Wall clock time and date at job start Tue Mar 31 2020 05:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31293 * 1 3 3 Si 1.86804 * 120.00473 * 2 1 4 4 H 1.48495 * 109.47185 * 239.99938 * 3 2 1 5 5 H 1.48500 * 109.46689 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47232 * 119.99849 * 3 2 1 7 7 C 1.38987 * 119.99814 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00126 * 179.97438 * 7 2 1 9 9 N 1.37318 * 120.00084 * 0.02562 * 7 2 1 10 10 C 1.36506 * 126.06826 * 180.28178 * 9 7 2 11 11 C 1.35699 * 107.50235 * 180.15964 * 10 9 7 12 12 N 1.40515 * 126.08654 * 179.84622 * 11 10 9 13 13 C 1.34776 * 120.00243 * 179.71580 * 12 11 10 14 14 O 1.21748 * 120.00119 * 359.97438 * 13 12 11 15 15 C 1.46486 * 119.99882 * 179.97438 * 13 12 11 16 16 C 1.37791 * 125.85333 * 180.02562 * 15 13 12 17 17 C 1.39937 * 107.68279 * 179.97438 * 16 15 13 18 18 O 1.35119 * 145.13556 * 179.97438 * 17 16 15 19 19 C 1.34384 * 109.62088 * 180.02562 * 18 17 16 20 20 C 1.34464 * 109.44789 * 359.97438 * 19 18 17 21 21 C 1.39136 * 107.40737 * 359.97438 * 17 16 15 22 22 N 1.37135 * 108.10659 * 359.77083 * 21 17 16 23 23 H 0.96992 * 125.74132 * 180.26910 * 22 21 17 24 24 C 1.40671 * 107.82885 * 359.57656 * 11 10 9 25 25 N 1.30905 * 108.39221 * 0.26835 * 24 11 10 26 26 H 0.96997 * 119.99627 * 0.02562 * 1 2 3 27 27 H 1.07999 * 126.24921 * 359.97438 * 10 9 7 28 28 H 0.97003 * 120.00244 * 359.70549 * 12 11 10 29 29 H 1.08000 * 126.15765 * 359.97438 * 16 15 13 30 30 H 1.08003 * 125.27644 * 179.97438 * 19 18 17 31 31 H 1.08004 * 126.41970 * 179.97438 * 20 19 18 32 32 H 1.07997 * 125.80569 * 180.26282 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2471 1.6177 0.0000 4 1 3.1008 1.6963 -1.2124 5 1 1.2821 2.7464 -0.0006 6 1 3.1008 1.6963 1.2125 7 6 2.0078 -1.2037 0.0005 8 1 3.0878 -1.2037 0.0001 9 7 1.3212 -2.3929 0.0005 10 6 1.8749 -3.6406 0.0065 11 6 0.8576 -4.5386 0.0005 12 7 0.9885 -5.9376 0.0006 13 6 -0.1108 -6.7174 0.0001 14 8 -1.2173 -6.2096 0.0000 15 6 0.0258 -8.1759 -0.0004 16 6 -1.0109 -9.0835 -0.0015 17 6 -0.4524 -10.3666 -0.0022 18 8 -0.7181 -11.6914 -0.0030 19 6 0.4342 -12.3828 -0.0028 20 6 1.4704 -11.5260 -0.0026 21 6 0.9311 -10.2185 -0.0022 22 7 1.2160 -8.8770 -0.0067 23 1 2.1038 -8.4864 -0.0114 24 6 -0.3515 -3.8196 0.0006 25 7 -0.0717 -2.5408 0.0005 26 1 -0.4849 0.8400 -0.0004 27 1 2.9300 -3.8710 0.0116 28 1 1.8701 -6.3423 0.0009 29 1 -2.0647 -8.8472 -0.0017 30 1 0.5154 -13.4598 -0.0029 31 1 2.5184 -11.7871 -0.0020 32 1 -1.3423 -4.2495 0.0006 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000750854888.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:33 Heat of formation + Delta-G solvation = 118.839223 kcal Electronic energy + Delta-G solvation = -20770.661258 eV Core-core repulsion = 17315.626733 eV Total energy + Delta-G solvation = -3455.034524 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.085 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.00483 -40.24310 -39.42204 -38.04437 -34.39559 -33.24831 -32.47130 -30.69665 -30.32124 -28.81244 -27.48815 -25.07965 -23.46494 -21.77524 -21.04591 -20.79509 -20.05466 -19.46432 -18.38517 -17.58338 -16.81938 -16.34524 -15.85961 -15.49124 -15.08315 -14.80210 -14.54459 -14.01952 -13.61416 -13.51393 -13.44719 -12.99104 -12.96351 -12.87011 -11.83826 -11.71963 -11.51199 -11.28122 -11.02809 -10.59056 -10.32042 -10.16236 -9.52793 -9.22972 -8.87367 -8.69930 -8.12921 -7.96538 -6.78063 -6.60074 -4.27838 0.96532 2.17625 2.40118 2.57134 2.83269 2.93280 3.02216 3.06633 3.31744 3.49120 3.72168 3.83843 4.38211 4.44367 4.61958 4.78620 4.97825 5.04817 5.16066 5.35770 5.44172 5.71906 6.02303 6.16497 6.21405 6.32304 6.52159 6.81018 6.88248 7.01602 7.04509 7.16799 7.21502 7.79957 8.03471 8.19120 8.51989 8.70951 9.31494 9.60607 10.35705 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.061402 B = 0.002901 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.905003 B = 9648.192971 C =10094.252789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.046 3.954 3 Si 0.936 3.064 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.267 1.267 7 C -0.323 4.323 8 H 0.116 0.884 9 N -0.140 5.140 10 C -0.083 4.083 11 C -0.064 4.064 12 N -0.617 5.617 13 C 0.569 3.431 14 O -0.515 6.515 15 C 0.027 3.973 16 C -0.088 4.088 17 C -0.037 4.037 18 O -0.169 6.169 19 C 0.004 3.996 20 C -0.201 4.201 21 C 0.002 3.998 22 N -0.534 5.534 23 H 0.419 0.581 24 C -0.028 4.028 25 N -0.259 5.259 26 H 0.276 0.724 27 H 0.146 0.854 28 H 0.391 0.609 29 H 0.161 0.839 30 H 0.210 0.790 31 H 0.152 0.848 32 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.765 -18.432 -0.004 19.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.171 4.171 3 Si 0.759 3.241 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.191 1.191 7 C -0.455 4.455 8 H 0.134 0.866 9 N 0.093 4.907 10 C -0.235 4.235 11 C -0.169 4.169 12 N -0.258 5.258 13 C 0.355 3.645 14 O -0.391 6.391 15 C -0.086 4.086 16 C -0.116 4.116 17 C -0.089 4.089 18 O -0.067 6.067 19 C -0.064 4.064 20 C -0.222 4.222 21 C -0.111 4.111 22 N -0.138 5.138 23 H 0.257 0.743 24 C -0.204 4.204 25 N -0.090 5.090 26 H 0.087 0.913 27 H 0.163 0.837 28 H 0.224 0.776 29 H 0.179 0.821 30 H 0.227 0.773 31 H 0.169 0.831 32 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 4.098 -16.708 -0.010 17.203 hybrid contribution 2.098 -0.351 0.001 2.127 sum 6.196 -17.059 -0.008 18.149 Atomic orbital electron populations 1.70201 1.06146 1.28243 1.34791 1.25655 0.95727 1.00321 0.95435 0.85880 0.79153 0.79554 0.79486 1.19138 1.20074 1.19131 1.19845 0.91669 0.80531 1.53501 0.86599 1.44568 1.04100 1.03295 1.38712 1.21230 0.96762 0.85372 1.20096 1.17200 0.94542 0.80605 1.24571 1.42306 1.07496 1.05001 1.70986 1.16644 0.85026 0.83147 0.79653 1.90782 1.25241 1.72677 1.50398 1.20493 0.83698 0.91904 1.12459 1.19888 0.99316 0.84587 1.07786 1.19307 0.92968 0.83796 1.12843 1.84016 1.32256 1.14890 1.75503 1.23996 0.81482 0.97776 1.03099 1.20531 1.00474 0.88114 1.13098 1.19004 0.94994 0.85746 1.11340 1.41198 1.08047 1.03296 1.61302 0.74258 1.24150 0.98017 0.90706 1.07507 1.78284 0.90020 1.14995 1.25744 0.91288 0.83682 0.77607 0.82119 0.77342 0.83054 0.80529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.24 11.81 55.49 0.66 -20.58 16 2 C 0.05 1.18 5.50 -17.50 -0.10 1.08 16 3 Si 0.94 18.64 29.55 -169.99 -5.02 13.62 16 4 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 5 H -0.28 -5.46 7.11 56.52 0.40 -5.05 16 6 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 7 C -0.32 -8.42 10.25 -14.82 -0.15 -8.57 16 8 H 0.12 2.67 7.83 -52.49 -0.41 2.26 16 9 N -0.14 -3.78 3.74 -11.40 -0.04 -3.82 16 10 C -0.08 -1.92 11.50 -16.38 -0.19 -2.11 16 11 C -0.06 -1.44 6.90 -83.86 -0.58 -2.02 16 12 N -0.62 -10.71 5.46 -11.23 -0.06 -10.77 16 13 C 0.57 10.16 7.75 -12.94 -0.10 10.06 16 14 O -0.52 -11.07 14.01 5.15 0.07 -11.00 16 15 C 0.03 0.40 7.03 -81.86 -0.58 -0.18 16 16 C -0.09 -1.28 10.58 -39.11 -0.41 -1.69 16 17 C -0.04 -0.51 8.20 -38.61 -0.32 -0.82 16 18 O -0.17 -2.03 10.68 3.19 0.03 -1.99 16 19 C 0.00 0.04 12.02 29.40 0.35 0.39 16 20 C -0.20 -1.81 10.89 -39.70 -0.43 -2.24 16 21 C 0.00 0.02 8.11 -83.94 -0.68 -0.66 16 22 N -0.53 -6.13 6.08 -7.04 -0.04 -6.17 16 23 H 0.42 3.48 8.16 -40.82 -0.33 3.14 16 24 C -0.03 -0.74 10.85 -17.03 -0.18 -0.92 16 25 N -0.26 -7.47 10.39 30.80 0.32 -7.15 16 26 H 0.28 7.01 8.31 -40.82 -0.34 6.67 16 27 H 0.15 2.74 8.06 -52.49 -0.42 2.31 16 28 H 0.39 5.06 7.91 -40.82 -0.32 4.74 16 29 H 0.16 2.19 8.06 -52.49 -0.42 1.77 16 30 H 0.21 0.70 8.06 -52.48 -0.42 0.28 16 31 H 0.15 0.93 8.06 -52.48 -0.42 0.51 16 32 H 0.18 4.55 5.91 -52.49 -0.31 4.24 16 LS Contribution 292.95 15.07 4.41 4.41 Total: -1.00 -34.52 292.95 -5.24 -39.77 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -2.20 Total: 11.36 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: -3.37 Total: -7.67 kcal Atomic # 7 Polarization: -49.32 SS G_CDS: 0.83 Total: -48.49 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: 0.11 Total: -13.00 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.02 Total: 13.62 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -34.52 -5.24 -39.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750854888.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.605 kcal (2) G-P(sol) polarization free energy of solvation -34.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds