Wall clock time and date at job start Tue Mar 31 2020 06:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86801 * 119.99623 * 2 1 4 4 H 1.48500 * 109.46688 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47390 * 300.00465 * 3 2 1 6 6 H 1.48498 * 109.47109 * 60.00716 * 3 2 1 7 7 C 1.39941 * 120.00153 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00166 * 197.85452 * 7 2 1 9 9 C 1.41398 * 119.99788 * 17.85885 * 7 2 1 10 10 C 1.40723 * 120.24004 * 204.37923 * 9 7 2 11 11 C 1.37617 * 119.74326 * 180.02562 * 10 9 7 12 12 C 1.38638 * 120.25011 * 0.02562 * 11 10 9 13 13 C 1.50697 * 119.75355 * 179.97438 * 12 11 10 14 14 O 1.45202 * 109.46775 * 90.00018 * 13 12 11 15 15 C 1.34234 * 116.99635 * 180.02562 * 14 13 12 16 16 O 1.20829 * 119.99898 * 0.02562 * 15 14 13 17 17 C 1.50692 * 119.99821 * 180.02562 * 15 14 13 18 18 C 1.50702 * 109.47100 * 180.02562 * 17 15 14 19 19 C 1.41377 * 126.58645 * 89.99774 * 18 17 15 20 20 C 1.34514 * 106.84408 * 180.02562 * 19 18 17 21 21 O 1.34298 * 108.41913 * 359.97438 * 20 19 18 22 22 C 1.34307 * 109.47863 * 0.02562 * 21 20 19 23 23 C 1.38634 * 120.50095 * 0.26170 * 12 11 10 24 24 C 1.37625 * 120.24684 * 359.43878 * 23 12 11 25 25 H 0.96998 * 120.00224 * 359.97438 * 1 2 3 26 26 H 1.07996 * 120.12769 * 359.97438 * 10 9 7 27 27 H 1.07999 * 119.87781 * 180.02562 * 11 10 9 28 28 H 1.09009 * 109.46778 * 330.00731 * 13 12 11 29 29 H 1.08991 * 109.47267 * 210.00377 * 13 12 11 30 30 H 1.09001 * 109.47965 * 59.99657 * 17 15 14 31 31 H 1.09004 * 109.46863 * 299.99506 * 17 15 14 32 32 H 1.08009 * 126.57407 * 359.76878 * 19 18 17 33 33 H 1.08001 * 125.78597 * 180.02562 * 20 19 18 34 34 H 1.07997 * 125.78681 * 180.02562 * 22 21 20 35 35 H 1.07996 * 119.87847 * 179.70376 * 23 12 11 36 36 H 1.08002 * 120.12820 * 180.27228 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3464 -0.0006 5 1 1.8833 2.3966 -1.2124 6 1 1.8835 2.3964 1.2126 7 6 2.0080 -1.2119 -0.0005 8 1 3.0490 -1.2346 0.2862 9 6 1.3521 -2.4068 -0.3766 10 6 1.8260 -3.6499 0.0820 11 6 1.1801 -4.8065 -0.2908 12 6 0.0670 -4.7501 -1.1153 13 6 -0.6314 -6.0237 -1.5170 14 8 -1.6653 -6.3355 -0.5464 15 6 -2.3857 -7.4480 -0.7596 16 8 -2.1594 -8.1384 -1.7251 17 6 -3.4765 -7.8356 0.2051 18 6 -4.1264 -9.1138 -0.2587 19 6 -3.7406 -10.4291 0.0876 20 6 -4.5861 -11.2625 -0.5449 21 8 -5.4588 -10.5258 -1.2515 22 6 -5.1848 -9.2220 -1.0819 23 6 -0.4051 -3.5315 -1.5779 24 6 0.2214 -2.3617 -1.2129 25 1 -0.4850 0.8400 0.0004 26 1 2.6936 -3.6962 0.7234 27 1 1.5416 -5.7617 0.0603 28 1 0.0915 -6.8388 -1.5524 29 1 -1.0831 -5.8956 -2.5007 30 1 -4.2231 -7.0426 0.2474 31 1 -3.0486 -7.9850 1.1964 32 1 -2.9214 -10.7108 0.7326 33 1 -4.5668 -12.3411 -0.4926 34 1 -5.7232 -8.4000 -1.5298 35 1 -1.2701 -3.4996 -2.2236 36 1 -0.1506 -1.4130 -1.5709 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000772574240.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:10 Heat of formation + Delta-G solvation = -59.933101 kcal Electronic energy + Delta-G solvation = -20656.181514 eV Core-core repulsion = 17264.642433 eV Total energy + Delta-G solvation = -3391.539081 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.104 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.69432 -40.00912 -37.69635 -36.09972 -34.14193 -33.86941 -31.00334 -30.47153 -29.37805 -28.34211 -26.94829 -23.88168 -21.78051 -21.64052 -21.08971 -20.08407 -20.01734 -17.60455 -17.42507 -17.36232 -16.20841 -16.12525 -15.78060 -15.32871 -14.84856 -14.25451 -14.05000 -13.80783 -13.32031 -12.93793 -12.80022 -12.70022 -12.33260 -12.26005 -12.02722 -11.73468 -11.63948 -11.19307 -10.99533 -10.83940 -10.45540 -10.29603 -10.12967 -9.84818 -9.67231 -9.47973 -9.23211 -8.69464 -7.57054 -7.45740 -6.87517 -4.47111 1.61618 2.26704 2.49371 2.57307 2.97102 2.99794 3.01296 3.03171 3.07782 3.53495 3.85191 4.52382 4.56842 4.63369 4.84686 5.23498 5.25693 5.40850 5.53101 5.61695 5.67478 5.72064 5.84862 5.99431 6.08753 6.24756 6.30681 6.31968 6.85738 6.91142 6.95228 6.96910 7.17731 7.25878 7.51042 7.73469 7.95270 8.00408 8.12533 8.18553 8.53353 8.77960 8.86097 10.06278 Molecular weight = 286.10amu Principal moments of inertia in cm(-1) A = 0.045515 B = 0.002616 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.030305 B =10701.044362 C =10943.229410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.075 3.925 3 Si 0.910 3.090 4 H -0.259 1.259 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.456 4.456 8 H 0.081 0.919 9 C 0.118 3.882 10 C -0.230 4.230 11 C -0.064 4.064 12 C -0.236 4.236 13 C 0.137 3.863 14 O -0.351 6.351 15 C 0.454 3.546 16 O -0.514 6.514 17 C -0.046 4.046 18 C -0.170 4.170 19 C -0.198 4.198 20 C -0.046 4.046 21 O -0.177 6.177 22 C -0.023 4.023 23 C -0.076 4.076 24 C -0.171 4.171 25 H 0.282 0.718 26 H 0.095 0.905 27 H 0.089 0.911 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.112 0.888 31 H 0.113 0.887 32 H 0.147 0.853 33 H 0.202 0.798 34 H 0.202 0.798 35 H 0.088 0.912 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.387 -12.724 0.558 15.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.144 4.144 3 Si 0.734 3.266 4 H -0.183 1.183 5 H -0.196 1.196 6 H -0.199 1.199 7 C -0.484 4.484 8 H 0.099 0.901 9 C 0.115 3.885 10 C -0.250 4.250 11 C -0.082 4.082 12 C -0.237 4.237 13 C 0.065 3.935 14 O -0.268 6.268 15 C 0.297 3.703 16 O -0.403 6.403 17 C -0.084 4.084 18 C -0.171 4.171 19 C -0.217 4.217 20 C -0.113 4.113 21 O -0.072 6.072 22 C -0.091 4.091 23 C -0.094 4.094 24 C -0.190 4.190 25 H 0.093 0.907 26 H 0.113 0.887 27 H 0.107 0.893 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.131 0.869 31 H 0.131 0.869 32 H 0.165 0.835 33 H 0.218 0.782 34 H 0.219 0.781 35 H 0.107 0.893 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -8.710 -12.849 0.090 15.523 hybrid contribution 0.587 0.794 0.101 0.992 sum -8.123 -12.055 0.191 14.538 Atomic orbital electron populations 1.69836 1.07680 1.29424 1.34011 1.25977 0.94763 1.01557 0.92135 0.86235 0.81028 0.80693 0.78669 1.18289 1.19588 1.19874 1.19706 0.98250 0.91230 1.39261 0.90129 1.17694 0.90805 0.92090 0.87901 1.20967 1.04121 0.92682 1.07187 1.20391 0.95130 0.96641 0.96067 1.18689 1.01256 0.91985 1.11769 1.21712 0.86530 0.95880 0.89412 1.86720 1.46076 1.40926 1.53033 1.23552 0.82166 0.79146 0.85449 1.90634 1.67386 1.52259 1.30045 1.19622 0.95373 0.94848 0.98549 1.19859 0.99023 0.94724 1.03537 1.21700 1.02665 0.92114 1.05189 1.23947 0.92436 0.97508 0.97380 1.84059 1.48830 1.17372 1.56984 1.23843 0.99970 0.83934 1.01327 1.20539 0.97681 0.92466 0.98743 1.21296 0.99702 0.96653 1.01336 0.90685 0.88712 0.89321 0.92191 0.92115 0.86944 0.86867 0.83472 0.78159 0.78123 0.89337 0.86231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.74 10.96 55.55 0.61 -19.13 16 2 C 0.07 1.82 5.14 -17.34 -0.09 1.73 16 3 Si 0.91 18.06 29.60 -169.99 -5.03 13.03 16 4 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 5 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 6 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 7 C -0.46 -11.78 9.05 -37.74 -0.34 -12.12 16 8 H 0.08 2.00 7.91 -52.49 -0.42 1.58 16 9 C 0.12 3.08 5.57 -106.82 -0.60 2.49 16 10 C -0.23 -5.57 9.80 -38.87 -0.38 -5.95 16 11 C -0.06 -1.43 9.67 -39.66 -0.38 -1.82 16 12 C -0.24 -5.22 5.54 -104.33 -0.58 -5.80 16 13 C 0.14 2.63 5.58 36.00 0.20 2.83 16 14 O -0.35 -6.47 10.20 -39.27 -0.40 -6.87 16 15 C 0.45 7.30 7.95 36.00 0.29 7.58 16 16 O -0.51 -9.57 15.78 -18.75 -0.30 -9.86 16 17 C -0.05 -0.54 6.33 -29.04 -0.18 -0.72 16 18 C -0.17 -2.01 4.66 -104.74 -0.49 -2.50 16 19 C -0.20 -2.16 10.87 -39.70 -0.43 -2.59 16 20 C -0.05 -0.44 12.09 29.42 0.36 -0.08 16 21 O -0.18 -1.97 10.65 5.71 0.06 -1.91 16 22 C -0.02 -0.25 12.01 29.42 0.35 0.11 16 23 C -0.08 -1.76 9.67 -39.66 -0.38 -2.15 16 24 C -0.17 -4.36 8.70 -38.87 -0.34 -4.70 16 25 H 0.28 6.40 8.30 -40.82 -0.34 6.06 16 26 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 27 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 28 H 0.06 1.10 8.07 -51.92 -0.42 0.68 16 29 H 0.06 1.13 8.07 -51.93 -0.42 0.71 16 30 H 0.11 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.15 1.38 8.06 -52.48 -0.42 0.96 16 33 H 0.20 1.13 8.06 -52.49 -0.42 0.71 16 34 H 0.20 1.58 8.06 -52.49 -0.42 1.16 16 35 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 36 H 0.12 3.13 6.16 -52.49 -0.32 2.81 16 LS Contribution 324.27 15.07 4.89 4.89 Total: -1.00 -30.31 324.27 -7.26 -37.57 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -4.09 Total: 5.97 kcal Atomic # 6 Polarization: -20.68 SS G_CDS: -3.00 Total: -23.68 kcal Atomic # 7 Polarization: -19.74 SS G_CDS: 0.61 Total: -19.13 kcal Atomic # 8 Polarization: -18.01 SS G_CDS: -0.64 Total: -18.65 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -5.03 Total: 13.03 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.31 -7.26 -37.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772574240.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.362 kcal (2) G-P(sol) polarization free energy of solvation -30.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds