Wall clock time and date at job start Tue Mar 31 2020 05:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30873 * 1 3 3 Si 1.86801 * 120.00208 * 2 1 4 4 H 1.48496 * 109.47519 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46853 * 300.00197 * 3 2 1 6 6 H 1.48498 * 109.46809 * 59.99736 * 3 2 1 7 7 C 1.39897 * 120.00340 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00668 * 175.54745 * 7 2 1 9 9 C 1.41165 * 119.99840 * 355.54373 * 7 2 1 10 10 C 1.40872 * 120.15934 * 35.04043 * 9 7 2 11 11 C 1.36372 * 119.82147 * 180.22936 * 10 9 7 12 12 C 1.39485 * 120.17322 * 359.50112 * 11 10 9 13 13 N 1.39242 * 119.83416 * 180.25270 * 12 11 10 14 14 C 1.34778 * 119.99835 * 324.70947 * 13 12 11 15 15 O 1.21581 * 120.00266 * 4.28415 * 14 13 12 16 16 N 1.34782 * 119.99219 * 184.29089 * 14 13 12 17 17 O 1.41609 * 119.99392 * 179.97438 * 16 14 13 18 18 C 1.42901 * 113.99777 * 180.02562 * 17 16 14 19 19 C 1.52993 * 109.47077 * 180.02562 * 18 17 16 20 20 F 1.39898 * 109.47154 * 300.00216 * 19 18 17 21 21 F 1.39907 * 109.46969 * 59.99834 * 19 18 17 22 22 C 1.39481 * 120.33073 * 0.23205 * 12 11 10 23 23 C 1.36375 * 120.16491 * 0.02562 * 22 12 11 24 24 H 0.96997 * 120.00755 * 0.02562 * 1 2 3 25 25 H 1.07991 * 120.08801 * 359.97438 * 10 9 7 26 26 H 1.08001 * 119.91508 * 179.77236 * 11 10 9 27 27 H 0.96995 * 119.99742 * 144.70553 * 13 12 11 28 28 H 0.96996 * 120.00480 * 359.97438 * 16 14 13 29 29 H 1.09004 * 109.46846 * 300.00290 * 18 17 16 30 30 H 1.08997 * 109.47400 * 59.99861 * 18 17 16 31 31 H 1.08994 * 109.47110 * 179.97438 * 19 18 17 32 32 H 1.07993 * 119.91229 * 180.02562 * 22 12 11 33 33 H 1.08002 * 120.07934 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.7028 1.3464 0.0006 5 1 1.8840 2.3964 -1.2125 6 1 1.8840 2.3964 1.2125 7 6 2.0083 -1.2115 0.0005 8 1 3.0858 -1.2130 -0.0721 9 6 1.3057 -2.4322 0.0961 10 6 0.0440 -2.5723 -0.5147 11 6 -0.6308 -3.7530 -0.4141 12 6 -0.0703 -4.8237 0.2824 13 7 -0.7631 -6.0279 0.3763 14 6 -2.1072 -6.0259 0.4771 15 8 -2.7205 -4.9784 0.4078 16 7 -2.7712 -7.1852 0.6548 17 8 -4.1833 -7.1831 0.7613 18 6 -4.7540 -8.4799 0.9477 19 6 -6.2757 -8.3577 1.0486 20 9 -6.6069 -7.5417 2.1356 21 9 -6.7771 -7.7923 -0.1288 22 6 1.1810 -4.6943 0.8851 23 6 1.8654 -3.5180 0.7975 24 1 -0.4851 0.8400 -0.0004 25 1 -0.3894 -1.7455 -1.0576 26 1 -1.5998 -3.8609 -0.8787 27 1 -0.2785 -6.8680 0.3690 28 1 -2.2819 -8.0209 0.7098 29 1 -4.4961 -9.1155 0.1005 30 1 -4.3629 -8.9206 1.8647 31 1 -6.7110 -9.3468 1.1903 32 1 1.6087 -5.5277 1.4223 33 1 2.8343 -3.4194 1.2642 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000759926764.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:18 Heat of formation + Delta-G solvation = -91.600629 kcal Electronic energy + Delta-G solvation = -21469.028831 eV Core-core repulsion = 17554.179764 eV Total energy + Delta-G solvation = -3914.849067 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.092 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.23604 -47.26874 -39.83876 -37.95757 -36.93252 -34.38349 -33.14442 -32.21869 -29.81459 -29.42891 -28.50529 -24.84027 -23.45649 -21.84095 -21.14452 -20.14076 -18.85008 -18.18361 -17.78796 -17.28880 -17.20292 -16.66197 -15.87952 -15.72672 -15.13453 -14.56367 -14.37762 -14.02062 -13.87344 -13.60533 -13.58179 -13.03408 -12.68995 -12.62666 -12.08549 -11.83060 -11.55641 -11.49176 -11.42825 -11.13137 -10.87350 -10.48446 -9.97593 -9.86500 -9.60731 -9.08366 -8.90093 -8.76619 -7.48416 -6.85769 -6.54854 -4.29251 1.47446 2.72784 3.08322 3.14216 3.16705 3.20560 3.34067 3.65695 3.72010 3.88590 4.00620 4.02856 4.41707 4.53963 4.76552 4.82071 4.90209 5.68828 6.14093 6.35282 6.58526 6.73043 6.82068 7.07823 7.16622 7.28759 7.36589 7.68705 7.82251 8.02226 8.13772 8.32141 8.41527 8.71981 8.94546 8.97833 9.08900 10.36184 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.031503 B = 0.003031 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.583754 B = 9236.366122 C = 9850.581699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.069 3.931 3 Si 0.915 3.085 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.463 4.463 8 H 0.076 0.924 9 C 0.100 3.900 10 C -0.143 4.143 11 C -0.093 4.093 12 C 0.021 3.979 13 N -0.656 5.656 14 C 0.709 3.291 15 O -0.549 6.549 16 N -0.619 5.619 17 O -0.116 6.116 18 C -0.024 4.024 19 C 0.281 3.719 20 F -0.195 7.195 21 F -0.195 7.195 22 C -0.112 4.112 23 C -0.204 4.204 24 H 0.278 0.722 25 H 0.131 0.869 26 H 0.110 0.890 27 H 0.392 0.608 28 H 0.400 0.600 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.134 0.866 32 H 0.091 0.909 33 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.764 -18.832 1.525 20.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.147 4.147 3 Si 0.740 3.260 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.494 4.494 8 H 0.094 0.906 9 C 0.097 3.903 10 C -0.163 4.163 11 C -0.113 4.113 12 C -0.071 4.071 13 N -0.306 5.306 14 C 0.410 3.590 15 O -0.422 6.422 16 N -0.326 5.326 17 O -0.118 6.118 18 C -0.103 4.103 19 C 0.226 3.774 20 F -0.176 7.176 21 F -0.177 7.177 22 C -0.133 4.133 23 C -0.224 4.224 24 H 0.089 0.911 25 H 0.148 0.852 26 H 0.128 0.872 27 H 0.225 0.775 28 H 0.239 0.761 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.151 0.849 32 H 0.109 0.891 33 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.727 -17.461 1.463 19.150 hybrid contribution 0.571 -0.381 0.273 0.739 sum -7.156 -17.841 1.736 19.301 Atomic orbital electron populations 1.69796 1.07233 1.28696 1.37585 1.25898 0.94922 1.01174 0.92700 0.86161 0.80469 0.80994 0.78395 1.18651 1.20014 1.20030 1.19509 0.94660 0.90214 1.45005 0.90593 1.17741 0.92253 0.91880 0.88384 1.21306 0.96941 0.96021 1.01993 1.20703 0.99070 0.93281 0.98243 1.17044 0.94488 0.86089 1.09429 1.41836 1.02949 1.08854 1.76983 1.15525 0.82107 0.82336 0.79025 1.90987 1.66401 1.29267 1.55506 1.46275 0.94048 1.09100 1.83198 1.90703 1.01629 1.23472 1.96042 1.24201 0.93040 0.88837 1.04256 1.21888 0.90941 0.92065 0.72483 1.93058 1.93535 1.76216 1.54818 1.93057 1.88724 1.87604 1.48277 1.20028 0.94988 0.97555 1.00687 1.20671 1.01167 0.94514 1.06047 0.91094 0.85157 0.87225 0.77452 0.76083 0.89026 0.89004 0.84941 0.89099 0.88455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.90 10.61 55.55 0.59 -21.32 16 2 C 0.07 1.78 5.42 -17.34 -0.09 1.68 16 3 Si 0.91 19.35 29.56 -169.99 -5.03 14.33 16 4 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 5 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 6 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 7 C -0.46 -12.44 9.02 -37.85 -0.34 -12.78 16 8 H 0.08 1.94 7.85 -52.49 -0.41 1.53 16 9 C 0.10 2.70 5.55 -106.80 -0.59 2.10 16 10 C -0.14 -3.89 8.61 -39.26 -0.34 -4.22 16 11 C -0.09 -2.36 8.61 -39.79 -0.34 -2.71 16 12 C 0.02 0.48 6.31 -83.57 -0.53 -0.05 16 13 N -0.66 -11.42 5.31 -14.10 -0.07 -11.50 16 14 C 0.71 13.47 8.54 -86.91 -0.74 12.73 16 15 O -0.55 -13.65 14.17 -12.85 -0.18 -13.83 16 16 N -0.62 -8.44 6.40 27.63 0.18 -8.26 16 17 O -0.12 -1.69 11.00 -29.62 -0.33 -2.01 16 18 C -0.02 -0.18 6.45 37.15 0.24 0.06 16 19 C 0.28 2.16 5.63 37.15 0.21 2.37 16 20 F -0.19 -2.22 17.28 2.25 0.04 -2.18 16 21 F -0.20 -2.20 17.28 2.25 0.04 -2.16 16 22 C -0.11 -2.41 9.90 -39.79 -0.39 -2.81 16 23 C -0.20 -4.91 9.74 -39.26 -0.38 -5.29 16 24 H 0.28 6.94 8.30 -40.82 -0.34 6.60 16 25 H 0.13 3.73 6.15 -52.49 -0.32 3.40 16 26 H 0.11 2.87 6.22 -52.49 -0.33 2.54 16 27 H 0.39 4.88 8.83 -40.82 -0.36 4.52 16 28 H 0.40 3.34 8.56 -40.82 -0.35 2.99 16 29 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.13 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.09 1.62 8.06 -52.49 -0.42 1.20 16 33 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 LS Contribution 303.15 15.07 4.57 4.57 Total: -1.00 -36.03 303.15 -6.52 -42.55 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -3.02 Total: 8.73 kcal Atomic # 6 Polarization: -5.61 SS G_CDS: -3.31 Total: -8.91 kcal Atomic # 7 Polarization: -41.77 SS G_CDS: 0.69 Total: -41.07 kcal Atomic # 8 Polarization: -15.34 SS G_CDS: -0.51 Total: -15.85 kcal Atomic # 9 Polarization: -4.42 SS G_CDS: 0.08 Total: -4.35 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.03 Total: 14.33 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -36.03 -6.52 -42.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759926764.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.048 kcal (2) G-P(sol) polarization free energy of solvation -36.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds