Wall clock time and date at job start Tue Mar 31 2020 06:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86801 * 119.99623 * 2 1 4 4 H 1.48500 * 109.46688 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47390 * 300.00465 * 3 2 1 6 6 H 1.48498 * 109.47109 * 60.00716 * 3 2 1 7 7 C 1.39941 * 120.00153 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00166 * 197.85452 * 7 2 1 9 9 C 1.41398 * 119.99788 * 17.85885 * 7 2 1 10 10 C 1.40723 * 120.24004 * 204.37923 * 9 7 2 11 11 C 1.37617 * 119.74326 * 180.02562 * 10 9 7 12 12 C 1.38638 * 120.25011 * 0.02562 * 11 10 9 13 13 C 1.50697 * 119.75355 * 179.97438 * 12 11 10 14 14 O 1.45202 * 109.46775 * 90.00018 * 13 12 11 15 15 C 1.34234 * 116.99635 * 180.02562 * 14 13 12 16 16 O 1.20829 * 119.99898 * 0.02562 * 15 14 13 17 17 C 1.50692 * 119.99821 * 180.02562 * 15 14 13 18 18 C 1.50702 * 109.47100 * 180.02562 * 17 15 14 19 19 C 1.41377 * 126.58645 * 89.99774 * 18 17 15 20 20 C 1.34514 * 106.84408 * 180.02562 * 19 18 17 21 21 O 1.34298 * 108.41913 * 359.97438 * 20 19 18 22 22 C 1.34307 * 109.47863 * 0.02562 * 21 20 19 23 23 C 1.38634 * 120.50095 * 0.26170 * 12 11 10 24 24 C 1.37625 * 120.24684 * 359.43878 * 23 12 11 25 25 H 0.96998 * 120.00224 * 359.97438 * 1 2 3 26 26 H 1.07996 * 120.12769 * 359.97438 * 10 9 7 27 27 H 1.07999 * 119.87781 * 180.02562 * 11 10 9 28 28 H 1.09009 * 109.46778 * 330.00731 * 13 12 11 29 29 H 1.08991 * 109.47267 * 210.00377 * 13 12 11 30 30 H 1.09001 * 109.47965 * 59.99657 * 17 15 14 31 31 H 1.09004 * 109.46863 * 299.99506 * 17 15 14 32 32 H 1.08009 * 126.57407 * 359.76878 * 19 18 17 33 33 H 1.08001 * 125.78597 * 180.02562 * 20 19 18 34 34 H 1.07997 * 125.78681 * 180.02562 * 22 21 20 35 35 H 1.07996 * 119.87847 * 179.70376 * 23 12 11 36 36 H 1.08002 * 120.12820 * 180.27228 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3464 -0.0006 5 1 1.8833 2.3966 -1.2124 6 1 1.8835 2.3964 1.2126 7 6 2.0080 -1.2119 -0.0005 8 1 3.0490 -1.2346 0.2862 9 6 1.3521 -2.4068 -0.3766 10 6 1.8260 -3.6499 0.0820 11 6 1.1801 -4.8065 -0.2908 12 6 0.0670 -4.7501 -1.1153 13 6 -0.6314 -6.0237 -1.5170 14 8 -1.6653 -6.3355 -0.5464 15 6 -2.3857 -7.4480 -0.7596 16 8 -2.1594 -8.1384 -1.7251 17 6 -3.4765 -7.8356 0.2051 18 6 -4.1264 -9.1138 -0.2587 19 6 -3.7406 -10.4291 0.0876 20 6 -4.5861 -11.2625 -0.5449 21 8 -5.4588 -10.5258 -1.2515 22 6 -5.1848 -9.2220 -1.0819 23 6 -0.4051 -3.5315 -1.5779 24 6 0.2214 -2.3617 -1.2129 25 1 -0.4850 0.8400 0.0004 26 1 2.6936 -3.6962 0.7234 27 1 1.5416 -5.7617 0.0603 28 1 0.0915 -6.8388 -1.5524 29 1 -1.0831 -5.8956 -2.5007 30 1 -4.2231 -7.0426 0.2474 31 1 -3.0486 -7.9850 1.1964 32 1 -2.9214 -10.7108 0.7326 33 1 -4.5668 -12.3411 -0.4926 34 1 -5.7232 -8.4000 -1.5298 35 1 -1.2701 -3.4996 -2.2236 36 1 -0.1506 -1.4130 -1.5709 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000772574240.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:10 Heat of formation + Delta-G solvation = -74.859903 kcal Electronic energy + Delta-G solvation = -20656.828789 eV Core-core repulsion = 17264.642433 eV Total energy + Delta-G solvation = -3392.186356 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.104 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.48076 -41.36798 -39.48599 -37.53802 -35.68190 -35.04482 -32.64851 -31.44794 -31.22441 -29.46670 -28.46991 -25.58996 -22.98733 -22.84584 -22.49956 -21.81737 -21.00022 -19.27580 -18.67712 -18.45804 -17.55738 -17.41885 -17.07731 -16.71675 -15.87710 -15.63160 -15.55607 -15.51072 -14.53377 -14.40717 -13.92196 -13.84563 -13.72554 -13.65450 -13.58341 -13.39415 -12.85076 -12.68895 -12.60425 -12.50822 -12.09727 -11.72332 -11.62569 -11.44029 -11.29101 -11.05090 -10.67359 -9.48513 -9.43368 -9.32971 -8.69072 -6.39879 0.68915 0.87432 1.10569 1.23801 1.37835 1.40747 1.54111 1.55948 2.16254 2.20572 2.31677 2.74627 3.66286 3.72372 3.90246 4.00609 4.09672 4.10612 4.14378 4.47548 4.51204 4.54097 4.54968 4.60238 4.76221 5.00236 5.07380 5.11924 5.26819 5.30109 5.39119 5.49812 5.60749 5.64811 5.88374 6.05392 6.14132 6.17338 6.31575 6.64105 6.80971 6.88317 6.96823 8.27791 Molecular weight = 286.10amu Principal moments of inertia in cm(-1) A = 0.045515 B = 0.002616 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.030305 B =10701.044362 C =10943.229410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.035 3.965 3 Si 0.985 3.015 4 H -0.258 1.258 5 H -0.264 1.264 6 H -0.265 1.265 7 C -0.492 4.492 8 H 0.079 0.921 9 C 0.087 3.913 10 C -0.245 4.245 11 C -0.066 4.066 12 C -0.230 4.230 13 C 0.141 3.859 14 O -0.362 6.362 15 C 0.456 3.544 16 O -0.541 6.541 17 C -0.038 4.038 18 C -0.194 4.194 19 C -0.222 4.222 20 C -0.042 4.042 21 O -0.188 6.188 22 C -0.030 4.030 23 C -0.080 4.080 24 C -0.194 4.194 25 H 0.291 0.709 26 H 0.103 0.897 27 H 0.117 0.883 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.137 0.863 31 H 0.132 0.868 32 H 0.157 0.843 33 H 0.237 0.763 34 H 0.224 0.776 35 H 0.107 0.893 36 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.990 -13.606 0.826 16.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.181 4.181 3 Si 0.805 3.195 4 H -0.181 1.181 5 H -0.188 1.188 6 H -0.189 1.189 7 C -0.521 4.521 8 H 0.098 0.902 9 C 0.084 3.916 10 C -0.265 4.265 11 C -0.084 4.084 12 C -0.232 4.232 13 C 0.069 3.931 14 O -0.279 6.279 15 C 0.300 3.700 16 O -0.431 6.431 17 C -0.075 4.075 18 C -0.195 4.195 19 C -0.241 4.241 20 C -0.108 4.108 21 O -0.084 6.084 22 C -0.097 4.097 23 C -0.099 4.099 24 C -0.213 4.213 25 H 0.101 0.899 26 H 0.121 0.879 27 H 0.135 0.865 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.154 0.846 31 H 0.150 0.850 32 H 0.175 0.825 33 H 0.253 0.747 34 H 0.241 0.759 35 H 0.125 0.875 36 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -9.326 -13.752 0.365 16.620 hybrid contribution 0.688 0.872 0.001 1.110 sum -8.638 -12.881 0.366 15.513 Atomic orbital electron populations 1.69876 1.09093 1.30832 1.34464 1.26827 0.95518 1.04712 0.91088 0.85119 0.79422 0.75925 0.79027 1.18099 1.18830 1.18923 1.19946 0.98513 0.92408 1.41211 0.90246 1.18053 0.91589 0.93210 0.88708 1.21179 1.04760 0.92851 1.07668 1.20706 0.94832 0.97276 0.95569 1.19000 1.01012 0.92821 1.10331 1.21525 0.87132 0.94683 0.89753 1.86686 1.46183 1.42327 1.52727 1.24395 0.82098 0.77765 0.85695 1.90623 1.68211 1.52815 1.31493 1.19726 0.94319 0.95581 0.97859 1.20063 0.99780 0.95092 1.04567 1.22000 1.03654 0.92244 1.06200 1.24660 0.91287 0.98939 0.95945 1.84072 1.49334 1.17688 1.57278 1.24350 0.99991 0.84441 1.00961 1.20777 0.97999 0.92329 0.98766 1.21273 1.00579 0.96938 1.02524 0.89851 0.87911 0.86492 0.91194 0.91520 0.84553 0.85045 0.82533 0.74724 0.75950 0.87533 0.87724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.95 10.96 21.83 0.24 -41.71 16 2 C 0.03 1.71 5.14 85.25 0.44 2.14 16 3 Si 0.98 37.20 29.60 68.60 2.03 39.23 16 4 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 5 H -0.26 -9.57 7.11 99.48 0.71 -8.87 16 6 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 7 C -0.49 -26.15 9.05 23.46 0.21 -25.94 16 8 H 0.08 4.06 7.91 -2.91 -0.02 4.03 16 9 C 0.09 4.67 5.57 -21.29 -0.12 4.56 16 10 C -0.25 -11.98 9.80 22.73 0.22 -11.76 16 11 C -0.07 -2.88 9.67 22.22 0.21 -2.67 16 12 C -0.23 -9.99 5.54 -19.68 -0.11 -10.10 16 13 C 0.14 5.22 5.58 71.24 0.40 5.61 16 14 O -0.36 -12.71 10.20 -51.46 -0.53 -13.23 16 15 C 0.46 13.81 7.95 71.23 0.57 14.38 16 16 O -0.54 -19.35 15.78 21.95 0.35 -19.00 16 17 C -0.04 -0.79 6.33 29.10 0.18 -0.60 16 18 C -0.19 -4.21 4.66 -19.94 -0.09 -4.30 16 19 C -0.22 -4.45 10.87 22.19 0.24 -4.21 16 20 C -0.04 -0.71 12.09 66.97 0.81 0.10 16 21 O -0.19 -3.85 10.65 -2.48 -0.03 -3.88 16 22 C -0.03 -0.59 12.01 66.97 0.80 0.21 16 23 C -0.08 -3.74 9.67 22.22 0.21 -3.53 16 24 C -0.19 -10.17 8.70 22.73 0.20 -9.97 16 25 H 0.29 13.35 8.30 -92.71 -0.77 12.58 16 26 H 0.10 4.70 8.06 -2.91 -0.02 4.68 16 27 H 0.12 4.40 8.06 -2.91 -0.02 4.38 16 28 H 0.07 2.44 8.07 -2.38 -0.02 2.42 16 29 H 0.07 2.37 8.07 -2.39 -0.02 2.35 16 30 H 0.14 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.13 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.16 2.68 8.06 -2.91 -0.02 2.65 16 33 H 0.24 1.95 8.06 -2.91 -0.02 1.93 16 34 H 0.22 3.04 8.06 -2.91 -0.02 3.02 16 35 H 0.11 4.45 8.06 -2.91 -0.02 4.43 16 36 H 0.10 5.71 6.16 -2.91 -0.02 5.69 16 Total: -1.00 -65.98 324.27 7.34 -58.64 By element: Atomic # 1 Polarization: 24.95 SS G_CDS: 1.09 Total: 26.04 kcal Atomic # 6 Polarization: -50.26 SS G_CDS: 4.18 Total: -46.08 kcal Atomic # 7 Polarization: -41.95 SS G_CDS: 0.24 Total: -41.71 kcal Atomic # 8 Polarization: -35.91 SS G_CDS: -0.20 Total: -36.12 kcal Atomic # 14 Polarization: 37.20 SS G_CDS: 2.03 Total: 39.23 kcal Total: -65.98 7.34 -58.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772574240.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.223 kcal (2) G-P(sol) polarization free energy of solvation -65.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds