Wall clock time and date at job start Tue Mar 31 2020 05:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30873 * 1 3 3 Si 1.86801 * 120.00208 * 2 1 4 4 H 1.48496 * 109.47519 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46853 * 300.00197 * 3 2 1 6 6 H 1.48498 * 109.46809 * 59.99736 * 3 2 1 7 7 C 1.39897 * 120.00340 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00668 * 175.54745 * 7 2 1 9 9 C 1.41165 * 119.99840 * 355.54373 * 7 2 1 10 10 C 1.40872 * 120.15934 * 35.04043 * 9 7 2 11 11 C 1.36372 * 119.82147 * 180.22936 * 10 9 7 12 12 C 1.39485 * 120.17322 * 359.50112 * 11 10 9 13 13 N 1.39242 * 119.83416 * 180.25270 * 12 11 10 14 14 C 1.34778 * 119.99835 * 324.70947 * 13 12 11 15 15 O 1.21581 * 120.00266 * 4.28415 * 14 13 12 16 16 N 1.34782 * 119.99219 * 184.29089 * 14 13 12 17 17 O 1.41609 * 119.99392 * 179.97438 * 16 14 13 18 18 C 1.42901 * 113.99777 * 180.02562 * 17 16 14 19 19 C 1.52993 * 109.47077 * 180.02562 * 18 17 16 20 20 F 1.39898 * 109.47154 * 300.00216 * 19 18 17 21 21 F 1.39907 * 109.46969 * 59.99834 * 19 18 17 22 22 C 1.39481 * 120.33073 * 0.23205 * 12 11 10 23 23 C 1.36375 * 120.16491 * 0.02562 * 22 12 11 24 24 H 0.96997 * 120.00755 * 0.02562 * 1 2 3 25 25 H 1.07991 * 120.08801 * 359.97438 * 10 9 7 26 26 H 1.08001 * 119.91508 * 179.77236 * 11 10 9 27 27 H 0.96995 * 119.99742 * 144.70553 * 13 12 11 28 28 H 0.96996 * 120.00480 * 359.97438 * 16 14 13 29 29 H 1.09004 * 109.46846 * 300.00290 * 18 17 16 30 30 H 1.08997 * 109.47400 * 59.99861 * 18 17 16 31 31 H 1.08994 * 109.47110 * 179.97438 * 19 18 17 32 32 H 1.07993 * 119.91229 * 180.02562 * 22 12 11 33 33 H 1.08002 * 120.07934 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.7028 1.3464 0.0006 5 1 1.8840 2.3964 -1.2125 6 1 1.8840 2.3964 1.2125 7 6 2.0083 -1.2115 0.0005 8 1 3.0858 -1.2130 -0.0721 9 6 1.3057 -2.4322 0.0961 10 6 0.0440 -2.5723 -0.5147 11 6 -0.6308 -3.7530 -0.4141 12 6 -0.0703 -4.8237 0.2824 13 7 -0.7631 -6.0279 0.3763 14 6 -2.1072 -6.0259 0.4771 15 8 -2.7205 -4.9784 0.4078 16 7 -2.7712 -7.1852 0.6548 17 8 -4.1833 -7.1831 0.7613 18 6 -4.7540 -8.4799 0.9477 19 6 -6.2757 -8.3577 1.0486 20 9 -6.6069 -7.5417 2.1356 21 9 -6.7771 -7.7923 -0.1288 22 6 1.1810 -4.6943 0.8851 23 6 1.8654 -3.5180 0.7975 24 1 -0.4851 0.8400 -0.0004 25 1 -0.3894 -1.7455 -1.0576 26 1 -1.5998 -3.8609 -0.8787 27 1 -0.2785 -6.8680 0.3690 28 1 -2.2819 -8.0209 0.7098 29 1 -4.4961 -9.1155 0.1005 30 1 -4.3629 -8.9206 1.8647 31 1 -6.7110 -9.3468 1.1903 32 1 1.6087 -5.5277 1.4223 33 1 2.8343 -3.4194 1.2642 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759926764.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:18 Heat of formation + Delta-G solvation = -117.223404 kcal Electronic energy + Delta-G solvation = -21470.139918 eV Core-core repulsion = 17554.179764 eV Total energy + Delta-G solvation = -3915.960154 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.092 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.94810 -48.01669 -41.37367 -39.38979 -38.38036 -36.15096 -34.86792 -33.49838 -31.38639 -30.92233 -30.01085 -26.69134 -24.10368 -23.51282 -22.98086 -21.79261 -19.84866 -19.56161 -19.17824 -18.48770 -18.21374 -17.54727 -17.27477 -17.04171 -16.73947 -15.85306 -15.78477 -15.64628 -14.90651 -14.76539 -14.55308 -14.50831 -14.37823 -13.94410 -13.64684 -13.36574 -13.29625 -12.87970 -12.64525 -12.36899 -12.30600 -12.16960 -11.80160 -11.66660 -11.37779 -10.94817 -10.58137 -10.09824 -9.41574 -8.71189 -8.46607 -6.29932 0.36382 0.91158 1.17424 1.40593 1.48695 1.56942 2.10832 2.25974 2.68773 2.84688 2.90657 3.29389 3.45362 3.47529 3.72745 4.05128 4.23924 4.37471 4.48093 4.52069 4.96721 5.11677 5.17199 5.34511 5.41896 5.47579 5.74263 5.79538 6.09688 6.12681 6.17739 6.39728 6.74674 6.99043 7.04475 7.07525 7.60060 8.46489 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.031503 B = 0.003031 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.583754 B = 9236.366122 C = 9850.581699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.020 3.980 3 Si 0.991 3.009 4 H -0.252 1.252 5 H -0.269 1.269 6 H -0.271 1.271 7 C -0.495 4.495 8 H 0.082 0.918 9 C 0.065 3.935 10 C -0.168 4.168 11 C -0.110 4.110 12 C 0.038 3.962 13 N -0.639 5.639 14 C 0.706 3.294 15 O -0.616 6.616 16 N -0.591 5.591 17 O -0.161 6.161 18 C -0.034 4.034 19 C 0.269 3.731 20 F -0.221 7.221 21 F -0.221 7.221 22 C -0.101 4.101 23 C -0.207 4.207 24 H 0.281 0.719 25 H 0.102 0.898 26 H 0.093 0.907 27 H 0.422 0.578 28 H 0.429 0.571 29 H 0.125 0.875 30 H 0.125 0.875 31 H 0.198 0.802 32 H 0.143 0.857 33 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.671 -21.833 2.633 22.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.191 4.191 3 Si 0.812 3.188 4 H -0.175 1.175 5 H -0.194 1.194 6 H -0.196 1.196 7 C -0.526 4.526 8 H 0.100 0.900 9 C 0.063 3.937 10 C -0.188 4.188 11 C -0.131 4.131 12 C -0.055 4.055 13 N -0.292 5.292 14 C 0.407 3.593 15 O -0.494 6.494 16 N -0.299 5.299 17 O -0.164 6.164 18 C -0.112 4.112 19 C 0.215 3.785 20 F -0.203 7.203 21 F -0.203 7.203 22 C -0.121 4.121 23 C -0.227 4.227 24 H 0.091 0.909 25 H 0.120 0.880 26 H 0.111 0.889 27 H 0.260 0.740 28 H 0.273 0.727 29 H 0.143 0.857 30 H 0.143 0.857 31 H 0.215 0.785 32 H 0.161 0.839 33 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -6.613 -20.602 2.576 21.790 hybrid contribution 0.100 0.256 -0.049 0.279 sum -6.512 -20.346 2.527 21.512 Atomic orbital electron populations 1.69932 1.09011 1.29694 1.39062 1.26872 0.95648 1.04843 0.91733 0.85017 0.79330 0.75958 0.78455 1.17497 1.19428 1.19616 1.19804 0.95040 0.91081 1.46631 0.90026 1.18080 0.92522 0.93401 0.89688 1.21146 0.98080 0.96145 1.03475 1.20692 0.98572 0.94279 0.99532 1.17064 0.94707 0.86690 1.07080 1.41470 1.02701 1.08621 1.76419 1.15678 0.82274 0.82797 0.78522 1.90962 1.67876 1.32301 1.58224 1.45653 0.94650 1.08593 1.81022 1.90693 1.01125 1.28209 1.96389 1.24721 0.92491 0.86600 1.07350 1.22823 0.91315 0.93791 0.70601 1.93002 1.93773 1.77411 1.56106 1.93004 1.89110 1.88304 1.49862 1.20413 0.93973 0.98203 0.99535 1.20971 1.01987 0.94514 1.05244 0.90867 0.88029 0.88936 0.73975 0.72666 0.85703 0.85745 0.78543 0.83891 0.86528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -48.56 10.61 21.82 0.23 -48.33 16 2 C 0.02 1.07 5.42 85.24 0.46 1.53 16 3 Si 0.99 40.50 29.56 68.60 2.03 42.53 16 4 H -0.25 -9.71 7.11 99.48 0.71 -9.00 16 5 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 6 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 7 C -0.49 -27.33 9.02 23.39 0.21 -27.12 16 8 H 0.08 4.23 7.85 -2.91 -0.02 4.21 16 9 C 0.07 3.63 5.55 -21.27 -0.12 3.51 16 10 C -0.17 -9.68 8.61 22.48 0.19 -9.49 16 11 C -0.11 -5.84 8.61 22.13 0.19 -5.65 16 12 C 0.04 1.66 6.31 38.57 0.24 1.90 16 13 N -0.64 -20.72 5.31 -316.77 -1.68 -22.40 16 14 C 0.71 26.08 8.54 179.05 1.53 27.61 16 15 O -0.62 -31.42 14.17 13.38 0.19 -31.23 16 16 N -0.59 -14.66 6.40 -184.74 -1.18 -15.84 16 17 O -0.16 -4.41 11.00 -21.45 -0.24 -4.65 16 18 C -0.03 -0.40 6.45 71.98 0.46 0.06 16 19 C 0.27 3.45 5.63 71.98 0.41 3.85 16 20 F -0.22 -4.82 17.28 44.97 0.78 -4.04 16 21 F -0.22 -4.78 17.28 44.97 0.78 -4.00 16 22 C -0.10 -4.07 9.90 22.13 0.22 -3.85 16 23 C -0.21 -9.75 9.74 22.48 0.22 -9.53 16 24 H 0.28 14.77 8.30 -92.71 -0.77 14.00 16 25 H 0.10 6.32 6.15 -2.92 -0.02 6.30 16 26 H 0.09 5.15 6.22 -2.91 -0.02 5.13 16 27 H 0.42 8.66 8.83 -92.71 -0.82 7.84 16 28 H 0.43 5.38 8.56 -92.71 -0.79 4.58 16 29 H 0.13 0.64 8.14 -2.38 -0.02 0.63 16 30 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.20 -0.04 8.14 -2.39 -0.02 -0.06 16 32 H 0.14 4.29 8.06 -2.91 -0.02 4.27 16 33 H 0.12 4.95 8.06 -2.91 -0.02 4.92 16 Total: -1.00 -86.18 303.15 4.50 -81.68 By element: Atomic # 1 Polarization: 23.87 SS G_CDS: -0.43 Total: 23.45 kcal Atomic # 6 Polarization: -21.18 SS G_CDS: 4.02 Total: -17.16 kcal Atomic # 7 Polarization: -83.95 SS G_CDS: -2.63 Total: -86.58 kcal Atomic # 8 Polarization: -35.84 SS G_CDS: -0.05 Total: -35.88 kcal Atomic # 9 Polarization: -9.59 SS G_CDS: 1.55 Total: -8.04 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.53 kcal Total: -86.18 4.50 -81.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759926764.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.541 kcal (2) G-P(sol) polarization free energy of solvation -86.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds