 -1.50 5.87 -20.10 -0.12 -1.62 16 7 C 0.04 1.51 7.02 24.38 0.17 1.68 16 8 C -0.19 -5.26 10.21 22.26 0.23 -5.03 16 9 C -0.11 -3.85 10.65 22.57 0.24 -3.61 16 10 C -0.07 -3.51 7.21 24.29 0.18 -3.33 16 11 C 0.47 26.87 7.86 69.90 0.55 27.42 16 12 O -0.56 -32.71 16.12 19.21 0.31 -32.40 16 13 O -0.23 -15.02 9.75 11.30 0.11 -14.91 16 14 C -0.42 -27.03 9.65 67.96 0.66 -26.37 16 15 H 0.09 5.81 6.86 -2.91 -0.02 5.79 16 16 C 0.00 -0.29 5.50 84.89 0.47 0.18 16 17 N -0.90 -55.08 13.67 21.63 0.30 -54.78 16 18 Si 1.03 44.08 29.55 68.60 2.03 46.10 16 19 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 20 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 21 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 22 O -0.17 -7.89 10.40 -9.70 -0.10 -7.99 16 23 C -0.12 -3.45 9.72 22.54 0.22 -3.23 16 24 C -0.12 -2.77 9.68 22.23 0.22 -2.55 16 25 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 28 H 0.08 0.83 8.08 -2.39 -0.02 0.81 16 29 H 0.09 0.71 8.08 -2.39 -0.02 0.69 16 30 H 0.16 1.31 8.06 -2.91 -0.02 1.29 16 31 H 0.16 2.00 6.96 -2.91 -0.02 1.98 16 32 H 0.21 3.49 7.23 -2.91 -0.02 3.47 16 33 H 0.18 5.59 8.06 -2.91 -0.02 5.57 16 34 H 0.28 15.61 8.31 -92.71 -0.77 14.84 16 35 H 0.10 3.58 7.90 -2.91 -0.02 3.55 16 36 H 0.14 2.63 8.06 -2.91 -0.02 2.61 16 Total: -1.00 -80.59 326.53 7.76 -72.82 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: 1.10 Total: 13.37 kcal Atomic # 6 Polarization: -26.24 SS G_CDS: 4.02 Total: -22.21 kcal Atomic # 7 Polarization: -55.08 SS G_CDS: 0.30 Total: -54.78 kcal Atomic # 8 Polarization: -55.62 SS G_CDS: 0.32 Total: -55.30 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.10 kcal Total: -80.59 7.76 -72.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745595359.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.545 kcal (2) G-P(sol) polarization free energy of solvation -80.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds