Wall clock time and date at job start Tue Mar 31 2020 05:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42911 * 1 3 3 C 1.35689 * 116.99525 * 2 1 4 4 C 1.38821 * 120.14913 * 270.01422 * 3 2 1 5 5 F 1.35094 * 119.93907 * 0.02562 * 4 3 2 6 6 C 1.38269 * 120.11914 * 179.97438 * 4 3 2 7 7 C 1.38461 * 120.42928 * 0.02562 * 6 4 3 8 8 C 1.38077 * 120.28947 * 359.71892 * 7 6 4 9 9 F 1.35102 * 120.06255 * 180.28078 * 8 7 6 10 10 C 1.40053 * 119.87296 * 0.55223 * 8 7 6 11 11 C 1.47250 * 120.20791 * 179.72447 * 10 8 7 12 12 O 1.21533 * 119.99889 * 269.72745 * 11 10 8 13 13 O 1.34763 * 120.00289 * 89.44873 * 11 10 8 14 14 C 1.45196 * 117.00315 * 180.27180 * 13 11 10 15 15 C 1.53001 * 109.47485 * 180.02562 * 14 13 11 16 16 C 1.50698 * 109.47181 * 180.02562 * 15 14 13 17 17 H 1.08003 * 120.00085 * 0.02562 * 16 15 14 18 18 C 1.37874 * 119.99811 * 180.02562 * 16 15 14 19 19 N 1.31521 * 120.00434 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00213 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.46899 * 59.99886 * 20 18 16 22 22 H 1.48494 * 109.47389 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.46923 * 300.00433 * 20 18 16 24 24 H 1.09001 * 109.46787 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47065 * 299.99598 * 1 2 3 26 26 H 1.08995 * 109.46819 * 60.00070 * 1 2 3 27 27 H 1.08000 * 119.78611 * 180.02562 * 6 4 3 28 28 H 1.07996 * 119.85728 * 180.02562 * 7 6 4 29 29 H 1.08998 * 109.47461 * 300.00597 * 14 13 11 30 30 H 1.09010 * 109.46796 * 60.00387 * 14 13 11 31 31 H 1.08998 * 109.47123 * 300.00638 * 15 14 13 32 32 H 1.08996 * 109.46839 * 60.00406 * 15 14 13 33 33 H 0.96988 * 120.00151 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 2.3612 1.8304 -1.2004 5 9 2.0547 1.2305 -2.3714 6 6 2.9884 3.0627 -1.1997 7 6 3.3067 3.6869 -0.0054 8 6 2.9954 3.0869 1.1985 9 9 3.3030 3.7026 2.3611 10 6 2.3653 1.8362 1.2123 11 6 2.0355 1.1868 2.4921 12 8 2.8374 0.4415 3.0197 13 8 0.8467 1.4234 3.0811 14 6 0.5919 0.7540 4.3441 15 6 -0.7971 1.1414 4.8556 16 6 -1.0612 0.4471 6.1668 17 1 -0.3131 -0.2050 6.5929 18 6 -2.2579 0.6443 6.8224 19 7 -3.1693 1.4379 6.3033 20 14 -2.5858 -0.2169 8.4474 21 1 -1.5607 0.1933 9.4406 22 1 -3.9337 0.1593 8.9439 23 1 -2.5229 -1.6874 8.2497 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 3.2316 3.5415 -2.1367 28 1 3.7961 4.6495 -0.0157 29 1 0.6372 -0.3253 4.1989 30 1 1.3447 1.0545 5.0729 31 1 -0.8428 2.2207 5.0007 32 1 -1.5496 0.8406 4.1268 33 1 -4.0109 1.5769 6.7648 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000756679529.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:31 Heat of formation + Delta-G solvation = -208.016928 kcal Electronic energy + Delta-G solvation = -22271.025965 eV Core-core repulsion = 18318.835957 eV Total energy + Delta-G solvation = -3952.190008 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.085 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.30986 -50.11587 -41.94312 -40.54588 -38.54108 -37.84680 -35.50479 -32.94983 -32.07808 -31.15433 -28.27861 -27.35759 -25.74258 -23.88724 -23.22397 -22.41124 -19.91375 -19.38031 -19.12204 -18.67520 -18.16578 -17.72249 -17.39377 -17.33965 -16.99729 -16.71928 -16.51362 -16.17725 -15.80508 -15.55107 -15.10776 -14.77469 -14.40795 -14.24981 -13.89399 -13.43598 -13.23732 -13.22233 -13.05507 -12.65862 -12.64290 -12.62755 -12.14192 -11.71572 -11.63098 -11.49700 -11.36768 -10.63548 -10.44347 -9.84758 -8.29439 -6.43209 -0.65003 -0.45550 0.67484 1.34689 1.43094 1.43765 1.52959 1.80506 2.22430 2.37539 2.83983 2.90255 3.05035 3.28178 3.51794 3.64419 3.89541 4.10664 4.11683 4.21266 4.26242 4.44105 4.49079 4.58285 4.63404 4.69067 4.80614 5.04108 5.29829 5.35920 5.39323 5.67274 5.97886 6.01504 6.34034 6.69114 7.26698 8.82924 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.024904 B = 0.003889 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.040879 B = 7198.029531 C = 7719.791169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.347 6.347 3 C 0.114 3.886 4 C 0.072 3.928 5 F -0.122 7.122 6 C -0.061 4.061 7 C -0.103 4.103 8 C 0.131 3.869 9 F -0.132 7.132 10 C -0.165 4.165 11 C 0.514 3.486 12 O -0.518 6.518 13 O -0.352 6.352 14 C 0.087 3.913 15 C 0.035 3.965 16 C -0.553 4.553 17 H 0.065 0.935 18 C 0.010 3.990 19 N -0.925 5.925 20 Si 0.973 3.027 21 H -0.266 1.266 22 H -0.278 1.278 23 H -0.266 1.266 24 H 0.119 0.881 25 H 0.042 0.958 26 H 0.076 0.924 27 H 0.209 0.791 28 H 0.205 0.795 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.007 0.993 32 H 0.010 0.990 33 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.309 5.507 -18.828 22.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.264 6.264 3 C 0.068 3.932 4 C 0.052 3.948 5 F -0.100 7.100 6 C -0.079 4.079 7 C -0.121 4.121 8 C 0.111 3.889 9 F -0.110 7.110 10 C -0.168 4.168 11 C 0.358 3.642 12 O -0.407 6.407 13 O -0.269 6.269 14 C 0.014 3.986 15 C -0.003 4.003 16 C -0.591 4.591 17 H 0.083 0.917 18 C -0.190 4.190 19 N -0.564 5.564 20 Si 0.797 3.203 21 H -0.191 1.191 22 H -0.203 1.203 23 H -0.190 1.190 24 H 0.138 0.862 25 H 0.061 0.939 26 H 0.095 0.905 27 H 0.226 0.774 28 H 0.222 0.778 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.025 0.975 32 H 0.029 0.971 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 11.399 5.157 -18.600 22.416 hybrid contribution -0.620 -0.644 1.334 1.606 sum 10.779 4.514 -17.266 20.848 Atomic orbital electron populations 1.23410 0.75625 1.05738 1.01966 1.85997 1.22614 1.23595 1.94162 1.18464 0.97789 0.87085 0.89875 1.17889 1.03469 0.93776 0.79636 1.91548 1.91154 1.83310 1.44021 1.21625 0.93828 0.90910 1.01563 1.21459 1.00390 1.02967 0.87307 1.17783 0.98644 0.88783 0.83725 1.91570 1.90501 1.81597 1.47336 1.19394 1.09131 0.97239 0.90994 1.21126 0.80025 0.78323 0.84774 1.90832 1.49889 1.35326 1.64698 1.86665 1.35442 1.66435 1.38315 1.23358 0.99590 0.95929 0.79716 1.18970 0.89168 0.96673 0.95448 1.21309 1.02497 1.29164 1.06097 0.91707 1.25936 0.95391 0.95675 1.01969 1.70078 1.07662 1.37740 1.40905 0.85379 0.77601 0.78998 0.78354 1.19129 1.20319 1.19032 0.86244 0.93915 0.90523 0.77380 0.77799 0.91794 0.91982 0.97463 0.97149 0.92236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 11.13 113.37 1.26 1.90 16 2 O -0.35 -10.52 9.73 -90.08 -0.88 -11.40 16 3 C 0.11 3.11 5.74 22.89 0.13 3.25 16 4 C 0.07 1.39 7.30 22.42 0.16 1.55 16 5 F -0.12 -2.38 17.11 44.97 0.77 -1.61 16 6 C -0.06 -0.65 10.00 22.33 0.22 -0.42 16 7 C -0.10 -1.29 10.00 22.28 0.22 -1.07 16 8 C 0.13 3.16 7.29 22.67 0.17 3.32 16 9 F -0.13 -3.70 16.83 44.97 0.76 -2.94 16 10 C -0.16 -5.12 5.77 -19.99 -0.12 -5.23 16 11 C 0.51 20.68 6.57 70.19 0.46 21.14 16 12 O -0.52 -23.36 16.90 19.73 0.33 -23.03 16 13 O -0.35 -15.32 9.99 -56.74 -0.57 -15.89 16 14 C 0.09 4.08 5.41 71.98 0.39 4.47 16 15 C 0.03 1.88 5.35 29.85 0.16 2.04 16 16 C -0.55 -31.55 9.11 25.60 0.23 -31.31 16 17 H 0.06 3.54 7.74 -2.91 -0.02 3.52 16 18 C 0.01 0.55 5.46 84.65 0.46 1.01 16 19 N -0.93 -55.14 13.29 21.45 0.28 -54.85 16 20 Si 0.97 43.57 29.54 68.60 2.03 45.60 16 21 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 22 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 23 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 24 H 0.12 2.55 8.14 -2.39 -0.02 2.53 16 25 H 0.04 1.26 7.90 -2.39 -0.02 1.24 16 26 H 0.08 1.52 8.14 -2.39 -0.02 1.51 16 27 H 0.21 0.22 8.06 -2.91 -0.02 0.20 16 28 H 0.21 0.79 8.06 -2.91 -0.02 0.76 16 29 H 0.06 2.95 8.14 -2.39 -0.02 2.93 16 30 H 0.06 2.89 8.14 -2.38 -0.02 2.87 16 31 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.27 14.95 8.31 -92.72 -0.77 14.18 16 Total: -1.00 -73.29 312.74 7.63 -65.66 By element: Atomic # 1 Polarization: -3.32 SS G_CDS: 1.15 Total: -2.18 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: 3.76 Total: 0.65 kcal Atomic # 7 Polarization: -55.14 SS G_CDS: 0.28 Total: -54.85 kcal Atomic # 8 Polarization: -49.21 SS G_CDS: -1.11 Total: -50.32 kcal Atomic # 9 Polarization: -6.08 SS G_CDS: 1.53 Total: -4.55 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -73.29 7.63 -65.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756679529.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.361 kcal (2) G-P(sol) polarization free energy of solvation -73.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -215.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds