Wall clock time and date at job start Tue Mar 31 2020 05:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42911 * 1 3 3 C 1.35689 * 116.99525 * 2 1 4 4 C 1.38821 * 120.14913 * 270.01422 * 3 2 1 5 5 F 1.35094 * 119.93907 * 0.02562 * 4 3 2 6 6 C 1.38269 * 120.11914 * 179.97438 * 4 3 2 7 7 C 1.38461 * 120.42928 * 0.02562 * 6 4 3 8 8 C 1.38077 * 120.28947 * 359.71892 * 7 6 4 9 9 F 1.35102 * 120.06255 * 180.28078 * 8 7 6 10 10 C 1.40053 * 119.87296 * 0.55223 * 8 7 6 11 11 C 1.47250 * 120.20791 * 179.72447 * 10 8 7 12 12 O 1.21533 * 119.99889 * 269.72745 * 11 10 8 13 13 O 1.34763 * 120.00289 * 89.44873 * 11 10 8 14 14 C 1.45196 * 117.00315 * 180.27180 * 13 11 10 15 15 C 1.53001 * 109.47485 * 180.02562 * 14 13 11 16 16 C 1.50698 * 109.47181 * 180.02562 * 15 14 13 17 17 H 1.08003 * 120.00085 * 0.02562 * 16 15 14 18 18 C 1.37874 * 119.99811 * 180.02562 * 16 15 14 19 19 N 1.31521 * 120.00434 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00213 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.46899 * 59.99886 * 20 18 16 22 22 H 1.48494 * 109.47389 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.46923 * 300.00433 * 20 18 16 24 24 H 1.09001 * 109.46787 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47065 * 299.99598 * 1 2 3 26 26 H 1.08995 * 109.46819 * 60.00070 * 1 2 3 27 27 H 1.08000 * 119.78611 * 180.02562 * 6 4 3 28 28 H 1.07996 * 119.85728 * 180.02562 * 7 6 4 29 29 H 1.08998 * 109.47461 * 300.00597 * 14 13 11 30 30 H 1.09010 * 109.46796 * 60.00387 * 14 13 11 31 31 H 1.08998 * 109.47123 * 300.00638 * 15 14 13 32 32 H 1.08996 * 109.46839 * 60.00406 * 15 14 13 33 33 H 0.96988 * 120.00151 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 2.3612 1.8304 -1.2004 5 9 2.0547 1.2305 -2.3714 6 6 2.9884 3.0627 -1.1997 7 6 3.3067 3.6869 -0.0054 8 6 2.9954 3.0869 1.1985 9 9 3.3030 3.7026 2.3611 10 6 2.3653 1.8362 1.2123 11 6 2.0355 1.1868 2.4921 12 8 2.8374 0.4415 3.0197 13 8 0.8467 1.4234 3.0811 14 6 0.5919 0.7540 4.3441 15 6 -0.7971 1.1414 4.8556 16 6 -1.0612 0.4471 6.1668 17 1 -0.3131 -0.2050 6.5929 18 6 -2.2579 0.6443 6.8224 19 7 -3.1693 1.4379 6.3033 20 14 -2.5858 -0.2169 8.4474 21 1 -1.5607 0.1933 9.4406 22 1 -3.9337 0.1593 8.9439 23 1 -2.5229 -1.6874 8.2497 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 3.2316 3.5415 -2.1367 28 1 3.7961 4.6495 -0.0157 29 1 0.6372 -0.3253 4.1989 30 1 1.3447 1.0545 5.0729 31 1 -0.8428 2.2207 5.0007 32 1 -1.5496 0.8406 4.1268 33 1 -4.0109 1.5769 6.7648 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756679529.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:32 Heat of formation + Delta-G solvation = -188.685718 kcal Electronic energy + Delta-G solvation = -22270.187701 eV Core-core repulsion = 18318.835957 eV Total energy + Delta-G solvation = -3951.351744 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.085 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.29150 -49.26517 -40.62012 -39.27918 -37.59678 -36.18061 -33.40415 -31.75136 -30.33354 -30.16093 -27.27549 -25.61571 -24.35149 -22.97451 -21.52778 -20.78298 -18.77534 -18.21176 -18.11924 -17.19444 -16.68046 -16.42083 -16.08946 -15.92252 -15.70894 -15.64638 -15.23132 -14.88517 -14.70092 -14.54348 -13.64809 -13.26954 -13.11014 -12.84476 -12.49278 -12.40499 -12.16647 -11.70109 -11.30346 -11.12702 -10.84614 -10.79544 -10.58840 -10.33009 -9.73672 -9.72883 -9.50982 -9.36601 -8.95815 -8.47657 -6.13860 -4.18641 0.26483 0.41000 2.17032 2.58106 2.85876 3.14767 3.28436 3.32492 3.35763 3.72414 3.84837 4.19838 4.35339 4.46114 4.60928 4.92110 5.11007 5.22711 5.23468 5.33520 5.38073 5.41924 5.51576 5.60877 5.97512 6.01235 6.07064 6.54862 6.74405 6.96196 7.47830 7.55610 7.79246 7.97486 8.18678 8.86358 9.46050 10.97540 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.024904 B = 0.003889 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.040879 B = 7198.029531 C = 7719.791169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.324 6.324 3 C 0.134 3.866 4 C 0.072 3.928 5 F -0.122 7.122 6 C -0.094 4.094 7 C -0.131 4.131 8 C 0.147 3.853 9 F -0.117 7.117 10 C -0.130 4.130 11 C 0.513 3.487 12 O -0.487 6.487 13 O -0.346 6.346 14 C 0.073 3.927 15 C 0.026 3.974 16 C -0.528 4.528 17 H 0.060 0.940 18 C 0.062 3.938 19 N -0.890 5.890 20 Si 0.900 3.100 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.275 1.275 24 H 0.106 0.894 25 H 0.066 0.934 26 H 0.054 0.946 27 H 0.158 0.842 28 H 0.159 0.841 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.029 0.971 32 H 0.028 0.972 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.291 4.522 -17.312 20.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.240 6.240 3 C 0.088 3.912 4 C 0.052 3.948 5 F -0.101 7.101 6 C -0.113 4.113 7 C -0.149 4.149 8 C 0.127 3.873 9 F -0.095 7.095 10 C -0.132 4.132 11 C 0.353 3.647 12 O -0.374 6.374 13 O -0.262 6.262 14 C 0.001 3.999 15 C -0.011 4.011 16 C -0.566 4.566 17 H 0.078 0.922 18 C -0.140 4.140 19 N -0.528 5.528 20 Si 0.728 3.272 21 H -0.200 1.200 22 H -0.211 1.211 23 H -0.200 1.200 24 H 0.124 0.876 25 H 0.085 0.915 26 H 0.072 0.928 27 H 0.176 0.824 28 H 0.177 0.823 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.048 0.952 32 H 0.047 0.953 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 10.371 4.168 -17.063 20.398 hybrid contribution -0.333 -0.405 1.002 1.130 sum 10.038 3.764 -16.062 19.311 Atomic orbital electron populations 1.23312 0.76332 1.04801 1.02111 1.86039 1.21642 1.22353 1.93988 1.18232 0.96849 0.86969 0.89165 1.17762 1.03292 0.92960 0.80797 1.91541 1.91091 1.83040 1.44397 1.21051 0.97422 0.93017 0.99833 1.20955 1.02547 1.02096 0.89343 1.17375 0.97947 0.89391 0.82632 1.91608 1.90273 1.81532 1.46100 1.19454 1.05704 0.95285 0.92788 1.20389 0.81393 0.79009 0.83862 1.90874 1.49341 1.33785 1.63419 1.86673 1.33950 1.66501 1.39113 1.23803 1.01615 0.95898 0.78634 1.19176 0.87645 0.98305 0.95954 1.20923 1.01845 1.28638 1.05197 0.92226 1.24972 0.95839 0.95149 0.98063 1.69958 1.07131 1.36568 1.39165 0.86520 0.77449 0.79975 0.83295 1.20023 1.21094 1.20026 0.87596 0.91500 0.92751 0.82435 0.82289 0.91911 0.91912 0.95246 0.95330 0.92610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.13 101.05 1.12 1.46 16 2 O -0.32 -4.80 9.73 -18.77 -0.18 -4.99 16 3 C 0.13 1.86 5.74 -38.63 -0.22 1.63 16 4 C 0.07 0.79 7.30 -39.35 -0.29 0.50 16 5 F -0.12 -1.36 17.11 2.25 0.04 -1.32 16 6 C -0.09 -0.74 10.00 -39.49 -0.39 -1.13 16 7 C -0.13 -1.10 10.00 -39.56 -0.40 -1.50 16 8 C 0.15 1.86 7.29 -38.96 -0.28 1.58 16 9 F -0.12 -1.66 16.83 2.25 0.04 -1.62 16 10 C -0.13 -1.99 5.77 -104.82 -0.60 -2.59 16 11 C 0.51 9.83 6.57 34.39 0.23 10.05 16 12 O -0.49 -10.47 16.90 -19.29 -0.33 -10.79 16 13 O -0.35 -7.12 9.99 -40.66 -0.41 -7.53 16 14 C 0.07 1.63 5.41 37.16 0.20 1.83 16 15 C 0.03 0.68 5.35 -27.88 -0.15 0.53 16 16 C -0.53 -14.71 9.11 -34.44 -0.31 -15.03 16 17 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 18 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 19 N -0.89 -26.05 13.29 55.43 0.74 -25.32 16 20 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 21 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 24 H 0.11 1.10 8.14 -51.93 -0.42 0.67 16 25 H 0.07 0.92 7.90 -51.93 -0.41 0.51 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.16 0.68 8.06 -52.49 -0.42 0.25 16 28 H 0.16 0.81 8.06 -52.49 -0.42 0.39 16 29 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 30 H 0.06 1.40 8.14 -51.92 -0.42 0.97 16 31 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 312.74 15.07 4.71 4.71 Total: -1.00 -32.14 312.74 -4.94 -37.08 By element: Atomic # 1 Polarization: -2.10 SS G_CDS: -3.33 Total: -5.44 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: -1.20 Total: -1.00 kcal Atomic # 7 Polarization: -26.05 SS G_CDS: 0.74 Total: -25.32 kcal Atomic # 8 Polarization: -22.39 SS G_CDS: -0.92 Total: -23.30 kcal Atomic # 9 Polarization: -3.02 SS G_CDS: 0.08 Total: -2.94 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.14 -4.94 -37.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756679529.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.606 kcal (2) G-P(sol) polarization free energy of solvation -32.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds